Wall clock time and date at job start Mon Mar 30 2020 03:21:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47232 * 2 1
4 4 C 1.52999 * 109.47317 * 239.99633 * 2 1 3
5 5 N 1.46506 * 109.46684 * 59.99944 * 4 2 1
6 6 C 1.34777 * 119.99873 * 179.97438 * 5 4 2
7 7 O 1.21690 * 120.00222 * 0.02562 * 6 5 4
8 8 C 1.46376 * 120.00195 * 179.97438 * 6 5 4
9 9 H 1.07999 * 119.99764 * 0.02562 * 8 6 5
10 10 C 1.40050 * 120.00255 * 179.97438 * 8 6 5
11 11 N 1.30668 * 119.99760 * 0.02562 * 10 8 6
12 12 Si 1.86800 * 119.99851 * 180.02562 * 10 8 6
13 13 H 1.48500 * 109.47035 * 60.00572 * 12 10 8
14 14 H 1.48503 * 109.46848 * 180.02562 * 12 10 8
15 15 H 1.48498 * 109.47295 * 299.99972 * 12 10 8
16 16 C 1.50706 * 109.47238 * 120.00114 * 2 1 3
17 17 C 1.34848 * 125.88717 * 299.99825 * 16 2 1
18 18 C 1.40892 * 107.41604 * 180.02562 * 17 16 2
19 19 C 1.34845 * 107.41758 * 359.97438 * 18 17 16
20 20 N 1.36335 * 125.89503 * 119.68859 * 16 2 1
21 21 H 0.97007 * 125.63051 * 0.02562 * 20 16 2
22 22 H 1.09001 * 109.46832 * 300.00199 * 1 2 3
23 23 H 1.09002 * 109.47153 * 60.00008 * 1 2 3
24 24 H 1.08996 * 109.46952 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47140 * 180.02562 * 3 2 1
26 26 H 1.09001 * 109.47230 * 299.99295 * 3 2 1
27 27 H 1.09001 * 109.47375 * 60.00133 * 3 2 1
28 28 H 1.09000 * 109.47486 * 180.02562 * 4 2 1
29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1
30 30 H 0.96999 * 120.00080 * 0.02562 * 5 4 2
31 31 H 0.97005 * 119.99882 * 179.97438 * 11 10 8
32 32 H 1.08005 * 126.29553 * 0.02562 * 17 16 2
33 33 H 1.08002 * 126.28825 * 179.97438 * 18 17 16
34 34 H 1.08001 * 125.89187 * 180.02562 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 7 1.5516 -0.0307 -2.4454
6 6 1.8777 -0.4909 -3.6695
7 8 2.5773 -1.4803 -3.7812
8 6 1.3893 0.1987 -4.8647
9 1 0.7680 1.0766 -4.7656
10 6 1.7285 -0.2791 -6.1367
11 7 2.4806 -1.3409 -6.2565
12 14 1.1058 0.6015 -7.6619
13 1 1.5998 2.0019 -7.6613
14 1 1.6013 -0.0983 -8.8744
15 1 -0.3792 0.6004 -7.6625
16 6 2.0324 -0.7105 1.2305
17 6 1.7809 -0.3548 2.5067
18 6 2.4373 -1.2820 3.3400
19 6 3.0643 -2.1692 2.5414
20 7 2.8145 -1.8270 1.2455
21 1 3.1420 -2.2981 0.4633
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 3.1300 1.4424 -0.0005
26 1 1.6768 1.9563 -0.8901
27 1 1.6767 1.9563 0.8900
28 1 3.1300 -0.7217 -1.2490
29 1 1.6766 -1.7490 -1.2492
30 1 0.9943 0.7582 -2.3564
31 1 2.7152 -1.6721 -7.1375
32 1 1.1857 0.4863 2.8305
33 1 2.4380 -1.2820 4.4201
34 1 3.6580 -3.0089 2.8713
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000258732886.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:57
Heat of formation + Delta-G solvation = -8.200652 kcal
Electronic energy + Delta-G solvation = -16583.092610 eV
Core-core repulsion = 13902.138702 eV
Total energy + Delta-G solvation = -2680.953908 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.12908 -37.81937 -35.84880 -32.63369 -31.69829 -30.78084 -27.84422 -27.04518
-26.96470 -24.99445 -21.43714 -20.29366 -19.67492 -19.03444 -17.73383 -16.52985
-15.32758 -14.60998 -14.57157 -14.21283 -13.70495 -13.53381 -13.52585 -13.20741
-12.50063 -12.48360 -12.29900 -11.93975 -11.89846 -11.34958 -11.28651 -10.99503
-10.87492 -10.68368 -10.52840 -10.38253 -10.21301 -8.86400 -8.69722 -7.84618
-7.65647 -7.53614 -6.20635 -4.66151 2.45921 3.14696 3.16979 3.19600
3.21407 3.51398 4.08813 4.56930 4.67508 4.98458 5.17029 5.20587
5.31468 5.46216 5.63284 5.76701 5.81312 5.86873 5.99121 6.01062
6.14054 6.29870 6.30748 6.33308 6.47211 6.53083 6.55125 7.16729
7.31485 7.41327 7.75668 7.90062 8.05850 8.30241 9.00541 9.50568
10.57831 10.76112
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.051232 B = 0.005317 C = 0.004981
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 546.397191 B = 5264.558563 C = 5619.898613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.009 4.009
3 C -0.132 4.132
4 C 0.139 3.861
5 N -0.762 5.762
6 C 0.554 3.446
7 O -0.583 6.583
8 C -0.546 4.546
9 H 0.067 0.933
10 C 0.088 3.912
11 N -0.769 5.769
12 Si 0.908 3.092
13 H -0.268 1.268
14 H -0.281 1.281
15 H -0.268 1.268
16 C 0.045 3.955
17 C -0.201 4.201
18 C -0.204 4.204
19 C -0.023 4.023
20 N -0.554 5.554
21 H 0.416 0.584
22 H 0.057 0.943
23 H 0.065 0.935
24 H 0.055 0.945
25 H 0.055 0.945
26 H 0.065 0.935
27 H 0.057 0.943
28 H 0.045 0.955
29 H 0.045 0.955
30 H 0.381 0.619
31 H 0.269 0.731
32 H 0.130 0.870
33 H 0.130 0.870
34 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.049 2.888 13.546 14.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.010 4.010
3 C -0.190 4.190
4 C 0.014 3.986
5 N -0.419 5.419
6 C 0.358 3.642
7 O -0.467 6.467
8 C -0.583 4.583
9 H 0.085 0.915
10 C -0.132 4.132
11 N -0.397 5.397
12 Si 0.733 3.267
13 H -0.193 1.193
14 H -0.206 1.206
15 H -0.193 1.193
16 C -0.070 4.070
17 C -0.226 4.226
18 C -0.229 4.229
19 C -0.154 4.154
20 N -0.148 5.148
21 H 0.254 0.746
22 H 0.076 0.924
23 H 0.084 0.916
24 H 0.074 0.926
25 H 0.074 0.926
26 H 0.084 0.916
27 H 0.076 0.924
28 H 0.064 0.936
29 H 0.063 0.937
30 H 0.214 0.786
31 H 0.079 0.921
32 H 0.148 0.852
33 H 0.148 0.852
34 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -1.367 1.918 13.218 13.426
hybrid contribution -0.336 0.476 -0.937 1.103
sum -1.704 2.393 12.281 12.627
Atomic orbital electron populations
1.21821 0.92995 1.02273 1.01894 1.19380 0.96134 0.95191 0.90292
1.21819 1.01303 0.93964 1.01892 1.20866 0.97741 0.95432 0.84610
1.46117 1.57847 1.32963 1.04930 1.18223 0.80253 0.84205 0.81491
1.90590 1.41711 1.28391 1.85972 1.20843 1.34059 1.13779 0.89578
0.91466 1.25703 0.93344 0.94110 1.00029 1.70010 1.26925 1.18626
1.24185 0.86433 0.79748 0.80038 0.80518 1.19266 1.20573 1.19270
1.20231 0.99802 0.91031 0.95889 1.20532 1.07585 1.03084 0.91373
1.20816 1.04812 0.98587 0.98686 1.21769 1.07244 1.03349 0.83031
1.42131 1.40996 1.23581 1.08100 0.74647 0.92438 0.91606 0.92587
0.92582 0.91613 0.92431 0.93642 0.93652 0.78605 0.92069 0.85189
0.85191 0.82318
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.80 8.17 37.16 0.30 -1.50 16
2 C -0.01 -0.13 0.68 -155.66 -0.11 -0.23 16
3 C -0.13 -1.80 8.17 37.16 0.30 -1.50 16
4 C 0.14 2.64 3.60 -4.04 -0.01 2.62 16
5 N -0.76 -16.66 4.95 -61.72 -0.31 -16.97 16
6 C 0.55 15.65 7.75 -12.99 -0.10 15.55 16
7 O -0.58 -18.81 15.02 5.20 0.08 -18.73 16
8 C -0.55 -15.30 9.54 -35.63 -0.34 -15.64 16
9 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16
10 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16
11 N -0.77 -23.03 11.83 55.55 0.66 -22.37 16
12 Si 0.91 20.03 29.56 -169.99 -5.02 15.01 16
13 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16
15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
16 C 0.04 0.64 5.57 -81.79 -0.46 0.19 16
17 C -0.20 -2.73 10.14 -39.78 -0.40 -3.14 16
18 C -0.20 -2.59 10.86 -39.78 -0.43 -3.02 16
19 C -0.02 -0.28 11.94 -16.75 -0.20 -0.48 16
20 N -0.55 -7.58 5.82 -9.12 -0.05 -7.63 16
21 H 0.42 5.49 7.99 -40.82 -0.33 5.16 16
22 H 0.06 0.67 7.99 -51.93 -0.42 0.26 16
23 H 0.07 0.90 6.86 -51.93 -0.36 0.54 16
24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.06 0.90 6.86 -51.93 -0.36 0.54 16
27 H 0.06 0.67 8.00 -51.93 -0.42 0.26 16
28 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16
29 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16
30 H 0.38 7.32 6.14 -40.82 -0.25 7.07 16
31 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16
32 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16
33 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16
34 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16
LS Contribution 286.99 15.07 4.32 4.32
Total: -1.00 -34.01 286.99 -6.48 -40.49
By element:
Atomic # 1 Polarization: 15.29 SS G_CDS: -4.62 Total: 10.67 kcal
Atomic # 6 Polarization: -3.26 SS G_CDS: -1.54 Total: -4.80 kcal
Atomic # 7 Polarization: -47.27 SS G_CDS: 0.30 Total: -46.98 kcal
Atomic # 8 Polarization: -18.81 SS G_CDS: 0.08 Total: -18.73 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -34.01 -6.48 -40.49 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258732886.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.292 kcal
(2) G-P(sol) polarization free energy of solvation -34.012 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.720 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.201 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds