Wall clock time and date at job start Mon Mar 30 2020 03:00:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.34485 * 126.16496 * 2 1
4 4 C 1.30250 * 108.70025 * 180.02562 * 3 2 1
5 5 O 1.33974 * 108.76338 * 359.97438 * 4 3 2
6 6 C 1.34325 * 126.16735 * 180.02562 * 2 1 3
7 7 C 1.50702 * 126.44374 * 359.95864 * 6 2 1
8 8 H 1.08997 * 109.52072 * 359.89509 * 7 6 2
9 9 C 1.53121 * 109.52032 * 120.02124 * 7 6 2
10 10 C 1.53034 * 109.27999 * 62.25396 * 9 7 6
11 11 N 1.46849 * 109.52414 * 59.17527 * 10 9 7
12 12 C 1.46848 * 111.19701 * 298.26153 * 11 10 9
13 13 H 1.08997 * 109.45989 * 301.72415 * 12 11 10
14 14 C 1.50700 * 109.45763 * 181.74848 * 12 11 10
15 15 H 1.08005 * 119.99414 * 239.99755 * 14 12 11
16 16 C 1.37870 * 120.00755 * 59.99955 * 14 12 11
17 17 N 1.31518 * 119.99538 * 359.97438 * 16 14 12
18 18 Si 1.86802 * 120.00728 * 179.97438 * 16 14 12
19 19 H 1.48496 * 109.46958 * 89.99522 * 18 16 14
20 20 H 1.48494 * 109.47221 * 210.00024 * 18 16 14
21 21 H 1.48499 * 109.46628 * 329.99665 * 18 16 14
22 22 C 1.53031 * 109.52444 * 61.74035 * 12 11 10
23 23 H 1.09001 * 109.47394 * 89.97807 * 1 2 3
24 24 H 1.09005 * 109.47558 * 209.97543 * 1 2 3
25 25 H 1.09005 * 109.47337 * 329.97480 * 1 2 3
26 26 H 1.07997 * 125.62207 * 179.97438 * 4 3 2
27 27 H 1.09009 * 109.50138 * 182.19733 * 9 7 6
28 28 H 1.08995 * 109.50420 * 302.26485 * 9 7 6
29 29 H 1.09002 * 109.46283 * 179.19238 * 10 9 7
30 30 H 1.09001 * 109.46046 * 299.16137 * 10 9 7
31 31 H 1.00903 * 110.99673 * 62.35594 * 11 10 9
32 32 H 0.97004 * 119.99837 * 179.97438 * 17 16 14
33 33 H 1.09002 * 109.50179 * 180.87311 * 22 12 11
34 34 H 1.09005 * 109.50267 * 60.76059 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.3006 1.0857 0.0000
4 6 3.5430 0.6948 -0.0006
5 8 3.5734 -0.6446 -0.0003
6 6 2.2997 -1.0844 -0.0005
7 6 1.8493 -2.5225 -0.0003
8 1 0.7601 -2.5631 0.0023
9 6 2.3847 -3.2266 -1.2502
10 6 3.9147 -3.2184 -1.2184
11 7 4.3841 -3.9058 -0.0085
12 6 3.9216 -3.2202 1.2049
13 1 4.2792 -2.1906 1.1990
14 6 4.4597 -3.9317 2.4195
15 1 3.7788 -4.3486 3.1469
16 6 5.8211 -4.0504 2.6023
17 7 6.6501 -3.5431 1.7163
18 14 6.4882 -4.9317 4.1082
19 1 6.6537 -6.3757 3.8038
20 1 7.8029 -4.3502 4.4801
21 1 5.5380 -4.7697 5.2378
22 6 2.3918 -3.2285 1.2454
23 1 -0.3634 0.0004 -1.0277
24 1 -0.3634 -0.8902 0.5135
25 1 -0.3634 0.8898 0.5142
26 1 4.4065 1.3435 -0.0011
27 1 2.0265 -4.2560 -1.2696
28 1 2.0358 -2.7032 -2.1403
29 1 4.2990 -3.7316 -2.0999
30 1 4.2723 -2.1888 -1.2129
31 1 4.0980 -4.8734 -0.0085
32 1 7.6080 -3.6263 1.8450
33 1 2.0486 -2.7060 2.1384
34 1 2.0338 -4.2578 1.2653
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259392880.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:04
Heat of formation + Delta-G solvation = 15.875013 kcal
Electronic energy + Delta-G solvation = -17504.184652 eV
Core-core repulsion = 14824.274743 eV
Total energy + Delta-G solvation = -2679.909909 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-42.94849 -37.98437 -34.75092 -33.06362 -31.89105 -30.00511 -29.85221 -26.73169
-25.09409 -23.26617 -21.68362 -21.14140 -20.79224 -19.02229 -16.55616 -16.33756
-16.22874 -14.84612 -14.49907 -14.32898 -13.75349 -13.59683 -13.26762 -13.06809
-12.72411 -12.41716 -12.08490 -11.98368 -11.57279 -11.19491 -10.90302 -10.75828
-10.62230 -10.54031 -10.36016 -10.05689 -9.79043 -9.56981 -8.87345 -8.36627
-8.16050 -6.76065 -5.83733 -3.98401 1.95731 3.03653 3.27426 3.34735
3.41697 3.44149 4.49632 4.52331 5.01009 5.14520 5.26778 5.37234
5.39771 5.57785 5.70813 5.79747 5.87287 5.91445 5.99750 6.13359
6.25716 6.31889 6.44280 6.45885 6.49267 6.71151 6.77157 6.90780
6.97002 7.63435 7.93393 8.13985 8.29425 8.65960 8.97909 9.18239
9.69959 11.20133
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031694 B = 0.008051 C = 0.007659
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 883.224013 B = 3477.124048 C = 3654.790046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C -0.043 4.043
3 N -0.492 5.492
4 C 0.152 3.848
5 O -0.170 6.170
6 C -0.004 4.004
7 C -0.008 4.008
8 H 0.086 0.914
9 C -0.152 4.152
10 C 0.052 3.948
11 N -0.644 5.644
12 C 0.219 3.781
13 H 0.052 0.948
14 C -0.539 4.539
15 H 0.052 0.948
16 C 0.084 3.916
17 N -0.845 5.845
18 Si 0.880 3.120
19 H -0.281 1.281
20 H -0.288 1.288
21 H -0.276 1.276
22 C -0.144 4.144
23 H 0.067 0.933
24 H 0.070 0.930
25 H 0.070 0.930
26 H 0.242 0.758
27 H 0.065 0.935
28 H 0.053 0.947
29 H 0.053 0.947
30 H 0.069 0.931
31 H 0.318 0.682
32 H 0.255 0.745
33 H 0.056 0.944
34 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.816 3.798 -5.294 10.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.163 4.163
3 N -0.222 5.222
4 C -0.074 4.074
5 O -0.054 6.054
6 C -0.058 4.058
7 C -0.027 4.027
8 H 0.104 0.896
9 C -0.192 4.192
10 C -0.079 4.079
11 N -0.271 5.271
12 C 0.111 3.889
13 H 0.070 0.930
14 C -0.578 4.578
15 H 0.070 0.930
16 C -0.123 4.123
17 N -0.480 5.480
18 Si 0.708 3.292
19 H -0.208 1.208
20 H -0.214 1.214
21 H -0.201 1.201
22 C -0.184 4.184
23 H 0.085 0.915
24 H 0.089 0.911
25 H 0.089 0.911
26 H 0.257 0.743
27 H 0.084 0.916
28 H 0.072 0.928
29 H 0.071 0.929
30 H 0.087 0.913
31 H 0.135 0.865
32 H 0.064 0.936
33 H 0.074 0.926
34 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -8.113 4.752 -5.346 10.816
hybrid contribution -0.216 -1.236 0.826 1.502
sum -8.329 3.516 -4.520 10.108
Atomic orbital electron populations
1.20009 0.87251 1.02764 1.02102 1.21360 0.97577 0.87904 1.09453
1.70252 1.01471 1.31835 1.18678 1.27888 0.97136 0.80583 1.01789
1.84784 1.29480 1.23284 1.67873 1.23237 0.80925 0.97424 1.04210
1.20012 0.98972 0.85384 0.98328 0.89609 1.22410 1.01077 0.99790
0.95942 1.22129 0.89717 1.00682 0.95341 1.60914 1.61908 1.04001
1.00303 1.19255 0.84822 0.96642 0.88168 0.93031 1.20973 0.91604
1.39223 1.06021 0.92991 1.24951 0.97184 0.94850 0.95323 1.70118
1.02009 1.42586 1.33271 0.86821 0.78399 0.80080 0.83904 1.20754
1.21355 1.20144 1.22501 1.02979 0.98711 0.94216 0.91462 0.91115
0.91129 0.74253 0.91617 0.92803 0.92851 0.91284 0.86527 0.93552
0.92559 0.92176
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.82 10.07 36.00 0.36 -0.46 16
2 C -0.04 -0.74 7.11 -82.81 -0.59 -1.33 16
3 N -0.49 -8.65 11.29 -11.18 -0.13 -8.78 16
4 C 0.15 2.53 13.23 52.09 0.69 3.22 16
5 O -0.17 -3.32 6.15 5.34 0.03 -3.29 16
6 C 0.00 -0.07 5.44 -35.69 -0.19 -0.26 16
7 C -0.01 -0.14 3.05 -91.65 -0.28 -0.42 16
8 H 0.09 1.23 6.82 -51.93 -0.35 0.88 16
9 C -0.15 -2.48 5.57 -26.65 -0.15 -2.63 16
10 C 0.05 1.01 6.30 -3.83 -0.02 0.99 16
11 N -0.64 -14.91 5.81 -107.99 -0.63 -15.54 16
12 C 0.22 5.32 2.03 -68.88 -0.14 5.18 16
13 H 0.05 1.41 5.67 -51.93 -0.29 1.12 16
14 C -0.54 -14.70 8.70 -34.44 -0.30 -15.00 16
15 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16
16 C 0.08 2.32 5.39 -17.82 -0.10 2.23 16
17 N -0.85 -24.48 12.77 55.43 0.71 -23.77 16
18 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16
19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16
21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
22 C -0.14 -2.90 4.79 -26.66 -0.13 -3.03 16
23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
24 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16
25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
26 H 0.24 2.86 8.06 -52.49 -0.42 2.44 16
27 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16
28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.07 1.45 5.68 -51.93 -0.29 1.16 16
31 H 0.32 7.14 8.79 -39.29 -0.35 6.80 16
32 H 0.25 7.07 8.31 -40.82 -0.34 6.74 16
33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
LS Contribution 273.78 15.07 4.13 4.13
Total: -1.00 -31.00 273.78 -6.34 -37.33
By element:
Atomic # 1 Polarization: 9.81 SS G_CDS: -4.58 Total: 5.23 kcal
Atomic # 6 Polarization: -10.66 SS G_CDS: -0.85 Total: -11.50 kcal
Atomic # 7 Polarization: -48.04 SS G_CDS: -0.05 Total: -48.08 kcal
Atomic # 8 Polarization: -3.32 SS G_CDS: 0.03 Total: -3.29 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal
Total LS contribution 4.13 Total: 4.13 kcal
Total: -31.00 -6.34 -37.33 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259392880.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.209 kcal
(2) G-P(sol) polarization free energy of solvation -30.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.875 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds