Wall clock time and date at job start Mon Mar 30 2020 03:45:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08998 * 109.47166 * 2 1
4 4 C 1.52994 * 109.47167 * 120.00421 * 2 1 3
5 5 N 1.46904 * 109.47092 * 175.00122 * 4 2 1
6 6 N 1.46499 * 109.46935 * 240.00470 * 2 1 3
7 7 C 1.39674 * 120.00251 * 84.99536 * 6 2 1
8 8 C 1.39000 * 120.03655 * 0.02562 * 7 6 2
9 9 C 1.38150 * 120.05976 * 179.97438 * 8 7 6
10 10 C 1.38176 * 120.14183 * 0.23408 * 9 8 7
11 11 C 1.38918 * 120.07654 * 359.48826 * 10 9 8
12 12 O 1.35757 * 120.02760 * 180.23102 * 11 10 9
13 13 C 1.34828 * 116.99481 * 174.75826 * 12 11 10
14 14 H 1.07996 * 120.00453 * 5.06478 * 13 12 11
15 15 C 1.38656 * 119.99461 * 185.05914 * 13 12 11
16 16 N 1.31551 * 120.00352 * 0.02562 * 15 13 12
17 17 Si 1.86804 * 119.99814 * 180.02562 * 15 13 12
18 18 H 1.48497 * 109.47114 * 59.99892 * 17 15 13
19 19 H 1.48500 * 109.47316 * 180.02562 * 17 15 13
20 20 H 1.48502 * 109.47072 * 300.00253 * 17 15 13
21 21 C 1.38745 * 120.03735 * 179.97438 * 7 6 2
22 22 H 1.08998 * 109.47166 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.46959 * 299.99425 * 1 2 3
24 24 H 1.09005 * 109.47572 * 59.99905 * 1 2 3
25 25 H 1.08999 * 109.47062 * 294.99793 * 4 2 1
26 26 H 1.08992 * 109.47367 * 55.00016 * 4 2 1
27 27 H 1.00894 * 111.00023 * 56.04177 * 5 4 2
28 28 H 1.00899 * 110.99856 * 179.97438 * 5 4 2
29 29 H 0.97008 * 119.99890 * 265.00072 * 6 2 1
30 30 H 1.07999 * 119.97354 * 359.97190 * 8 7 6
31 31 H 1.08000 * 119.93185 * 179.97438 * 9 8 7
32 32 H 1.08005 * 119.95678 * 179.72067 * 10 9 8
33 33 H 0.97003 * 120.00602 * 179.97438 * 16 15 13
34 34 H 1.08001 * 120.07494 * 0.02562 * 21 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2491
5 7 3.5041 -0.8267 1.1903
6 7 2.0183 -0.6905 -1.1962
7 6 2.1516 0.0063 -2.3994
8 6 1.8217 1.3551 -2.4625
9 6 1.9538 2.0449 -3.6521
10 6 2.4095 1.3958 -4.7836
11 6 2.7463 0.0493 -4.7257
12 8 3.1983 -0.5863 -5.8369
13 6 3.6100 -1.8615 -5.6877
14 1 3.4951 -2.3582 -4.7356
15 6 4.1807 -2.5353 -6.7568
16 7 4.3210 -1.9302 -7.9164
17 14 4.7504 -4.3023 -6.5504
18 1 3.5957 -5.1529 -6.1654
19 1 5.3209 -4.7913 -7.8312
20 1 5.7882 -4.3672 -5.4901
21 6 2.6145 -0.6468 -3.5326
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5138 0.8901
24 1 -0.3634 0.5139 -0.8900
25 1 1.7517 -0.1584 2.1369
26 1 1.6054 -1.7198 1.2950
27 1 3.9280 0.0825 1.0823
28 1 3.8656 -1.2994 2.0051
29 1 2.2490 -1.6318 -1.1527
30 1 1.4617 1.8643 -1.5808
31 1 1.6965 3.0927 -3.6989
32 1 2.5074 1.9369 -5.7132
33 1 4.7206 -2.4013 -8.6642
34 1 2.8719 -1.6947 -3.4862
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000235114869.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:24
Heat of formation + Delta-G solvation = -26.472467 kcal
Electronic energy + Delta-G solvation = -16345.470946 eV
Core-core repulsion = 13663.724713 eV
Total energy + Delta-G solvation = -2681.746233 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.76880 -39.10934 -37.28167 -34.54470 -34.04416 -32.01970 -30.33478 -29.05910
-27.22577 -25.73242 -23.49988 -22.90914 -21.36442 -19.63615 -19.04269 -17.26315
-16.95926 -16.67598 -16.21966 -16.01266 -15.60669 -15.46488 -14.99397 -14.58483
-14.33255 -14.10171 -13.79642 -13.47031 -13.17719 -12.95893 -12.79671 -12.48880
-12.41019 -12.16079 -12.02762 -11.65613 -11.25802 -10.92022 -10.56852 -9.54821
-9.06268 -8.43287 -8.12252 -6.11443 0.81266 0.97870 1.34491 1.46688
1.51155 2.20307 2.63040 2.91917 3.30758 3.61551 3.65762 3.93661
4.18463 4.28399 4.43673 4.52347 4.60124 4.65784 4.73225 4.82107
4.89932 4.99693 5.16055 5.19352 5.22442 5.37411 5.53879 5.79578
5.84530 6.08341 6.16392 6.25845 6.60757 6.72225 6.98050 7.02653
7.86069 8.80263
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.025116 B = 0.006463 C = 0.005436
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1114.564388 B = 4331.373807 C = 5149.401255
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.148 3.852
3 H 0.077 0.923
4 C 0.060 3.940
5 N -0.861 5.861
6 N -0.724 5.724
7 C 0.264 3.736
8 C -0.267 4.267
9 C -0.026 4.026
10 C -0.267 4.267
11 C 0.152 3.848
12 O -0.234 6.234
13 C -0.410 4.410
14 H 0.097 0.903
15 C -0.024 4.024
16 N -0.923 5.923
17 Si 1.018 2.982
18 H -0.258 1.258
19 H -0.270 1.270
20 H -0.259 1.259
21 C -0.319 4.319
22 H 0.055 0.945
23 H 0.085 0.915
24 H 0.048 0.952
25 H 0.061 0.939
26 H 0.075 0.925
27 H 0.343 0.657
28 H 0.350 0.650
29 H 0.397 0.603
30 H 0.141 0.859
31 H 0.151 0.849
32 H 0.104 0.896
33 H 0.272 0.728
34 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.349 2.790 20.009 20.899
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.042 3.958
3 H 0.095 0.905
4 C -0.071 4.071
5 N -0.392 5.392
6 N -0.352 5.352
7 C 0.158 3.842
8 C -0.289 4.289
9 C -0.045 4.045
10 C -0.288 4.288
11 C 0.101 3.899
12 O -0.140 6.140
13 C -0.487 4.487
14 H 0.114 0.886
15 C -0.221 4.221
16 N -0.561 5.561
17 Si 0.837 3.163
18 H -0.183 1.183
19 H -0.194 1.194
20 H -0.184 1.184
21 C -0.344 4.344
22 H 0.074 0.926
23 H 0.104 0.896
24 H 0.068 0.932
25 H 0.079 0.921
26 H 0.094 0.906
27 H 0.156 0.844
28 H 0.164 0.836
29 H 0.231 0.769
30 H 0.159 0.841
31 H 0.168 0.832
32 H 0.122 0.878
33 H 0.081 0.919
34 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -5.453 2.505 19.106 20.026
hybrid contribution 0.463 -0.574 0.300 0.796
sum -4.991 1.931 19.406 20.130
Atomic orbital electron populations
1.22232 0.94984 1.02437 1.02666 1.21073 0.93888 0.96710 0.84085
0.90544 1.22041 0.88659 1.00903 0.95544 1.58562 1.05423 1.26982
1.48252 1.44601 1.72418 1.12138 1.06072 1.17558 0.89843 0.91493
0.85273 1.20531 1.16127 0.92849 0.99413 1.20813 0.93454 0.99617
0.90584 1.20231 1.15755 0.92135 1.00695 1.19654 0.91216 0.92596
0.86410 1.83941 1.72228 1.27513 1.30332 1.21738 1.40635 0.86399
0.99903 0.88551 1.26571 0.96445 1.05184 0.93901 1.70182 1.43711
1.39687 1.02534 0.84672 0.79044 0.74197 0.78415 1.18251 1.19396
1.18350 1.20486 1.19554 1.00803 0.93511 0.92630 0.89625 0.93243
0.92112 0.90649 0.84388 0.83586 0.76873 0.84143 0.83173 0.87762
0.91912 0.87306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.91 9.43 71.98 0.68 -2.23 16
2 C 0.15 2.94 2.51 44.99 0.11 3.05 16
3 H 0.08 1.52 6.48 -2.39 -0.02 1.50 16
4 C 0.06 0.91 6.34 86.30 0.55 1.46 16
5 N -0.86 -14.73 9.35 -186.73 -1.75 -16.47 16
6 N -0.72 -20.65 4.97 -319.03 -1.59 -22.23 16
7 C 0.26 9.77 6.63 38.20 0.25 10.03 16
8 C -0.27 -8.86 8.85 22.43 0.20 -8.66 16
9 C -0.03 -0.93 10.03 22.23 0.22 -0.71 16
10 C -0.27 -12.30 9.99 22.42 0.22 -12.08 16
11 C 0.15 8.15 6.64 22.56 0.15 8.30 16
12 O -0.23 -14.90 9.76 -22.79 -0.22 -15.12 16
13 C -0.41 -25.17 9.49 67.92 0.64 -24.53 16
14 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16
15 C -0.02 -1.42 5.49 84.83 0.47 -0.96 16
16 N -0.92 -58.64 13.67 21.61 0.30 -58.34 16
17 Si 1.02 44.69 29.55 68.60 2.03 46.72 16
18 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16
19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16
21 C -0.32 -15.03 9.01 22.52 0.20 -14.83 16
22 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16
23 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16
24 H 0.05 1.06 7.71 -2.38 -0.02 1.04 16
25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16
27 H 0.34 5.78 8.99 -89.70 -0.81 4.97 16
28 H 0.35 4.56 9.08 -89.69 -0.81 3.75 16
29 H 0.40 11.58 8.61 -92.70 -0.80 10.79 16
30 H 0.14 3.65 6.11 -2.91 -0.02 3.63 16
31 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16
32 H 0.10 4.80 8.06 -2.91 -0.02 4.77 16
33 H 0.27 15.82 8.31 -92.71 -0.77 15.04 16
34 H 0.11 5.31 5.64 -2.91 -0.02 5.29 16
Total: -1.00 -74.22 287.84 1.19 -73.03
By element:
Atomic # 1 Polarization: 34.86 SS G_CDS: -1.28 Total: 33.58 kcal
Atomic # 6 Polarization: -44.87 SS G_CDS: 3.70 Total: -41.17 kcal
Atomic # 7 Polarization: -94.01 SS G_CDS: -3.04 Total: -97.05 kcal
Atomic # 8 Polarization: -14.90 SS G_CDS: -0.22 Total: -15.12 kcal
Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal
Total: -74.22 1.19 -73.03 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235114869.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.558 kcal
(2) G-P(sol) polarization free energy of solvation -74.223 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.665 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.192 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.030 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.472 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds