Wall clock time and date at job start Mon Mar 30 2020 03:45:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08998 * 109.47658 * 2 1
4 4 C 1.53002 * 109.47326 * 120.00279 * 2 1 3
5 5 N 1.46892 * 109.47561 * 174.99734 * 4 2 1
6 6 N 1.46502 * 109.47008 * 240.00095 * 2 1 3
7 7 C 1.39780 * 120.00186 * 85.00571 * 6 2 1
8 8 C 1.38953 * 120.00626 * 0.26838 * 7 6 2
9 9 C 1.38011 * 119.99473 * 180.23480 * 8 7 6
10 10 C 1.38889 * 120.00542 * 359.49883 * 9 8 7
11 11 O 1.35806 * 119.99420 * 180.27611 * 10 9 8
12 12 C 1.34807 * 116.99757 * 354.45180 * 11 10 9
13 13 H 1.08004 * 119.99812 * 5.06523 * 12 11 10
14 14 C 1.38621 * 120.00005 * 185.05742 * 12 11 10
15 15 N 1.31579 * 119.99937 * 0.02562 * 14 12 11
16 16 Si 1.86799 * 120.00036 * 180.02562 * 14 12 11
17 17 H 1.48501 * 109.47182 * 60.00341 * 16 14 12
18 18 H 1.48502 * 109.47043 * 179.97438 * 16 14 12
19 19 H 1.48500 * 109.47140 * 300.00008 * 16 14 12
20 20 C 1.38904 * 120.01567 * 0.24923 * 10 9 8
21 21 C 1.38009 * 120.00120 * 0.02562 * 20 10 9
22 22 H 1.08997 * 109.46935 * 300.00075 * 1 2 3
23 23 H 1.09005 * 109.46839 * 59.99735 * 1 2 3
24 24 H 1.08997 * 109.47544 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.47217 * 295.00034 * 4 2 1
26 26 H 1.09006 * 109.46971 * 54.99580 * 4 2 1
27 27 H 1.00905 * 111.00160 * 56.04524 * 5 4 2
28 28 H 1.00899 * 111.00650 * 179.97438 * 5 4 2
29 29 H 0.97007 * 120.00389 * 264.99550 * 6 2 1
30 30 H 1.08004 * 120.00250 * 0.02562 * 8 7 6
31 31 H 1.08000 * 119.99170 * 179.76867 * 9 8 7
32 32 H 0.97003 * 120.00502 * 179.97438 * 15 14 12
33 33 H 1.07995 * 119.99933 * 180.02562 * 20 10 9
34 34 H 1.08000 * 120.00392 * 179.97438 * 21 20 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 7 3.5040 -0.8268 1.1904
6 7 2.0183 -0.6906 -1.1962
7 6 2.1519 0.0067 -2.4003
8 6 1.8269 1.3563 -2.4614
9 6 1.9543 2.0434 -3.6515
10 6 2.4172 1.3886 -4.7855
11 8 2.5478 2.0663 -5.9551
12 6 2.1038 3.3390 -5.9778
13 1 1.7437 3.8015 -5.0707
14 6 2.1097 4.0540 -7.1653
15 7 2.5481 3.4903 -8.2705
16 14 1.4952 5.8177 -7.1966
17 1 2.3164 6.6445 -6.2761
18 1 1.6057 6.3560 -8.5763
19 1 0.0756 5.8551 -6.7624
20 6 2.7471 0.0407 -4.7235
21 6 2.6145 -0.6482 -3.5350
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.7517 -0.1584 2.1370
26 1 1.6053 -1.7199 1.2951
27 1 3.9280 0.0824 1.0824
28 1 3.8656 -1.2995 2.0052
29 1 2.2490 -1.6318 -1.1527
30 1 1.4714 1.8668 -1.5785
31 1 1.6981 3.0915 -3.6999
32 1 2.5519 3.9905 -9.1016
33 1 3.1075 -0.4681 -5.6053
34 1 2.8707 -1.6963 -3.4868
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000235112789.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:22
Heat of formation + Delta-G solvation = -23.434660 kcal
Electronic energy + Delta-G solvation = -16185.239932 eV
Core-core repulsion = 13503.625428 eV
Total energy + Delta-G solvation = -2681.614504 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.72148 -39.09276 -37.21773 -34.43205 -33.79244 -31.89688 -31.34797 -28.43678
-27.07078 -25.63467 -23.92255 -22.65571 -21.27375 -19.77593 -18.96387 -17.59696
-17.13950 -16.26035 -16.23097 -15.77824 -15.54818 -15.36140 -14.88348 -14.65555
-14.32271 -14.01355 -13.79532 -13.41807 -13.18270 -13.00562 -12.89651 -12.61905
-12.43146 -12.20288 -12.10126 -11.71537 -11.03916 -10.88074 -10.13276 -9.73691
-9.53576 -8.37217 -7.83495 -6.00548 0.62472 0.99122 1.36926 1.48659
1.53375 2.24278 2.73417 2.94343 3.28857 3.66754 3.71638 3.96441
4.11789 4.21592 4.30754 4.51851 4.60692 4.63983 4.75024 4.81153
4.86220 5.00391 5.12341 5.16270 5.29824 5.37667 5.57412 5.59451
5.82173 6.03960 6.13642 6.25608 6.62329 6.73536 7.08133 7.18147
7.96569 8.87338
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.041123 B = 0.005072 C = 0.004755
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 680.715295 B = 5518.914058 C = 5887.732094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.150 3.850
3 H 0.063 0.937
4 C 0.062 3.938
5 N -0.856 5.856
6 N -0.725 5.725
7 C 0.162 3.838
8 C -0.153 4.153
9 C -0.192 4.192
10 C 0.056 3.944
11 O -0.244 6.244
12 C -0.406 4.406
13 H 0.097 0.903
14 C -0.029 4.029
15 N -0.928 5.928
16 Si 1.017 2.983
17 H -0.258 1.258
18 H -0.273 1.273
19 H -0.259 1.259
20 C -0.153 4.153
21 C -0.146 4.146
22 H 0.078 0.922
23 H 0.041 0.959
24 H 0.062 0.938
25 H 0.053 0.947
26 H 0.081 0.919
27 H 0.342 0.658
28 H 0.350 0.650
29 H 0.402 0.598
30 H 0.132 0.868
31 H 0.116 0.884
32 H 0.269 0.731
33 H 0.112 0.888
34 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.783 -6.450 20.440 21.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.044 3.956
3 H 0.081 0.919
4 C -0.070 4.070
5 N -0.387 5.387
6 N -0.358 5.358
7 C 0.060 3.940
8 C -0.176 4.176
9 C -0.212 4.212
10 C 0.007 3.993
11 O -0.152 6.152
12 C -0.483 4.483
13 H 0.114 0.886
14 C -0.225 4.225
15 N -0.568 5.568
16 Si 0.836 3.164
17 H -0.183 1.183
18 H -0.197 1.197
19 H -0.183 1.183
20 C -0.173 4.173
21 C -0.169 4.169
22 H 0.097 0.903
23 H 0.060 0.940
24 H 0.081 0.919
25 H 0.071 0.929
26 H 0.099 0.901
27 H 0.154 0.846
28 H 0.164 0.836
29 H 0.238 0.762
30 H 0.150 0.850
31 H 0.134 0.866
32 H 0.078 0.922
33 H 0.130 0.870
34 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -2.853 -6.794 19.529 20.873
hybrid contribution -0.069 1.079 0.263 1.112
sum -2.922 -5.715 19.792 20.807
Atomic orbital electron populations
1.22239 0.95561 1.02572 1.02081 1.20927 0.93494 0.96352 0.84862
0.91855 1.22008 0.88780 1.00955 0.95217 1.58587 1.05238 1.26844
1.48049 1.44203 1.74321 1.11942 1.05345 1.17538 0.97999 0.91196
0.87221 1.20483 1.06674 0.93394 0.97025 1.21032 1.06583 1.00474
0.93130 1.19723 0.99563 0.92968 0.87048 1.83931 1.74555 1.26441
1.30309 1.21706 1.42847 0.86637 0.97121 0.88604 1.26525 0.97420
1.05052 0.93484 1.70202 1.46834 1.39534 1.00202 0.84681 0.79116
0.74406 0.78186 1.18265 1.19735 1.18317 1.20224 1.06590 0.91328
0.99130 1.20409 1.05641 1.00126 0.90697 0.90322 0.93958 0.91921
0.92863 0.90100 0.84585 0.83628 0.76233 0.84982 0.86639 0.92177
0.86976 0.83878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.94 9.44 71.98 0.68 -2.26 16
2 C 0.15 2.84 2.51 44.99 0.11 2.95 16
3 H 0.06 1.33 6.47 -2.39 -0.02 1.31 16
4 C 0.06 0.83 6.34 86.31 0.55 1.38 16
5 N -0.86 -12.41 9.35 -186.72 -1.75 -14.15 16
6 N -0.73 -17.43 4.98 -318.80 -1.59 -19.01 16
7 C 0.16 5.35 6.64 38.22 0.25 5.61 16
8 C -0.15 -5.60 8.86 22.39 0.20 -5.40 16
9 C -0.19 -8.83 9.16 22.37 0.20 -8.63 16
10 C 0.06 2.96 6.65 22.59 0.15 3.11 16
11 O -0.24 -15.42 9.76 -23.13 -0.23 -15.65 16
12 C -0.41 -24.73 9.48 67.91 0.64 -24.09 16
13 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16
14 C -0.03 -1.71 5.49 84.82 0.47 -1.24 16
15 N -0.93 -59.20 13.67 21.61 0.30 -58.90 16
16 Si 1.02 44.54 29.55 68.60 2.03 46.57 16
17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16
18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16
19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16
20 C -0.15 -6.88 9.98 22.38 0.22 -6.66 16
21 C -0.15 -5.23 9.89 22.39 0.22 -5.01 16
22 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16
23 H 0.04 0.96 7.74 -2.38 -0.02 0.94 16
24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
25 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16
26 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16
27 H 0.34 5.19 8.99 -89.69 -0.81 4.39 16
28 H 0.35 3.66 9.08 -89.69 -0.81 2.84 16
29 H 0.40 8.76 8.62 -92.70 -0.80 7.96 16
30 H 0.13 4.06 6.13 -2.91 -0.02 4.05 16
31 H 0.12 5.38 5.63 -2.91 -0.02 5.37 16
32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16
33 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16
34 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16
Total: -1.00 -73.32 287.93 1.19 -72.13
By element:
Atomic # 1 Polarization: 30.55 SS G_CDS: -1.28 Total: 29.27 kcal
Atomic # 6 Polarization: -43.95 SS G_CDS: 3.70 Total: -40.25 kcal
Atomic # 7 Polarization: -89.03 SS G_CDS: -3.04 Total: -92.07 kcal
Atomic # 8 Polarization: -15.42 SS G_CDS: -0.23 Total: -15.65 kcal
Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal
Total: -73.32 1.19 -72.13 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235112789.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.694 kcal
(2) G-P(sol) polarization free energy of solvation -73.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.624 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.435 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds