Wall clock time and date at job start Mon Mar 30 2020 03:45:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08998 * 109.47166 * 2 1
4 4 C 1.52994 * 109.47167 * 120.00421 * 2 1 3
5 5 N 1.46904 * 109.47092 * 175.00122 * 4 2 1
6 6 N 1.46499 * 109.46935 * 240.00470 * 2 1 3
7 7 C 1.39674 * 120.00251 * 84.99536 * 6 2 1
8 8 C 1.39000 * 120.03655 * 0.02562 * 7 6 2
9 9 C 1.38150 * 120.05976 * 179.97438 * 8 7 6
10 10 C 1.38176 * 120.14183 * 0.23408 * 9 8 7
11 11 C 1.38918 * 120.07654 * 359.48826 * 10 9 8
12 12 O 1.35757 * 120.02760 * 180.23102 * 11 10 9
13 13 C 1.34828 * 116.99481 * 174.75826 * 12 11 10
14 14 H 1.07996 * 120.00453 * 5.06478 * 13 12 11
15 15 C 1.38656 * 119.99461 * 185.05914 * 13 12 11
16 16 N 1.31551 * 120.00352 * 0.02562 * 15 13 12
17 17 Si 1.86804 * 119.99814 * 180.02562 * 15 13 12
18 18 H 1.48497 * 109.47114 * 59.99892 * 17 15 13
19 19 H 1.48500 * 109.47316 * 180.02562 * 17 15 13
20 20 H 1.48502 * 109.47072 * 300.00253 * 17 15 13
21 21 C 1.38745 * 120.03735 * 179.97438 * 7 6 2
22 22 H 1.08998 * 109.47166 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.46959 * 299.99425 * 1 2 3
24 24 H 1.09005 * 109.47572 * 59.99905 * 1 2 3
25 25 H 1.08999 * 109.47062 * 294.99793 * 4 2 1
26 26 H 1.08992 * 109.47367 * 55.00016 * 4 2 1
27 27 H 1.00894 * 111.00023 * 56.04177 * 5 4 2
28 28 H 1.00899 * 110.99856 * 179.97438 * 5 4 2
29 29 H 0.97008 * 119.99890 * 265.00072 * 6 2 1
30 30 H 1.07999 * 119.97354 * 359.97190 * 8 7 6
31 31 H 1.08000 * 119.93185 * 179.97438 * 9 8 7
32 32 H 1.08005 * 119.95678 * 179.72067 * 10 9 8
33 33 H 0.97003 * 120.00602 * 179.97438 * 16 15 13
34 34 H 1.08001 * 120.07494 * 0.02562 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2491
5 7 3.5041 -0.8267 1.1903
6 7 2.0183 -0.6905 -1.1962
7 6 2.1516 0.0063 -2.3994
8 6 1.8217 1.3551 -2.4625
9 6 1.9538 2.0449 -3.6521
10 6 2.4095 1.3958 -4.7836
11 6 2.7463 0.0493 -4.7257
12 8 3.1983 -0.5863 -5.8369
13 6 3.6100 -1.8615 -5.6877
14 1 3.4951 -2.3582 -4.7356
15 6 4.1807 -2.5353 -6.7568
16 7 4.3210 -1.9302 -7.9164
17 14 4.7504 -4.3023 -6.5504
18 1 3.5957 -5.1529 -6.1654
19 1 5.3209 -4.7913 -7.8312
20 1 5.7882 -4.3672 -5.4901
21 6 2.6145 -0.6468 -3.5326
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8901
24 1 -0.3634 0.5139 -0.8900
25 1 1.7517 -0.1584 2.1369
26 1 1.6054 -1.7198 1.2950
27 1 3.9280 0.0825 1.0823
28 1 3.8656 -1.2994 2.0051
29 1 2.2490 -1.6318 -1.1527
30 1 1.4617 1.8643 -1.5808
31 1 1.6965 3.0927 -3.6989
32 1 2.5074 1.9369 -5.7132
33 1 4.7206 -2.4013 -8.6642
34 1 2.8719 -1.6947 -3.4862
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000235114869.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:24
Heat of formation + Delta-G solvation = -2.316424 kcal
Electronic energy + Delta-G solvation = -16344.423462 eV
Core-core repulsion = 13663.724713 eV
Total energy + Delta-G solvation = -2680.698749 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.07128 -37.61387 -35.83639 -33.27020 -32.08760 -30.85911 -28.64145 -27.56704
-25.23235 -24.83015 -21.97354 -21.40218 -19.97998 -17.77447 -17.32432 -16.14967
-15.37155 -15.31926 -15.03397 -14.36559 -14.19265 -13.66962 -13.48310 -13.34107
-12.85970 -12.71463 -12.39597 -12.10084 -11.89925 -11.54272 -11.31203 -10.94533
-10.81987 -10.68598 -10.45262 -10.28398 -9.31001 -9.27646 -8.82224 -8.67199
-7.24037 -6.61807 -6.33007 -3.91846 2.49160 2.68604 3.19908 3.22064
3.23785 3.86998 4.07039 4.40954 4.76541 4.81690 5.08749 5.23725
5.32100 5.38033 5.46631 5.60208 5.66601 5.81000 5.95452 6.07755
6.24481 6.38309 6.49010 6.75627 6.78065 6.95695 7.16941 7.25321
7.27580 7.49056 7.59968 7.80245 8.14153 8.18283 8.39802 9.13405
9.86966 10.85513
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.025116 B = 0.006463 C = 0.005436
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.564388 B = 4331.373807 C = 5149.401255
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.154 3.846
3 H 0.073 0.927
4 C 0.054 3.946
5 N -0.844 5.844
6 N -0.734 5.734
7 C 0.256 3.744
8 C -0.284 4.284
9 C -0.040 4.040
10 C -0.240 4.240
11 C 0.190 3.810
12 O -0.180 6.180
13 C -0.387 4.387
14 H 0.090 0.910
15 C 0.038 3.962
16 N -0.867 5.867
17 Si 0.939 3.061
18 H -0.271 1.271
19 H -0.279 1.279
20 H -0.271 1.271
21 C -0.302 4.302
22 H 0.056 0.944
23 H 0.055 0.945
24 H 0.066 0.934
25 H 0.034 0.966
26 H 0.073 0.927
27 H 0.343 0.657
28 H 0.339 0.661
29 H 0.397 0.603
30 H 0.102 0.898
31 H 0.108 0.892
32 H 0.111 0.889
33 H 0.269 0.731
34 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.492 2.561 16.503 17.294
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.047 3.953
3 H 0.091 0.909
4 C -0.078 4.078
5 N -0.374 5.374
6 N -0.364 5.364
7 C 0.154 3.846
8 C -0.307 4.307
9 C -0.059 4.059
10 C -0.261 4.261
11 C 0.136 3.864
12 O -0.083 6.083
13 C -0.464 4.464
14 H 0.108 0.892
15 C -0.166 4.166
16 N -0.502 5.502
17 Si 0.764 3.236
18 H -0.197 1.197
19 H -0.204 1.204
20 H -0.196 1.196
21 C -0.326 4.326
22 H 0.075 0.925
23 H 0.074 0.926
24 H 0.085 0.915
25 H 0.052 0.948
26 H 0.092 0.908
27 H 0.156 0.844
28 H 0.151 0.849
29 H 0.232 0.768
30 H 0.120 0.880
31 H 0.126 0.874
32 H 0.129 0.871
33 H 0.078 0.922
34 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -4.564 2.260 15.505 16.320
hybrid contribution 0.333 -0.699 1.092 1.339
sum -4.231 1.561 16.597 17.199
Atomic orbital electron populations
1.22285 0.96195 1.02240 1.02060 1.20748 0.93049 0.96635 0.84850
0.90890 1.22091 0.88969 1.00674 0.96033 1.58559 1.04963 1.26682
1.47155 1.44394 1.73737 1.12072 1.06226 1.17468 0.91339 0.90823
0.84997 1.20067 1.18674 0.93516 0.98444 1.20354 0.95897 0.97773
0.91917 1.20007 1.13985 0.92902 0.99228 1.19076 0.89992 0.91198
0.86180 1.83983 1.69629 1.26838 1.27878 1.21258 1.40050 0.85927
0.99145 0.89229 1.25251 0.96699 1.00014 0.94605 1.70031 1.41599
1.37245 1.01355 0.85820 0.79126 0.80781 0.77903 1.19651 1.20382
1.19596 1.20488 1.18153 1.01257 0.92738 0.92517 0.92572 0.91541
0.94792 0.90811 0.84444 0.84917 0.76830 0.88018 0.87435 0.87086
0.92163 0.85899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.83 9.43 37.16 0.35 -1.48 16
2 C 0.15 1.83 2.51 -67.93 -0.17 1.66 16
3 H 0.07 0.90 6.48 -51.93 -0.34 0.57 16
4 C 0.05 0.51 6.34 -3.82 -0.02 0.49 16
5 N -0.84 -8.48 9.35 -10.37 -0.10 -8.57 16
6 N -0.73 -11.32 4.97 -52.19 -0.26 -11.58 16
7 C 0.26 4.94 6.63 -83.82 -0.56 4.39 16
8 C -0.28 -5.19 8.85 -39.33 -0.35 -5.54 16
9 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16
10 C -0.24 -5.43 9.99 -39.35 -0.39 -5.82 16
11 C 0.19 4.85 6.64 -39.14 -0.26 4.59 16
12 O -0.18 -5.37 9.76 0.03 0.00 -5.36 16
13 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16
14 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16
15 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16
16 N -0.87 -26.18 13.67 55.48 0.76 -25.43 16
17 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16
18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16
19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16
20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
21 C -0.30 -6.95 9.01 -39.20 -0.35 -7.30 16
22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
24 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16
25 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16
26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.34 3.39 8.99 -39.30 -0.35 3.04 16
28 H 0.34 2.69 9.08 -39.29 -0.36 2.33 16
29 H 0.40 6.13 8.61 -40.82 -0.35 5.78 16
30 H 0.10 1.60 6.11 -52.49 -0.32 1.28 16
31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16
32 H 0.11 2.44 8.06 -52.48 -0.42 2.01 16
33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16
34 H 0.12 2.87 5.64 -52.49 -0.30 2.57 16
LS Contribution 287.84 15.07 4.34 4.34
Total: -1.00 -31.85 287.84 -6.60 -38.45
By element:
Atomic # 1 Polarization: 16.47 SS G_CDS: -4.36 Total: 12.11 kcal
Atomic # 6 Polarization: -18.21 SS G_CDS: -1.96 Total: -20.17 kcal
Atomic # 7 Polarization: -45.98 SS G_CDS: 0.40 Total: -45.58 kcal
Atomic # 8 Polarization: -5.37 SS G_CDS: 0.00 Total: -5.36 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -31.85 -6.60 -38.45 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235114869.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.129 kcal
(2) G-P(sol) polarization free energy of solvation -31.848 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.281 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds