Wall clock time and date at job start Mon Mar 30 2020 03:37:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.46886 * 2 1
4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1
5 5 C 1.35676 * 116.99635 * 179.97438 * 4 3 2
6 6 N 1.32281 * 119.68734 * 359.73319 * 5 4 3
7 7 C 1.31935 * 121.64998 * 179.71079 * 6 5 4
8 8 C 1.38091 * 120.83035 * 0.55827 * 7 6 5
9 9 C 1.38784 * 119.28884 * 359.72731 * 8 7 6
10 10 C 1.38417 * 118.48761 * 0.02562 * 9 8 7
11 11 C 1.50701 * 120.44685 * 179.97438 * 10 9 8
12 12 H 1.09003 * 109.46960 * 220.01630 * 11 10 9
13 13 N 1.46897 * 109.46778 * 340.01154 * 11 10 9
14 14 C 1.50695 * 109.47622 * 100.01806 * 11 10 9
15 15 H 1.08005 * 119.99703 * 359.97438 * 14 11 10
16 16 C 1.37870 * 120.00371 * 180.02562 * 14 11 10
17 17 N 1.31511 * 120.00597 * 179.97438 * 16 14 11
18 18 Si 1.86803 * 119.99702 * 359.97438 * 16 14 11
19 19 H 1.48501 * 109.47269 * 90.00041 * 18 16 14
20 20 H 1.48501 * 109.47089 * 209.99655 * 18 16 14
21 21 H 1.48492 * 109.47264 * 330.00057 * 18 16 14
22 22 H 1.09000 * 109.47437 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47109 * 299.99380 * 1 2 3
24 24 H 1.09002 * 109.47508 * 59.99571 * 1 2 3
25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3
26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3
27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1
28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1
29 29 H 1.07995 * 119.58324 * 180.26658 * 7 6 5
30 30 H 1.08001 * 120.35846 * 179.74497 * 8 7 6
31 31 H 1.08005 * 120.75769 * 179.97438 * 9 8 7
32 32 H 1.00898 * 111.00745 * 296.04946 * 13 11 10
33 33 H 1.00900 * 111.00099 * 60.00730 * 13 11 10
34 34 H 0.96994 * 120.00507 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 8 3.4690 1.4425 -0.0006
5 6 4.0849 2.6514 -0.0012
6 7 3.3584 3.7568 -0.0066
7 6 3.9167 4.9522 -0.0017
8 6 5.2905 5.0917 -0.0023
9 6 6.0882 3.9560 -0.0024
10 6 5.4722 2.7165 -0.0023
11 6 6.2958 1.4544 -0.0030
12 1 5.8349 0.7202 -0.6637
13 7 7.6531 1.7558 -0.4769
14 6 6.3640 0.8983 1.3960
15 1 5.8615 1.4081 2.2048
16 6 7.0686 -0.2606 1.6436
17 7 7.1286 -0.7457 2.8645
18 14 7.9382 -1.1418 0.2447
19 1 9.3232 -0.6215 0.1168
20 1 7.9811 -2.5989 0.5283
21 1 7.2017 -0.9057 -1.0229
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3633 0.5137 0.8900
24 1 -0.3634 0.5139 -0.8899
25 1 1.8933 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8899
27 1 1.6765 1.9564 -0.8899
28 1 1.6767 1.9563 0.8900
29 1 3.2913 5.8327 -0.0020
30 1 5.7394 6.0740 -0.0025
31 1 7.1652 4.0375 -0.0032
32 1 7.6401 2.0695 -1.4358
33 1 8.1020 2.4346 0.1195
34 1 7.6246 -1.5608 3.0387
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238267346.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:01
Heat of formation + Delta-G solvation = -33.888663 kcal
Electronic energy + Delta-G solvation = -16819.890311 eV
Core-core repulsion = 14137.822487 eV
Total energy + Delta-G solvation = -2682.067824 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.60534 -39.00502 -37.04878 -34.83663 -34.15444 -32.43167 -31.03859 -28.43504
-27.43256 -25.16120 -23.78485 -22.55488 -21.76027 -19.37679 -19.02756 -17.83234
-17.31222 -16.87677 -16.46857 -16.01541 -15.42474 -15.28258 -15.20164 -14.57388
-14.34551 -13.96102 -13.59794 -13.53908 -13.12111 -12.98188 -12.69373 -12.36458
-12.32614 -11.97860 -11.77378 -11.57404 -11.52329 -10.74881 -10.66084 -10.53620
-9.42004 -9.18068 -8.23589 -6.35418 0.31747 0.38981 1.50244 1.57163
1.70900 2.20491 2.53167 2.90216 3.10298 3.43566 3.94132 3.95157
4.04261 4.06002 4.17838 4.28486 4.34364 4.40727 4.56249 4.62928
4.74952 4.81591 5.00566 5.08915 5.16345 5.17075 5.31540 5.34059
5.60807 5.67108 6.11774 6.38459 6.50592 6.73772 6.96168 6.97637
7.39526 8.90171
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.017210 B = 0.010414 C = 0.007200
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1626.553574 B = 2688.104052 C = 3887.889485
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.126 4.126
3 C 0.071 3.929
4 O -0.318 6.318
5 C 0.299 3.701
6 N -0.556 5.556
7 C 0.111 3.889
8 C -0.198 4.198
9 C -0.061 4.061
10 C -0.171 4.171
11 C 0.242 3.758
12 H 0.036 0.964
13 N -0.841 5.841
14 C -0.501 4.501
15 H 0.019 0.981
16 C 0.026 3.974
17 N -0.949 5.949
18 Si 1.002 2.998
19 H -0.270 1.270
20 H -0.324 1.324
21 H -0.265 1.265
22 H 0.075 0.925
23 H 0.059 0.941
24 H 0.068 0.932
25 H 0.070 0.930
26 H 0.055 0.945
27 H 0.068 0.932
28 H 0.054 0.946
29 H 0.193 0.807
30 H 0.174 0.826
31 H 0.152 0.848
32 H 0.335 0.665
33 H 0.343 0.657
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.899 9.785 -9.488 15.753
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.164 4.164
3 C -0.004 4.004
4 O -0.225 6.225
5 C 0.121 3.879
6 N -0.280 5.280
7 C -0.044 4.044
8 C -0.217 4.217
9 C -0.086 4.086
10 C -0.176 4.176
11 C 0.131 3.869
12 H 0.054 0.946
13 N -0.374 5.374
14 C -0.539 4.539
15 H 0.037 0.963
16 C -0.172 4.172
17 N -0.589 5.589
18 Si 0.832 3.168
19 H -0.196 1.196
20 H -0.254 1.254
21 H -0.190 1.190
22 H 0.094 0.906
23 H 0.079 0.921
24 H 0.087 0.913
25 H 0.088 0.912
26 H 0.074 0.926
27 H 0.087 0.913
28 H 0.072 0.928
29 H 0.209 0.791
30 H 0.191 0.809
31 H 0.170 0.830
32 H 0.149 0.851
33 H 0.159 0.841
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -8.493 8.539 -9.261 15.193
hybrid contribution 0.756 0.418 0.025 0.864
sum -7.737 8.957 -9.236 15.013
Atomic orbital electron populations
1.21627 0.91754 1.03300 1.02755 1.21562 0.97983 0.93958 1.02849
1.22760 0.77073 0.98874 1.01691 1.86360 1.23392 1.25226 1.87533
1.19841 0.89472 0.84769 0.93861 1.67319 1.41316 0.99342 1.20067
1.23003 0.94002 0.93622 0.93822 1.22287 0.94573 1.00291 1.04584
1.21553 1.01666 0.90534 0.94863 1.21216 0.92362 0.99253 1.04783
1.17977 0.84863 0.89421 0.94591 0.94615 1.58984 1.20005 1.51763
1.06623 1.20787 1.31934 1.08746 0.92434 0.96283 1.25837 0.95946
0.97382 0.98061 1.70085 1.43514 1.22753 1.22595 0.84824 0.79558
0.73228 0.79222 1.19598 1.25413 1.19037 0.90568 0.92149 0.91276
0.91164 0.92601 0.91330 0.92802 0.79062 0.80893 0.83014 0.85118
0.84127 0.92719
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.86 9.91 71.98 0.71 -2.15 16
2 C -0.13 -3.69 6.30 30.59 0.19 -3.50 16
3 C 0.07 2.43 5.31 71.98 0.38 2.81 16
4 O -0.32 -14.02 9.37 -89.94 -0.84 -14.86 16
5 C 0.30 12.63 7.46 84.78 0.63 13.27 16
6 N -0.56 -19.98 9.22 -308.93 -2.85 -22.83 16
7 C 0.11 3.06 11.18 84.64 0.95 4.00 16
8 C -0.20 -5.10 10.11 22.37 0.23 -4.87 16
9 C -0.06 -1.97 9.35 22.44 0.21 -1.76 16
10 C -0.17 -7.16 5.04 -19.67 -0.10 -7.26 16
11 C 0.24 11.53 2.01 43.42 0.09 11.62 16
12 H 0.04 1.86 6.93 -2.39 -0.02 1.84 16
13 N -0.84 -33.58 6.26 -174.96 -1.09 -34.68 16
14 C -0.50 -29.49 9.29 25.60 0.24 -29.25 16
15 H 0.02 1.27 7.98 -2.91 -0.02 1.24 16
16 C 0.03 1.58 5.47 84.65 0.46 2.04 16
17 N -0.95 -61.24 13.96 21.44 0.30 -60.94 16
18 Si 1.00 50.51 26.03 68.60 1.79 52.30 16
19 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16
20 H -0.32 -16.46 7.11 99.48 0.71 -15.75 16
21 H -0.27 -12.87 6.54 99.48 0.65 -12.22 16
22 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16
23 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
27 H 0.07 2.12 8.10 -2.39 -0.02 2.10 16
28 H 0.05 1.85 8.11 -2.39 -0.02 1.83 16
29 H 0.19 3.52 8.06 -2.91 -0.02 3.50 16
30 H 0.17 2.90 8.06 -2.91 -0.02 2.87 16
31 H 0.15 4.20 6.37 -2.91 -0.02 4.19 16
32 H 0.34 11.00 9.06 -89.70 -0.81 10.19 16
33 H 0.34 12.73 7.34 -89.69 -0.66 12.07 16
34 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16
Total: -1.00 -74.59 286.04 0.87 -73.72
By element:
Atomic # 1 Polarization: 22.76 SS G_CDS: -0.42 Total: 22.35 kcal
Atomic # 6 Polarization: -19.05 SS G_CDS: 3.99 Total: -15.06 kcal
Atomic # 7 Polarization: -114.81 SS G_CDS: -3.64 Total: -118.45 kcal
Atomic # 8 Polarization: -14.02 SS G_CDS: -0.84 Total: -14.86 kcal
Atomic # 14 Polarization: 50.51 SS G_CDS: 1.79 Total: 52.30 kcal
Total: -74.59 0.87 -73.72 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238267346.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.830 kcal
(2) G-P(sol) polarization free energy of solvation -74.593 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.763 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.719 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.889 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds