Wall clock time and date at job start Mon Mar 30 2020 03:00:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.34476 * 126.16365 * 2 1
4 4 C 1.30258 * 108.69731 * 179.82588 * 3 2 1
5 5 O 1.33965 * 108.76309 * 0.44111 * 4 3 2
6 6 C 1.34330 * 126.16424 * 180.31067 * 2 1 3
7 7 C 1.50697 * 126.44511 * 0.02562 * 6 2 1
8 8 H 1.09003 * 109.52379 * 359.87398 * 7 6 2
9 9 C 1.53120 * 109.52210 * 239.68093 * 7 6 2
10 10 C 1.53037 * 109.27938 * 297.74841 * 9 7 6
11 11 N 1.46842 * 109.52135 * 300.82143 * 10 9 7
12 12 C 1.46844 * 111.20031 * 61.74254 * 11 10 9
13 13 H 1.08992 * 109.46525 * 58.27233 * 12 11 10
14 14 C 1.50707 * 109.46412 * 178.24156 * 12 11 10
15 15 H 1.08003 * 120.00189 * 120.05192 * 14 12 11
16 16 C 1.37879 * 119.99833 * 300.05360 * 14 12 11
17 17 N 1.31514 * 120.00010 * 0.02562 * 16 14 12
18 18 Si 1.86799 * 120.00066 * 179.97438 * 16 14 12
19 19 H 1.48497 * 109.47121 * 89.99813 * 18 16 14
20 20 H 1.48498 * 109.47204 * 210.00214 * 18 16 14
21 21 H 1.48501 * 109.46870 * 329.99799 * 18 16 14
22 22 C 1.53040 * 109.52169 * 298.25509 * 12 11 10
23 23 H 1.09002 * 109.47152 * 269.68832 * 1 2 3
24 24 H 1.09001 * 109.46980 * 149.68933 * 1 2 3
25 25 H 1.09004 * 109.47113 * 29.68913 * 1 2 3
26 26 H 1.07999 * 125.62206 * 180.15141 * 4 3 2
27 27 H 1.09000 * 109.50179 * 57.69135 * 9 7 6
28 28 H 1.09002 * 109.50197 * 177.80185 * 9 7 6
29 29 H 1.08998 * 109.46156 * 180.80414 * 10 9 7
30 30 H 1.08998 * 109.44933 * 60.83170 * 10 9 7
31 31 H 1.00911 * 111.00137 * 297.64028 * 11 10 9
32 32 H 0.97000 * 120.00148 * 180.02562 * 17 16 14
33 33 H 1.08999 * 109.50404 * 299.23863 * 22 12 11
34 34 H 1.09001 * 109.52995 * 179.13987 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0857 0.0000
4 6 3.5431 0.6947 0.0037
5 8 3.5734 -0.6446 -0.0035
6 6 2.2997 -1.0845 -0.0059
7 6 1.8493 -2.5225 -0.0142
8 1 0.7600 -2.5631 -0.0126
9 6 2.3912 -3.2356 1.2277
10 6 3.9210 -3.2272 1.1881
11 7 4.3840 -3.9058 -0.0291
12 6 3.9153 -3.2115 -1.2351
13 1 4.2730 -2.1819 -1.2236
14 6 4.4473 -3.9139 -2.4577
15 1 3.7629 -4.3249 -3.1851
16 6 5.8079 -4.0320 -2.6476
17 7 6.6413 -3.5321 -1.7616
18 14 6.4673 -4.9034 -4.1626
19 1 6.6505 -3.9191 -5.2593
20 1 7.7722 -5.5353 -3.8415
21 1 5.5034 -5.9486 -4.5913
22 6 2.3853 -3.2194 -1.2678
23 1 -0.3633 -0.0056 1.0277
24 1 -0.3633 -0.8872 -0.5187
25 1 -0.3633 0.8928 -0.5090
26 1 4.4066 1.3433 0.0070
27 1 2.0475 -2.7182 2.1234
28 1 2.0330 -4.2651 1.2415
29 1 4.3098 -3.7467 2.0638
30 1 4.2784 -2.1975 1.1882
31 1 4.0980 -4.8735 -0.0347
32 1 7.5985 -3.6149 -1.8953
33 1 2.0272 -4.2486 -1.2933
34 1 2.0370 -2.6908 -2.1551
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259392882.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:05
Heat of formation + Delta-G solvation = 15.896782 kcal
Electronic energy + Delta-G solvation = -17504.227760 eV
Core-core repulsion = 14824.318795 eV
Total energy + Delta-G solvation = -2679.908965 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-42.94918 -37.98425 -34.75140 -33.06355 -31.89073 -30.00475 -29.85184 -26.73191
-25.09443 -23.26577 -21.68300 -21.14128 -20.79334 -19.02266 -16.55732 -16.33762
-16.22882 -14.84600 -14.49909 -14.32874 -13.75337 -13.59701 -13.26709 -13.06880
-12.72353 -12.41768 -12.08512 -11.98413 -11.57255 -11.19383 -10.91735 -10.74429
-10.62613 -10.53055 -10.36498 -10.05581 -9.78898 -9.57094 -8.88216 -8.36183
-8.16009 -6.75996 -5.83748 -3.98386 1.95680 3.03652 3.27401 3.34655
3.41795 3.43961 4.49607 4.52330 5.01025 5.14518 5.26842 5.37303
5.39739 5.57825 5.70747 5.79835 5.87301 5.91487 5.99743 6.13426
6.25692 6.31966 6.44250 6.45881 6.49267 6.71123 6.77178 6.90969
6.96956 7.63319 7.93390 8.13981 8.29374 8.65993 8.97953 9.18243
9.69944 11.20116
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031656 B = 0.008052 C = 0.007663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 884.285488 B = 3476.440525 C = 3653.140517
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C -0.043 4.043
3 N -0.492 5.492
4 C 0.152 3.848
5 O -0.170 6.170
6 C -0.004 4.004
7 C -0.008 4.008
8 H 0.086 0.914
9 C -0.152 4.152
10 C 0.052 3.948
11 N -0.644 5.644
12 C 0.219 3.781
13 H 0.052 0.948
14 C -0.540 4.540
15 H 0.052 0.948
16 C 0.084 3.916
17 N -0.845 5.845
18 Si 0.880 3.120
19 H -0.283 1.283
20 H -0.287 1.287
21 H -0.276 1.276
22 C -0.144 4.144
23 H 0.067 0.933
24 H 0.070 0.930
25 H 0.070 0.930
26 H 0.242 0.758
27 H 0.053 0.947
28 H 0.065 0.935
29 H 0.053 0.947
30 H 0.069 0.931
31 H 0.318 0.682
32 H 0.255 0.745
33 H 0.060 0.940
34 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.788 3.757 5.382 10.969
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.163 4.163
3 N -0.222 5.222
4 C -0.074 4.074
5 O -0.054 6.054
6 C -0.058 4.058
7 C -0.027 4.027
8 H 0.104 0.896
9 C -0.192 4.192
10 C -0.079 4.079
11 N -0.271 5.271
12 C 0.111 3.889
13 H 0.069 0.931
14 C -0.578 4.578
15 H 0.070 0.930
16 C -0.123 4.123
17 N -0.480 5.480
18 Si 0.708 3.292
19 H -0.209 1.209
20 H -0.213 1.213
21 H -0.201 1.201
22 C -0.184 4.184
23 H 0.085 0.915
24 H 0.089 0.911
25 H 0.089 0.911
26 H 0.257 0.743
27 H 0.072 0.928
28 H 0.084 0.916
29 H 0.072 0.928
30 H 0.087 0.913
31 H 0.135 0.865
32 H 0.065 0.935
33 H 0.078 0.922
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -8.085 4.702 5.434 10.816
hybrid contribution -0.221 -1.212 -0.842 1.492
sum -8.306 3.490 4.592 10.112
Atomic orbital electron populations
1.20011 0.87249 1.02768 1.02100 1.21362 0.97578 0.87904 1.09448
1.70253 1.01470 1.31833 1.18675 1.27889 0.97139 0.80581 1.01795
1.84780 1.29488 1.23289 1.67867 1.23237 0.80920 0.97427 1.04210
1.20012 0.98966 0.85369 0.98350 0.89607 1.22410 1.01067 0.99747
0.95996 1.22130 0.89746 1.00717 0.95277 1.60905 1.61965 1.04037
1.00216 1.19250 0.84784 0.96558 0.88283 0.93063 1.20974 0.91610
1.39666 1.05588 0.92990 1.24952 0.97169 0.94859 0.95329 1.70114
1.01898 1.42830 1.33128 0.86823 0.78462 0.80021 0.83889 1.20894
1.21292 1.20081 1.22502 1.03014 0.98776 0.94117 0.91457 0.91117
0.91128 0.74253 0.92802 0.91614 0.92848 0.91269 0.86520 0.93548
0.92173 0.92567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.82 10.07 36.01 0.36 -0.46 16
2 C -0.04 -0.74 7.11 -82.81 -0.59 -1.32 16
3 N -0.49 -8.65 11.29 -11.18 -0.13 -8.78 16
4 C 0.15 2.53 13.23 52.10 0.69 3.22 16
5 O -0.17 -3.32 6.15 5.36 0.03 -3.29 16
6 C 0.00 -0.07 5.44 -35.69 -0.19 -0.26 16
7 C -0.01 -0.14 3.05 -91.65 -0.28 -0.42 16
8 H 0.09 1.23 6.82 -51.93 -0.35 0.88 16
9 C -0.15 -2.48 5.57 -26.65 -0.15 -2.63 16
10 C 0.05 1.01 6.30 -3.84 -0.02 0.99 16
11 N -0.64 -14.91 5.80 -107.99 -0.63 -15.53 16
12 C 0.22 5.33 2.04 -68.87 -0.14 5.19 16
13 H 0.05 1.40 5.68 -51.93 -0.29 1.11 16
14 C -0.54 -14.71 8.71 -34.44 -0.30 -15.01 16
15 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16
16 C 0.08 2.32 5.39 -17.82 -0.10 2.23 16
17 N -0.85 -24.48 12.77 55.43 0.71 -23.77 16
18 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16
19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16
21 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16
22 C -0.14 -2.90 4.79 -26.65 -0.13 -3.03 16
23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
24 H 0.07 0.81 7.16 -51.93 -0.37 0.44 16
25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
26 H 0.24 2.86 8.06 -52.49 -0.42 2.44 16
27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
29 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
30 H 0.07 1.46 5.67 -51.93 -0.29 1.16 16
31 H 0.32 7.14 8.79 -39.29 -0.35 6.80 16
32 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16
33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16
34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
LS Contribution 273.78 15.07 4.13 4.13
Total: -1.00 -31.00 273.78 -6.34 -37.34
By element:
Atomic # 1 Polarization: 9.80 SS G_CDS: -4.58 Total: 5.21 kcal
Atomic # 6 Polarization: -10.66 SS G_CDS: -0.85 Total: -11.51 kcal
Atomic # 7 Polarization: -48.03 SS G_CDS: -0.05 Total: -48.08 kcal
Atomic # 8 Polarization: -3.32 SS G_CDS: 0.03 Total: -3.29 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 4.13 Total: 4.13 kcal
Total: -31.00 -6.34 -37.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259392882.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.239 kcal
(2) G-P(sol) polarization free energy of solvation -31.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.234 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.338 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds