Wall clock time and date at job start Mon Mar 30 2020 03:37:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53007 * 109.47096 * 2 1
4 4 O 1.42893 * 109.46926 * 179.97438 * 3 2 1
5 5 C 1.35918 * 116.99702 * 179.97438 * 4 3 2
6 6 C 1.39137 * 120.47312 * 0.02562 * 5 4 3
7 7 C 1.38539 * 118.37208 * 180.02562 * 6 5 4
8 8 C 1.38249 * 119.22143 * 0.25509 * 7 6 5
9 9 N 1.31848 * 120.88707 * 359.47296 * 8 7 6
10 10 C 1.31845 * 121.77992 * 0.53902 * 9 8 7
11 11 C 1.50697 * 119.65824 * 179.75112 * 10 9 8
12 12 H 1.09002 * 109.47146 * 194.97897 * 11 10 9
13 13 N 1.46901 * 109.47222 * 314.98035 * 11 10 9
14 14 C 1.50708 * 109.47187 * 74.97741 * 11 10 9
15 15 H 1.08004 * 119.99631 * 0.02562 * 14 11 10
16 16 C 1.37879 * 119.99959 * 180.02562 * 14 11 10
17 17 N 1.31517 * 119.99783 * 359.97438 * 16 14 11
18 18 Si 1.86791 * 119.99698 * 180.02562 * 16 14 11
19 19 H 1.48505 * 109.46948 * 90.00090 * 18 16 14
20 20 H 1.48504 * 109.47125 * 209.99549 * 18 16 14
21 21 H 1.48498 * 109.47539 * 330.00075 * 18 16 14
22 22 H 1.08998 * 109.47185 * 300.00063 * 1 2 3
23 23 H 1.08995 * 109.47201 * 60.00166 * 1 2 3
24 24 H 1.08997 * 109.46786 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47185 * 239.99937 * 2 1 3
26 26 H 1.09003 * 109.47055 * 119.99555 * 2 1 3
27 27 H 1.08998 * 109.47155 * 59.99918 * 3 2 1
28 28 H 1.09003 * 109.46805 * 299.99708 * 3 2 1
29 29 H 1.07994 * 120.81428 * 359.97438 * 6 5 4
30 30 H 1.08002 * 120.38514 * 179.97438 * 7 6 5
31 31 H 1.08002 * 119.55817 * 179.74528 * 8 7 6
32 32 H 1.00898 * 110.99718 * 296.04492 * 13 11 10
33 33 H 1.00896 * 111.00432 * 59.99917 * 13 11 10
34 34 H 0.96997 * 119.99322 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 3.4690 1.4425 0.0006
5 6 4.0860 2.6536 0.0001
6 6 3.3378 3.8267 -0.0003
7 6 4.0116 5.0372 -0.0013
8 6 5.3941 5.0401 -0.0072
9 7 6.0733 3.9101 -0.0014
10 6 5.4705 2.7376 -0.0004
11 6 6.2942 1.4756 0.0006
12 1 5.6614 0.6285 -0.2643
13 7 7.3816 1.5998 -0.9792
14 6 6.8772 1.2574 1.3731
15 1 6.6714 1.9619 2.1655
16 6 7.6732 0.1584 1.6172
17 7 7.9233 -0.6997 0.6524
18 14 8.3953 -0.1125 3.3185
19 1 7.4544 -0.9238 4.1321
20 1 9.6904 -0.8290 3.1983
21 1 8.6149 1.1999 3.9777
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0277 0.0005
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8900
27 1 1.6767 1.9564 0.8900
28 1 1.6767 1.9563 -0.8900
29 1 2.2584 3.7944 -0.0008
30 1 3.4632 5.9676 -0.0022
31 1 5.9248 5.9807 -0.0122
32 1 7.0164 1.6824 -1.9161
33 1 7.9828 2.3786 -0.7555
34 1 8.4831 -1.4730 0.8242
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238265785.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:06
Heat of formation + Delta-G solvation = -32.584652 kcal
Electronic energy + Delta-G solvation = -16691.262620 eV
Core-core repulsion = 14009.251343 eV
Total energy + Delta-G solvation = -2682.011278 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.56510 -39.20310 -36.40573 -34.85680 -33.70318 -32.43547 -30.85525 -28.03553
-27.54968 -25.25515 -23.77628 -22.69096 -21.78200 -19.00637 -18.58094 -17.71923
-17.23168 -17.18082 -16.33128 -15.90151 -15.37438 -15.26789 -14.85193 -14.44046
-14.38520 -13.98503 -13.50599 -13.24686 -12.98848 -12.88076 -12.69515 -12.55747
-12.44184 -11.98491 -11.80696 -11.59055 -11.29594 -10.55168 -10.54491 -10.34528
-9.21155 -8.83725 -7.96059 -6.16152 0.31535 0.42299 1.40411 1.42056
1.52230 2.26879 2.46670 2.96513 3.26605 3.67669 3.82459 3.85888
3.93323 4.04145 4.22864 4.29395 4.38137 4.51557 4.54941 4.61134
4.80407 4.94660 5.08474 5.12618 5.16956 5.17673 5.33803 5.48540
5.68780 5.74555 6.18117 6.46781 6.64219 7.10620 7.22230 7.32847
7.53191 9.07989
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.017821 B = 0.008867 C = 0.006765
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1570.820134 B = 3157.073086 C = 4137.696576
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.126 4.126
3 C 0.049 3.951
4 O -0.327 6.327
5 C 0.060 3.940
6 C -0.166 4.166
7 C -0.139 4.139
8 C 0.040 3.960
9 N -0.474 5.474
10 C 0.070 3.930
11 C 0.279 3.721
12 H 0.023 0.977
13 N -0.810 5.810
14 C -0.533 4.533
15 H 0.033 0.967
16 C 0.034 3.966
17 N -0.880 5.880
18 Si 0.950 3.050
19 H -0.274 1.274
20 H -0.279 1.279
21 H -0.275 1.275
22 H 0.065 0.935
23 H 0.069 0.931
24 H 0.071 0.929
25 H 0.063 0.937
26 H 0.058 0.942
27 H 0.071 0.929
28 H 0.077 0.923
29 H 0.166 0.834
30 H 0.177 0.823
31 H 0.180 0.820
32 H 0.303 0.697
33 H 0.327 0.673
34 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.294 8.272 -2.007 17.503
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.164 4.164
3 C -0.025 4.025
4 O -0.240 6.240
5 C 0.012 3.988
6 C -0.193 4.193
7 C -0.158 4.158
8 C -0.117 4.117
9 N -0.184 5.184
10 C -0.071 4.071
11 C 0.169 3.831
12 H 0.041 0.959
13 N -0.335 5.335
14 C -0.572 4.572
15 H 0.052 0.948
16 C -0.169 4.169
17 N -0.516 5.516
18 Si 0.775 3.225
19 H -0.200 1.200
20 H -0.204 1.204
21 H -0.200 1.200
22 H 0.084 0.916
23 H 0.088 0.912
24 H 0.090 0.910
25 H 0.082 0.918
26 H 0.077 0.923
27 H 0.089 0.911
28 H 0.095 0.905
29 H 0.184 0.816
30 H 0.194 0.806
31 H 0.197 0.803
32 H 0.114 0.886
33 H 0.139 0.861
34 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -13.990 7.171 -1.819 15.825
hybrid contribution -0.771 0.658 0.631 1.194
sum -14.761 7.829 -1.188 16.751
Atomic orbital electron populations
1.21642 0.91671 1.03291 1.02979 1.21525 0.97892 0.94114 1.02836
1.23164 0.77230 0.99933 1.02198 1.86219 1.22865 1.26520 1.88397
1.20155 0.93252 0.86068 0.99325 1.22009 1.01689 0.91422 1.04139
1.22290 0.95111 0.99105 0.99318 1.23260 0.92871 0.96499 0.99069
1.67450 1.41370 0.98129 1.11423 1.22533 0.90233 0.96332 0.98016
1.17665 0.87246 0.86243 0.91981 0.95926 1.59089 1.21970 1.49686
1.02775 1.20932 1.32875 1.08614 0.94787 0.94822 1.25657 0.96114
0.95411 0.99735 1.70233 1.36535 1.12124 1.32682 0.85729 0.78072
0.77971 0.80732 1.19994 1.20413 1.20028 0.91566 0.91246 0.91008
0.91814 0.92301 0.91104 0.90533 0.81629 0.80593 0.80329 0.88649
0.86144 0.93499
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.23 9.91 71.98 0.71 -1.52 16
2 C -0.13 -3.08 6.30 30.60 0.19 -2.89 16
3 C 0.05 1.32 4.76 71.98 0.34 1.67 16
4 O -0.33 -13.11 8.98 -92.63 -0.83 -13.94 16
5 C 0.06 2.44 6.67 22.60 0.15 2.59 16
6 C -0.17 -4.90 9.14 22.56 0.21 -4.70 16
7 C -0.14 -3.62 10.11 22.34 0.23 -3.39 16
8 C 0.04 1.29 11.18 84.69 0.95 2.23 16
9 N -0.47 -20.46 9.70 -183.51 -1.78 -22.24 16
10 C 0.07 3.30 5.67 42.67 0.24 3.54 16
11 C 0.28 15.54 2.84 43.42 0.12 15.66 16
12 H 0.02 1.41 7.13 -2.39 -0.02 1.39 16
13 N -0.81 -43.04 8.49 -174.94 -1.48 -44.52 16
14 C -0.53 -32.23 8.71 25.60 0.22 -32.01 16
15 H 0.03 2.08 7.74 -2.91 -0.02 2.05 16
16 C 0.03 2.03 5.39 84.65 0.46 2.49 16
17 N -0.88 -54.51 12.77 21.45 0.27 -54.24 16
18 Si 0.95 46.63 29.54 68.60 2.03 48.66 16
19 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16
20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16
21 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16
22 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16
23 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16
24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16
25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
26 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16
27 H 0.07 1.66 7.70 -2.39 -0.02 1.64 16
28 H 0.08 1.68 7.70 -2.39 -0.02 1.66 16
29 H 0.17 3.52 6.45 -2.91 -0.02 3.50 16
30 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16
31 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16
32 H 0.30 14.65 9.06 -89.70 -0.81 13.84 16
33 H 0.33 17.14 8.54 -89.70 -0.77 16.37 16
34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16
Total: -1.00 -73.71 290.92 1.56 -72.16
By element:
Atomic # 1 Polarization: 30.93 SS G_CDS: -0.47 Total: 30.46 kcal
Atomic # 6 Polarization: -20.16 SS G_CDS: 3.82 Total: -16.34 kcal
Atomic # 7 Polarization: -118.01 SS G_CDS: -2.99 Total: -121.00 kcal
Atomic # 8 Polarization: -13.11 SS G_CDS: -0.83 Total: -13.94 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal
Total: -73.71 1.56 -72.16 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238265785.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.571 kcal
(2) G-P(sol) polarization free energy of solvation -73.715 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.585 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds