Wall clock time and date at job start Mon Mar 30 2020 03:37:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53007 * 109.47096 * 2 1
4 4 O 1.42893 * 109.46926 * 179.97438 * 3 2 1
5 5 C 1.35918 * 116.99702 * 179.97438 * 4 3 2
6 6 C 1.39137 * 120.47312 * 0.02562 * 5 4 3
7 7 C 1.38539 * 118.37208 * 180.02562 * 6 5 4
8 8 C 1.38249 * 119.22143 * 0.25509 * 7 6 5
9 9 N 1.31848 * 120.88707 * 359.47296 * 8 7 6
10 10 C 1.31845 * 121.77992 * 0.53902 * 9 8 7
11 11 C 1.50697 * 119.65824 * 179.75112 * 10 9 8
12 12 H 1.09002 * 109.47146 * 194.97897 * 11 10 9
13 13 N 1.46901 * 109.47222 * 314.98035 * 11 10 9
14 14 C 1.50708 * 109.47187 * 74.97741 * 11 10 9
15 15 H 1.08004 * 119.99631 * 0.02562 * 14 11 10
16 16 C 1.37879 * 119.99959 * 180.02562 * 14 11 10
17 17 N 1.31517 * 119.99783 * 359.97438 * 16 14 11
18 18 Si 1.86791 * 119.99698 * 180.02562 * 16 14 11
19 19 H 1.48505 * 109.46948 * 90.00090 * 18 16 14
20 20 H 1.48504 * 109.47125 * 209.99549 * 18 16 14
21 21 H 1.48498 * 109.47539 * 330.00075 * 18 16 14
22 22 H 1.08998 * 109.47185 * 300.00063 * 1 2 3
23 23 H 1.08995 * 109.47201 * 60.00166 * 1 2 3
24 24 H 1.08997 * 109.46786 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47185 * 239.99937 * 2 1 3
26 26 H 1.09003 * 109.47055 * 119.99555 * 2 1 3
27 27 H 1.08998 * 109.47155 * 59.99918 * 3 2 1
28 28 H 1.09003 * 109.46805 * 299.99708 * 3 2 1
29 29 H 1.07994 * 120.81428 * 359.97438 * 6 5 4
30 30 H 1.08002 * 120.38514 * 179.97438 * 7 6 5
31 31 H 1.08002 * 119.55817 * 179.74528 * 8 7 6
32 32 H 1.00898 * 110.99718 * 296.04492 * 13 11 10
33 33 H 1.00896 * 111.00432 * 59.99917 * 13 11 10
34 34 H 0.96997 * 119.99322 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 3.4690 1.4425 0.0006
5 6 4.0860 2.6536 0.0001
6 6 3.3378 3.8267 -0.0003
7 6 4.0116 5.0372 -0.0013
8 6 5.3941 5.0401 -0.0072
9 7 6.0733 3.9101 -0.0014
10 6 5.4705 2.7376 -0.0004
11 6 6.2942 1.4756 0.0006
12 1 5.6614 0.6285 -0.2643
13 7 7.3816 1.5998 -0.9792
14 6 6.8772 1.2574 1.3731
15 1 6.6714 1.9619 2.1655
16 6 7.6732 0.1584 1.6172
17 7 7.9233 -0.6997 0.6524
18 14 8.3953 -0.1125 3.3185
19 1 7.4544 -0.9238 4.1321
20 1 9.6904 -0.8290 3.1983
21 1 8.6149 1.1999 3.9777
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0277 0.0005
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8900
27 1 1.6767 1.9564 0.8900
28 1 1.6767 1.9563 -0.8900
29 1 2.2584 3.7944 -0.0008
30 1 3.4632 5.9676 -0.0022
31 1 5.9248 5.9807 -0.0122
32 1 7.0164 1.6824 -1.9161
33 1 7.9828 2.3786 -0.7555
34 1 8.4831 -1.4730 0.8242
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238265785.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:07
Heat of formation + Delta-G solvation = -8.970235 kcal
Electronic energy + Delta-G solvation = -16690.238622 eV
Core-core repulsion = 14009.251343 eV
Total energy + Delta-G solvation = -2680.987280 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.15261 -37.84463 -34.50633 -33.83820 -31.75668 -30.84238 -29.32944 -26.52417
-25.94143 -23.59753 -22.44351 -21.43591 -20.19712 -17.68800 -16.61918 -16.20033
-16.00034 -15.57180 -14.37868 -14.25936 -14.10908 -13.80002 -13.59246 -12.95134
-12.88156 -12.34734 -12.14334 -12.08434 -11.66712 -11.41609 -11.07669 -10.84742
-10.66780 -10.62757 -10.54158 -9.90376 -9.33192 -9.01777 -8.84229 -8.29817
-7.69646 -6.92179 -5.75682 -3.87928 1.71900 1.79005 3.41349 3.47570
3.49680 3.52035 4.36910 4.61417 4.89995 4.91886 5.04351 5.11540
5.17288 5.23773 5.38372 5.41827 5.52211 5.58458 5.64228 5.73114
5.90573 6.09156 6.22811 6.31115 6.43492 6.59980 6.62555 6.98883
7.56326 7.78272 8.02603 8.30143 8.65935 8.83910 9.20531 9.27645
9.77582 11.29231
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.017821 B = 0.008867 C = 0.006765
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1570.820134 B = 3157.073086 C = 4137.696576
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.125 4.125
3 C 0.057 3.943
4 O -0.291 6.291
5 C 0.077 3.923
6 C -0.176 4.176
7 C -0.163 4.163
8 C 0.052 3.948
9 N -0.444 5.444
10 C 0.115 3.885
11 C 0.273 3.727
12 H 0.061 0.939
13 N -0.802 5.802
14 C -0.518 4.518
15 H 0.049 0.951
16 C 0.083 3.917
17 N -0.848 5.848
18 Si 0.884 3.116
19 H -0.283 1.283
20 H -0.286 1.286
21 H -0.276 1.276
22 H 0.055 0.945
23 H 0.054 0.946
24 H 0.062 0.938
25 H 0.075 0.925
26 H 0.077 0.923
27 H 0.056 0.944
28 H 0.054 0.946
29 H 0.127 0.873
30 H 0.124 0.876
31 H 0.147 0.853
32 H 0.293 0.707
33 H 0.328 0.672
34 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.275 6.186 -2.511 14.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.163 4.163
3 C -0.019 4.019
4 O -0.203 6.203
5 C 0.028 3.972
6 C -0.202 4.202
7 C -0.184 4.184
8 C -0.104 4.104
9 N -0.154 5.154
10 C -0.028 4.028
11 C 0.162 3.838
12 H 0.079 0.921
13 N -0.327 5.327
14 C -0.557 4.557
15 H 0.068 0.932
16 C -0.123 4.123
17 N -0.483 5.483
18 Si 0.712 3.288
19 H -0.209 1.209
20 H -0.212 1.212
21 H -0.201 1.201
22 H 0.074 0.926
23 H 0.073 0.927
24 H 0.081 0.919
25 H 0.094 0.906
26 H 0.096 0.904
27 H 0.074 0.926
28 H 0.072 0.928
29 H 0.145 0.855
30 H 0.142 0.858
31 H 0.164 0.836
32 H 0.102 0.898
33 H 0.140 0.860
34 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -11.955 5.098 -2.324 13.203
hybrid contribution -1.289 1.190 0.829 1.940
sum -13.244 6.288 -1.495 14.737
Atomic orbital electron populations
1.21680 0.94711 1.02263 1.01792 1.21471 0.95412 0.95070 1.04302
1.22807 0.79835 0.98674 1.00536 1.86253 1.19872 1.25931 1.88238
1.20114 0.93777 0.84504 0.98808 1.21572 0.99909 0.92640 1.06100
1.21731 0.95812 0.97526 1.03302 1.22602 0.91264 0.96807 0.99742
1.67629 1.39711 0.97410 1.10625 1.23327 0.89018 0.97152 0.93254
1.18192 0.87378 0.84997 0.93231 0.92092 1.59236 1.21574 1.49638
1.02210 1.20695 1.32545 1.08798 0.93658 0.93237 1.24893 0.95731
0.95711 0.95938 1.70109 1.35846 1.11689 1.30687 0.86752 0.78600
0.78132 0.85297 1.20900 1.21232 1.20097 0.92601 0.92673 0.91867
0.90642 0.90398 0.92605 0.92779 0.85477 0.85768 0.83603 0.89760
0.85995 0.93557
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16
2 C -0.12 -1.54 6.30 -26.73 -0.17 -1.71 16
3 C 0.06 0.80 4.76 37.16 0.18 0.98 16
4 O -0.29 -5.71 8.98 -19.48 -0.17 -5.88 16
5 C 0.08 1.55 6.67 -39.08 -0.26 1.29 16
6 C -0.18 -2.89 9.14 -39.14 -0.36 -3.24 16
7 C -0.16 -2.50 10.11 -39.47 -0.40 -2.90 16
8 C 0.05 0.90 11.18 -17.54 -0.20 0.71 16
9 N -0.44 -9.60 9.70 -9.35 -0.09 -9.69 16
10 C 0.12 2.66 5.67 -82.42 -0.47 2.19 16
11 C 0.27 7.21 2.84 -70.01 -0.20 7.01 16
12 H 0.06 1.75 7.13 -51.93 -0.37 1.38 16
13 N -0.80 -20.34 8.49 -6.65 -0.06 -20.39 16
14 C -0.52 -15.03 8.71 -34.44 -0.30 -15.33 16
15 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16
16 C 0.08 2.42 5.39 -17.82 -0.10 2.33 16
17 N -0.85 -25.44 12.77 55.43 0.71 -24.73 16
18 Si 0.88 22.19 29.54 -169.99 -5.02 17.17 16
19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16
20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16
24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16
26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16
27 H 0.06 0.72 7.70 -51.93 -0.40 0.32 16
28 H 0.05 0.66 7.70 -51.93 -0.40 0.26 16
29 H 0.13 1.67 6.45 -52.49 -0.34 1.33 16
30 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16
31 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16
32 H 0.29 6.72 9.06 -39.29 -0.36 6.36 16
33 H 0.33 8.23 8.54 -39.29 -0.34 7.90 16
34 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16
LS Contribution 290.92 15.07 4.38 4.38
Total: -1.00 -32.22 290.92 -6.85 -39.07
By element:
Atomic # 1 Polarization: 14.43 SS G_CDS: -4.70 Total: 9.73 kcal
Atomic # 6 Polarization: -7.76 SS G_CDS: -1.90 Total: -9.66 kcal
Atomic # 7 Polarization: -55.38 SS G_CDS: 0.56 Total: -54.82 kcal
Atomic # 8 Polarization: -5.71 SS G_CDS: -0.17 Total: -5.88 kcal
Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -32.22 -6.85 -39.07 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238265785.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.101 kcal
(2) G-P(sol) polarization free energy of solvation -32.221 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.121 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.071 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.970 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds