Wall clock time and date at job start Mon Mar 30 2020 03:21:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47232 * 2 1
4 4 C 1.52999 * 109.47317 * 239.99633 * 2 1 3
5 5 N 1.46506 * 109.46684 * 59.99944 * 4 2 1
6 6 C 1.34777 * 119.99873 * 179.97438 * 5 4 2
7 7 O 1.21690 * 120.00222 * 0.02562 * 6 5 4
8 8 C 1.46376 * 120.00195 * 179.97438 * 6 5 4
9 9 H 1.07999 * 119.99764 * 0.02562 * 8 6 5
10 10 C 1.40050 * 120.00255 * 179.97438 * 8 6 5
11 11 N 1.30668 * 119.99760 * 0.02562 * 10 8 6
12 12 Si 1.86800 * 119.99851 * 180.02562 * 10 8 6
13 13 H 1.48500 * 109.47035 * 60.00572 * 12 10 8
14 14 H 1.48503 * 109.46848 * 180.02562 * 12 10 8
15 15 H 1.48498 * 109.47295 * 299.99972 * 12 10 8
16 16 C 1.50706 * 109.47238 * 120.00114 * 2 1 3
17 17 C 1.34848 * 125.88717 * 299.99825 * 16 2 1
18 18 C 1.40892 * 107.41604 * 180.02562 * 17 16 2
19 19 C 1.34845 * 107.41758 * 359.97438 * 18 17 16
20 20 N 1.36335 * 125.89503 * 119.68859 * 16 2 1
21 21 H 0.97007 * 125.63051 * 0.02562 * 20 16 2
22 22 H 1.09001 * 109.46832 * 300.00199 * 1 2 3
23 23 H 1.09002 * 109.47153 * 60.00008 * 1 2 3
24 24 H 1.08996 * 109.46952 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47140 * 180.02562 * 3 2 1
26 26 H 1.09001 * 109.47230 * 299.99295 * 3 2 1
27 27 H 1.09001 * 109.47375 * 60.00133 * 3 2 1
28 28 H 1.09000 * 109.47486 * 180.02562 * 4 2 1
29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1
30 30 H 0.96999 * 120.00080 * 0.02562 * 5 4 2
31 31 H 0.97005 * 119.99882 * 179.97438 * 11 10 8
32 32 H 1.08005 * 126.29553 * 0.02562 * 17 16 2
33 33 H 1.08002 * 126.28825 * 179.97438 * 18 17 16
34 34 H 1.08001 * 125.89187 * 180.02562 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 7 1.5516 -0.0307 -2.4454
6 6 1.8777 -0.4909 -3.6695
7 8 2.5773 -1.4803 -3.7812
8 6 1.3893 0.1987 -4.8647
9 1 0.7680 1.0766 -4.7656
10 6 1.7285 -0.2791 -6.1367
11 7 2.4806 -1.3409 -6.2565
12 14 1.1058 0.6015 -7.6619
13 1 1.5998 2.0019 -7.6613
14 1 1.6013 -0.0983 -8.8744
15 1 -0.3792 0.6004 -7.6625
16 6 2.0324 -0.7105 1.2305
17 6 1.7809 -0.3548 2.5067
18 6 2.4373 -1.2820 3.3400
19 6 3.0643 -2.1692 2.5414
20 7 2.8145 -1.8270 1.2455
21 1 3.1420 -2.2981 0.4633
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0276 0.0005
25 1 3.1300 1.4424 -0.0005
26 1 1.6768 1.9563 -0.8901
27 1 1.6767 1.9563 0.8900
28 1 3.1300 -0.7217 -1.2490
29 1 1.6766 -1.7490 -1.2492
30 1 0.9943 0.7582 -2.3564
31 1 2.7152 -1.6721 -7.1375
32 1 1.1857 0.4863 2.8305
33 1 2.4380 -1.2820 4.4201
34 1 3.6580 -3.0089 2.8713
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000258732886.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:56
Heat of formation + Delta-G solvation = -31.915957 kcal
Electronic energy + Delta-G solvation = -16584.120983 eV
Core-core repulsion = 13902.138702 eV
Total energy + Delta-G solvation = -2681.982281 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-42.17784 -39.64455 -37.50214 -34.70471 -33.57148 -31.83824 -29.08729 -28.71851
-28.15310 -26.71292 -22.76449 -21.72109 -20.98281 -20.31047 -19.52262 -17.98353
-17.30223 -16.24090 -15.99801 -15.94839 -15.04431 -14.88322 -14.73968 -14.41227
-14.12595 -14.06856 -13.49495 -13.18537 -13.14568 -12.90956 -12.80450 -12.62046
-12.61559 -12.13273 -12.01023 -12.00579 -11.67256 -10.92457 -9.90740 -9.71897
-9.50856 -8.86718 -8.30223 -6.86583 1.40481 1.43522 1.43796 1.55520
2.17694 2.24412 2.46212 2.49489 3.06431 3.59471 3.71341 3.85120
3.98789 4.25158 4.44891 4.63237 4.67826 4.68129 4.84702 4.85493
4.94281 4.97076 5.06983 5.22914 5.31065 5.38503 5.45094 5.49409
5.86023 6.16298 6.20026 6.25296 6.31247 6.72569 6.85945 7.52751
8.47348 8.66013
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.051232 B = 0.005317 C = 0.004981
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 546.397191 B = 5264.558563 C = 5619.898613
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.004 3.996
3 C -0.129 4.129
4 C 0.145 3.855
5 N -0.746 5.746
6 C 0.536 3.464
7 O -0.635 6.635
8 C -0.573 4.573
9 H 0.089 0.911
10 C 0.029 3.971
11 N -0.823 5.823
12 Si 0.998 3.002
13 H -0.254 1.254
14 H -0.276 1.276
15 H -0.254 1.254
16 C 0.019 3.981
17 C -0.201 4.201
18 C -0.216 4.216
19 C -0.023 4.023
20 N -0.564 5.564
21 H 0.414 0.586
22 H 0.083 0.917
23 H 0.063 0.937
24 H 0.043 0.957
25 H 0.043 0.957
26 H 0.063 0.937
27 H 0.083 0.917
28 H 0.027 0.973
29 H 0.027 0.973
30 H 0.396 0.604
31 H 0.274 0.726
32 H 0.146 0.854
33 H 0.152 0.848
34 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.210 4.530 14.244 15.288
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.003 3.997
3 C -0.187 4.187
4 C 0.020 3.980
5 N -0.402 5.402
6 C 0.341 3.659
7 O -0.523 6.523
8 C -0.609 4.609
9 H 0.107 0.893
10 C -0.186 4.186
11 N -0.452 5.452
12 Si 0.817 3.183
13 H -0.177 1.177
14 H -0.200 1.200
15 H -0.178 1.178
16 C -0.095 4.095
17 C -0.226 4.226
18 C -0.240 4.240
19 C -0.154 4.154
20 N -0.159 5.159
21 H 0.250 0.750
22 H 0.102 0.898
23 H 0.082 0.918
24 H 0.063 0.937
25 H 0.063 0.937
26 H 0.082 0.918
27 H 0.102 0.898
28 H 0.045 0.955
29 H 0.045 0.955
30 H 0.232 0.768
31 H 0.084 0.916
32 H 0.164 0.836
33 H 0.170 0.830
34 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges -2.559 3.603 13.975 14.657
hybrid contribution 0.055 -0.078 -1.044 1.049
sum -2.504 3.525 12.931 13.634
Atomic orbital electron populations
1.21814 0.91900 1.01909 1.03067 1.19254 0.96875 0.95389 0.88192
1.21813 1.00583 0.93222 1.03066 1.20890 0.96623 0.94986 0.85494
1.45746 1.57040 1.33065 1.04319 1.18639 0.79940 0.83826 0.83534
1.90545 1.43978 1.30561 1.87180 1.21408 1.34621 1.14648 0.90271
0.89266 1.26981 0.92889 0.94635 1.04117 1.70185 1.28631 1.20849
1.25574 0.85065 0.79555 0.78769 0.74875 1.17750 1.20049 1.17761
1.20253 1.01303 0.91951 0.95985 1.20807 1.07300 1.03511 0.90936
1.21170 1.04651 0.98349 0.99863 1.22343 1.06825 1.03910 0.82300
1.42285 1.41221 1.23678 1.08713 0.74979 0.89820 0.91802 0.93739
0.93737 0.91809 0.89810 0.95459 0.95455 0.76830 0.91605 0.83619
0.83037 0.79597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.34 8.17 71.98 0.59 -2.75 16
2 C 0.00 0.12 0.68 -52.93 -0.04 0.08 16
3 C -0.13 -3.34 8.17 71.98 0.59 -2.75 16
4 C 0.15 5.67 3.60 86.38 0.31 5.98 16
5 N -0.75 -33.19 4.95 -467.39 -2.32 -35.51 16
6 C 0.54 31.15 7.75 86.36 0.67 31.82 16
7 O -0.63 -42.78 15.02 -4.32 -0.06 -42.84 16
8 C -0.57 -32.31 9.54 24.83 0.24 -32.08 16
9 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16
10 C 0.03 1.60 5.50 85.31 0.47 2.07 16
11 N -0.82 -50.53 11.83 21.84 0.26 -50.28 16
12 Si 1.00 40.66 29.56 68.60 2.03 42.69 16
13 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16
14 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16
15 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16
16 C 0.02 0.52 5.57 41.08 0.23 0.75 16
17 C -0.20 -5.01 10.14 22.14 0.22 -4.79 16
18 C -0.22 -4.97 10.86 22.14 0.24 -4.73 16
19 C -0.02 -0.53 11.94 83.21 0.99 0.46 16
20 N -0.56 -15.31 5.82 -182.77 -1.06 -16.37 16
21 H 0.41 11.31 7.99 -92.70 -0.74 10.57 16
22 H 0.08 1.73 7.99 -2.39 -0.02 1.71 16
23 H 0.06 1.65 6.86 -2.39 -0.02 1.63 16
24 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
26 H 0.06 1.65 6.86 -2.39 -0.02 1.63 16
27 H 0.08 1.73 8.00 -2.39 -0.02 1.71 16
28 H 0.03 1.16 8.07 -2.39 -0.02 1.14 16
29 H 0.03 1.16 8.06 -2.39 -0.02 1.14 16
30 H 0.40 15.09 6.14 -92.71 -0.57 14.52 16
31 H 0.27 15.28 8.29 -92.70 -0.77 14.51 16
32 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16
33 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16
34 H 0.19 3.03 8.06 -2.91 -0.02 3.01 16
Total: -1.00 -75.31 286.99 3.16 -72.16
By element:
Atomic # 1 Polarization: 36.28 SS G_CDS: -0.20 Total: 36.08 kcal
Atomic # 6 Polarization: -10.44 SS G_CDS: 4.51 Total: -5.92 kcal
Atomic # 7 Polarization: -99.04 SS G_CDS: -3.12 Total: -102.16 kcal
Atomic # 8 Polarization: -42.78 SS G_CDS: -0.06 Total: -42.84 kcal
Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal
Total: -75.31 3.16 -72.16 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258732886.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.241 kcal
(2) G-P(sol) polarization free energy of solvation -75.314 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds