Wall clock time and date at job start Mon Mar 30 2020 03:00:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 N 1.34485 * 126.16496 * 2 1
4 4 C 1.30250 * 108.70025 * 180.02562 * 3 2 1
5 5 O 1.33974 * 108.76338 * 359.97438 * 4 3 2
6 6 C 1.34325 * 126.16735 * 180.02562 * 2 1 3
7 7 C 1.50702 * 126.44374 * 359.95864 * 6 2 1
8 8 H 1.08997 * 109.52072 * 359.89509 * 7 6 2
9 9 C 1.53121 * 109.52032 * 120.02124 * 7 6 2
10 10 C 1.53034 * 109.27999 * 62.25396 * 9 7 6
11 11 N 1.46849 * 109.52414 * 59.17527 * 10 9 7
12 12 C 1.46848 * 111.19701 * 298.26153 * 11 10 9
13 13 H 1.08997 * 109.45989 * 301.72415 * 12 11 10
14 14 C 1.50700 * 109.45763 * 181.74848 * 12 11 10
15 15 H 1.08005 * 119.99414 * 239.99755 * 14 12 11
16 16 C 1.37870 * 120.00755 * 59.99955 * 14 12 11
17 17 N 1.31518 * 119.99538 * 359.97438 * 16 14 12
18 18 Si 1.86802 * 120.00728 * 179.97438 * 16 14 12
19 19 H 1.48496 * 109.46958 * 89.99522 * 18 16 14
20 20 H 1.48494 * 109.47221 * 210.00024 * 18 16 14
21 21 H 1.48499 * 109.46628 * 329.99665 * 18 16 14
22 22 C 1.53031 * 109.52444 * 61.74035 * 12 11 10
23 23 H 1.09001 * 109.47394 * 89.97807 * 1 2 3
24 24 H 1.09005 * 109.47558 * 209.97543 * 1 2 3
25 25 H 1.09005 * 109.47337 * 329.97480 * 1 2 3
26 26 H 1.07997 * 125.62207 * 179.97438 * 4 3 2
27 27 H 1.09009 * 109.50138 * 182.19733 * 9 7 6
28 28 H 1.08995 * 109.50420 * 302.26485 * 9 7 6
29 29 H 1.09002 * 109.46283 * 179.19238 * 10 9 7
30 30 H 1.09001 * 109.46046 * 299.16137 * 10 9 7
31 31 H 1.00903 * 110.99673 * 62.35594 * 11 10 9
32 32 H 0.97004 * 119.99837 * 179.97438 * 17 16 14
33 33 H 1.09002 * 109.50179 * 180.87311 * 22 12 11
34 34 H 1.09005 * 109.50267 * 60.76059 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.3006 1.0857 0.0000
4 6 3.5430 0.6948 -0.0006
5 8 3.5734 -0.6446 -0.0003
6 6 2.2997 -1.0844 -0.0005
7 6 1.8493 -2.5225 -0.0003
8 1 0.7601 -2.5631 0.0023
9 6 2.3847 -3.2266 -1.2502
10 6 3.9147 -3.2184 -1.2184
11 7 4.3841 -3.9058 -0.0085
12 6 3.9216 -3.2202 1.2049
13 1 4.2792 -2.1906 1.1990
14 6 4.4597 -3.9317 2.4195
15 1 3.7788 -4.3486 3.1469
16 6 5.8211 -4.0504 2.6023
17 7 6.6501 -3.5431 1.7163
18 14 6.4882 -4.9317 4.1082
19 1 6.6537 -6.3757 3.8038
20 1 7.8029 -4.3502 4.4801
21 1 5.5380 -4.7697 5.2378
22 6 2.3918 -3.2285 1.2454
23 1 -0.3634 0.0004 -1.0277
24 1 -0.3634 -0.8902 0.5135
25 1 -0.3634 0.8898 0.5142
26 1 4.4065 1.3435 -0.0011
27 1 2.0265 -4.2560 -1.2696
28 1 2.0358 -2.7032 -2.1403
29 1 4.2990 -3.7316 -2.0999
30 1 4.2723 -2.1888 -1.2129
31 1 4.0980 -4.8734 -0.0085
32 1 7.6080 -3.6263 1.8450
33 1 2.0486 -2.7060 2.1384
34 1 2.0338 -4.2578 1.2653
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259392880.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:04
Heat of formation + Delta-G solvation = -7.202469 kcal
Electronic energy + Delta-G solvation = -17505.185366 eV
Core-core repulsion = 14824.274743 eV
Total energy + Delta-G solvation = -2680.910624 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-44.26847 -39.55031 -36.05528 -34.91884 -33.49074 -31.67061 -31.22823 -27.94699
-27.03021 -24.74557 -23.17847 -22.54503 -22.39792 -20.47739 -18.51997 -17.63886
-17.61379 -16.62772 -16.11002 -15.77937 -15.18281 -15.16237 -14.86792 -14.11222
-14.06207 -13.93224 -13.84350 -13.24021 -13.04698 -12.80120 -12.69068 -12.41684
-12.38612 -12.02441 -11.82535 -11.46765 -11.41601 -11.31613 -10.80035 -10.46932
-9.45851 -8.47498 -7.92554 -6.14455 0.64205 1.42961 1.44313 1.52909
1.75784 2.04125 2.48324 3.27441 3.37863 3.72838 3.89583 3.99192
4.04809 4.23282 4.31804 4.51023 4.67943 4.72079 4.79533 4.80252
4.84710 4.94040 5.05349 5.06958 5.14512 5.22587 5.39031 5.40968
5.54210 5.70828 5.86231 6.29109 6.73099 6.84288 7.20485 7.25054
7.57976 9.09202
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031694 B = 0.008051 C = 0.007659
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 883.224013 B = 3477.124048 C = 3654.790046
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C -0.043 4.043
3 N -0.511 5.511
4 C 0.150 3.850
5 O -0.199 6.199
6 C -0.032 4.032
7 C -0.002 4.002
8 H 0.121 0.879
9 C -0.141 4.141
10 C 0.053 3.947
11 N -0.666 5.666
12 C 0.221 3.779
13 H 0.018 0.982
14 C -0.556 4.556
15 H 0.047 0.953
16 C 0.036 3.964
17 N -0.878 5.878
18 Si 0.942 3.058
19 H -0.276 1.276
20 H -0.287 1.287
21 H -0.273 1.273
22 C -0.136 4.136
23 H 0.086 0.914
24 H 0.086 0.914
25 H 0.075 0.925
26 H 0.274 0.726
27 H 0.083 0.917
28 H 0.075 0.925
29 H 0.064 0.936
30 H 0.048 0.952
31 H 0.319 0.681
32 H 0.253 0.747
33 H 0.044 0.956
34 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.426 3.503 -5.664 12.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.163 4.163
3 N -0.241 5.241
4 C -0.076 4.076
5 O -0.084 6.084
6 C -0.086 4.086
7 C -0.020 4.020
8 H 0.139 0.861
9 C -0.181 4.181
10 C -0.077 4.077
11 N -0.294 5.294
12 C 0.114 3.886
13 H 0.035 0.965
14 C -0.595 4.595
15 H 0.066 0.934
16 C -0.168 4.168
17 N -0.514 5.514
18 Si 0.769 3.231
19 H -0.202 1.202
20 H -0.213 1.213
21 H -0.197 1.197
22 C -0.176 4.176
23 H 0.105 0.895
24 H 0.105 0.895
25 H 0.094 0.906
26 H 0.289 0.711
27 H 0.102 0.898
28 H 0.094 0.906
29 H 0.083 0.917
30 H 0.067 0.933
31 H 0.136 0.864
32 H 0.062 0.938
33 H 0.063 0.937
34 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -9.748 4.454 -5.717 12.147
hybrid contribution 0.295 -1.070 0.928 1.447
sum -9.453 3.383 -4.789 11.124
Atomic orbital electron populations
1.20181 0.84444 1.03825 1.03687 1.22011 0.99343 0.87245 1.07661
1.70301 1.01952 1.32310 1.19567 1.28759 0.98198 0.80157 1.00442
1.84768 1.30700 1.24528 1.68429 1.23523 0.80698 0.98283 1.06054
1.20043 1.00766 0.84513 0.96701 0.86092 1.22283 0.98102 1.01133
0.96550 1.22080 0.92427 0.99155 0.94035 1.60661 1.63381 1.04191
1.01167 1.18988 0.87499 0.94344 0.87818 0.96468 1.21407 0.91914
1.38959 1.07223 0.93437 1.25651 0.97590 0.95664 0.97897 1.70254
1.01971 1.44066 1.35075 0.85836 0.77552 0.79041 0.80702 1.20166
1.21334 1.19749 1.22284 1.00000 0.99558 0.95709 0.89492 0.89512
0.90638 0.71075 0.89839 0.90612 0.91716 0.93323 0.86406 0.93833
0.93681 0.91367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.46 10.07 71.23 0.72 -0.74 16
2 C -0.04 -1.39 7.11 41.26 0.29 -1.10 16
3 N -0.51 -17.43 11.29 -304.07 -3.43 -20.87 16
4 C 0.15 4.93 13.23 130.48 1.73 6.66 16
5 O -0.20 -7.83 6.15 -3.79 -0.02 -7.86 16
6 C -0.03 -1.14 5.44 24.79 0.13 -1.00 16
7 C 0.00 -0.05 3.05 -11.46 -0.03 -0.09 16
8 H 0.12 2.99 6.82 -2.39 -0.02 2.97 16
9 C -0.14 -4.23 5.57 30.65 0.17 -4.05 16
10 C 0.05 2.03 6.30 86.32 0.54 2.58 16
11 N -0.67 -30.98 5.81 -495.57 -2.88 -33.85 16
12 C 0.22 10.91 2.03 44.19 0.09 11.00 16
13 H 0.02 0.98 5.67 -2.39 -0.01 0.97 16
14 C -0.56 -30.69 8.70 25.60 0.22 -30.47 16
15 H 0.05 2.58 7.74 -2.91 -0.02 2.56 16
16 C 0.04 1.99 5.39 84.65 0.46 2.45 16
17 N -0.88 -51.86 12.77 21.45 0.27 -51.58 16
18 Si 0.94 44.01 29.54 68.60 2.03 46.03 16
19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16
20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16
21 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16
22 C -0.14 -5.34 4.79 30.64 0.15 -5.19 16
23 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
24 H 0.09 1.68 7.16 -2.38 -0.02 1.66 16
25 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16
26 H 0.27 6.33 8.06 -2.91 -0.02 6.31 16
27 H 0.08 2.22 8.14 -2.38 -0.02 2.21 16
28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16
30 H 0.05 2.07 5.68 -2.39 -0.01 2.05 16
31 H 0.32 14.31 8.79 -89.69 -0.79 13.52 16
32 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16
33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
34 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16
Total: -1.00 -67.44 273.78 0.75 -66.68
By element:
Atomic # 1 Polarization: 21.09 SS G_CDS: 0.32 Total: 21.41 kcal
Atomic # 6 Polarization: -24.44 SS G_CDS: 4.47 Total: -19.97 kcal
Atomic # 7 Polarization: -100.27 SS G_CDS: -6.04 Total: -106.30 kcal
Atomic # 8 Polarization: -7.83 SS G_CDS: -0.02 Total: -7.86 kcal
Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal
Total: -67.44 0.75 -66.68 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259392880.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.482 kcal
(2) G-P(sol) polarization free energy of solvation -67.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.954 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.202 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds