Wall clock time and date at job start Mon Mar 30 2020 03:00:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.34476 * 126.16365 * 2 1
4 4 C 1.30258 * 108.69731 * 179.82588 * 3 2 1
5 5 O 1.33965 * 108.76309 * 0.44111 * 4 3 2
6 6 C 1.34330 * 126.16424 * 180.31067 * 2 1 3
7 7 C 1.50697 * 126.44511 * 0.02562 * 6 2 1
8 8 H 1.09003 * 109.52379 * 359.87398 * 7 6 2
9 9 C 1.53120 * 109.52210 * 239.68093 * 7 6 2
10 10 C 1.53037 * 109.27938 * 297.74841 * 9 7 6
11 11 N 1.46842 * 109.52135 * 300.82143 * 10 9 7
12 12 C 1.46844 * 111.20031 * 61.74254 * 11 10 9
13 13 H 1.08992 * 109.46525 * 58.27233 * 12 11 10
14 14 C 1.50707 * 109.46412 * 178.24156 * 12 11 10
15 15 H 1.08003 * 120.00189 * 120.05192 * 14 12 11
16 16 C 1.37879 * 119.99833 * 300.05360 * 14 12 11
17 17 N 1.31514 * 120.00010 * 0.02562 * 16 14 12
18 18 Si 1.86799 * 120.00066 * 179.97438 * 16 14 12
19 19 H 1.48497 * 109.47121 * 89.99813 * 18 16 14
20 20 H 1.48498 * 109.47204 * 210.00214 * 18 16 14
21 21 H 1.48501 * 109.46870 * 329.99799 * 18 16 14
22 22 C 1.53040 * 109.52169 * 298.25509 * 12 11 10
23 23 H 1.09002 * 109.47152 * 269.68832 * 1 2 3
24 24 H 1.09001 * 109.46980 * 149.68933 * 1 2 3
25 25 H 1.09004 * 109.47113 * 29.68913 * 1 2 3
26 26 H 1.07999 * 125.62206 * 180.15141 * 4 3 2
27 27 H 1.09000 * 109.50179 * 57.69135 * 9 7 6
28 28 H 1.09002 * 109.50197 * 177.80185 * 9 7 6
29 29 H 1.08998 * 109.46156 * 180.80414 * 10 9 7
30 30 H 1.08998 * 109.44933 * 60.83170 * 10 9 7
31 31 H 1.00911 * 111.00137 * 297.64028 * 11 10 9
32 32 H 0.97000 * 120.00148 * 180.02562 * 17 16 14
33 33 H 1.08999 * 109.50404 * 299.23863 * 22 12 11
34 34 H 1.09001 * 109.52995 * 179.13987 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0857 0.0000
4 6 3.5431 0.6947 0.0037
5 8 3.5734 -0.6446 -0.0035
6 6 2.2997 -1.0845 -0.0059
7 6 1.8493 -2.5225 -0.0142
8 1 0.7600 -2.5631 -0.0126
9 6 2.3912 -3.2356 1.2277
10 6 3.9210 -3.2272 1.1881
11 7 4.3840 -3.9058 -0.0291
12 6 3.9153 -3.2115 -1.2351
13 1 4.2730 -2.1819 -1.2236
14 6 4.4473 -3.9139 -2.4577
15 1 3.7629 -4.3249 -3.1851
16 6 5.8079 -4.0320 -2.6476
17 7 6.6413 -3.5321 -1.7616
18 14 6.4673 -4.9034 -4.1626
19 1 6.6505 -3.9191 -5.2593
20 1 7.7722 -5.5353 -3.8415
21 1 5.5034 -5.9486 -4.5913
22 6 2.3853 -3.2194 -1.2678
23 1 -0.3633 -0.0056 1.0277
24 1 -0.3633 -0.8872 -0.5187
25 1 -0.3633 0.8928 -0.5090
26 1 4.4066 1.3433 0.0070
27 1 2.0475 -2.7182 2.1234
28 1 2.0330 -4.2651 1.2415
29 1 4.3098 -3.7467 2.0638
30 1 4.2784 -2.1975 1.1882
31 1 4.0980 -4.8735 -0.0347
32 1 7.5985 -3.6149 -1.8953
33 1 2.0272 -4.2486 -1.2933
34 1 2.0370 -2.6908 -2.1551
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259392882.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:05
Heat of formation + Delta-G solvation = -7.185562 kcal
Electronic energy + Delta-G solvation = -17505.228686 eV
Core-core repulsion = 14824.318795 eV
Total energy + Delta-G solvation = -2680.909890 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-44.26913 -39.55008 -36.05574 -34.91911 -33.49039 -31.67043 -31.22754 -27.94721
-27.03068 -24.74515 -23.17779 -22.54549 -22.39846 -20.47783 -18.52112 -17.64107
-17.61185 -16.62829 -16.10942 -15.77920 -15.18465 -15.16115 -14.86764 -14.11356
-14.06228 -13.93108 -13.84341 -13.24183 -13.04958 -12.80665 -12.69215 -12.41746
-12.36933 -12.02717 -11.82477 -11.46568 -11.41919 -11.31644 -10.80826 -10.46583
-9.45823 -8.47412 -7.92579 -6.14459 0.64153 1.42618 1.44289 1.52989
1.75775 2.04064 2.48247 3.27478 3.37861 3.72857 3.89604 3.99153
4.04850 4.23296 4.31863 4.51090 4.67983 4.72093 4.79517 4.80334
4.84702 4.94049 5.05397 5.06929 5.14507 5.22556 5.39094 5.41084
5.54230 5.70725 5.86186 6.29039 6.73106 6.84281 7.20556 7.25082
7.57932 9.09167
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031656 B = 0.008052 C = 0.007663
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 884.285488 B = 3476.440525 C = 3653.140517
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C -0.043 4.043
3 N -0.511 5.511
4 C 0.150 3.850
5 O -0.199 6.199
6 C -0.032 4.032
7 C -0.002 4.002
8 H 0.121 0.879
9 C -0.141 4.141
10 C 0.053 3.947
11 N -0.666 5.666
12 C 0.222 3.778
13 H 0.017 0.983
14 C -0.556 4.556
15 H 0.048 0.952
16 C 0.036 3.964
17 N -0.878 5.878
18 Si 0.942 3.058
19 H -0.281 1.281
20 H -0.286 1.286
21 H -0.269 1.269
22 C -0.136 4.136
23 H 0.087 0.913
24 H 0.086 0.914
25 H 0.075 0.925
26 H 0.274 0.726
27 H 0.075 0.925
28 H 0.083 0.917
29 H 0.064 0.936
30 H 0.049 0.951
31 H 0.319 0.681
32 H 0.253 0.747
33 H 0.068 0.932
34 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.407 3.463 5.750 12.384
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.163 4.163
3 N -0.241 5.241
4 C -0.076 4.076
5 O -0.084 6.084
6 C -0.086 4.086
7 C -0.020 4.020
8 H 0.139 0.861
9 C -0.181 4.181
10 C -0.077 4.077
11 N -0.294 5.294
12 C 0.114 3.886
13 H 0.035 0.965
14 C -0.595 4.595
15 H 0.066 0.934
16 C -0.168 4.168
17 N -0.514 5.514
18 Si 0.769 3.231
19 H -0.207 1.207
20 H -0.212 1.212
21 H -0.194 1.194
22 C -0.176 4.176
23 H 0.105 0.895
24 H 0.105 0.895
25 H 0.094 0.906
26 H 0.289 0.711
27 H 0.094 0.906
28 H 0.102 0.898
29 H 0.083 0.917
30 H 0.067 0.933
31 H 0.136 0.864
32 H 0.062 0.938
33 H 0.086 0.914
34 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -9.729 4.405 5.802 12.154
hybrid contribution 0.293 -1.045 -0.943 1.438
sum -9.436 3.360 4.858 11.132
Atomic orbital electron populations
1.20183 0.84444 1.03819 1.03693 1.22012 0.99344 0.87245 1.07657
1.70302 1.01954 1.32312 1.19568 1.28760 0.98198 0.80157 1.00445
1.84765 1.30706 1.24530 1.68420 1.23523 0.80694 0.98286 1.06053
1.20043 1.00769 0.84516 0.96695 0.86092 1.22283 0.98090 1.01076
0.96620 1.22081 0.92463 0.99212 0.93947 1.60652 1.63426 1.04213
1.01107 1.18984 0.87469 0.94271 0.87912 0.96513 1.21410 0.91910
1.39388 1.06809 0.93422 1.25652 0.97564 0.95654 0.97937 1.70250
1.01863 1.44295 1.34943 0.85838 0.77770 0.78980 0.80540 1.20744
1.21153 1.19372 1.22286 1.00018 0.99594 0.95656 0.89477 0.89520
0.90644 0.71073 0.90612 0.89841 0.91710 0.93302 0.86395 0.93828
0.91381 0.93665
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.46 10.07 71.24 0.72 -0.74 16
2 C -0.04 -1.39 7.11 41.26 0.29 -1.10 16
3 N -0.51 -17.44 11.29 -304.07 -3.43 -20.88 16
4 C 0.15 4.93 13.23 130.48 1.73 6.66 16
5 O -0.20 -7.83 6.15 -3.74 -0.02 -7.85 16
6 C -0.03 -1.14 5.44 24.79 0.13 -1.00 16
7 C 0.00 -0.05 3.05 -11.46 -0.03 -0.09 16
8 H 0.12 2.99 6.82 -2.39 -0.02 2.97 16
9 C -0.14 -4.23 5.57 30.65 0.17 -4.05 16
10 C 0.05 2.03 6.30 86.33 0.54 2.58 16
11 N -0.67 -30.97 5.80 -495.58 -2.88 -33.85 16
12 C 0.22 10.91 2.04 44.20 0.09 11.00 16
13 H 0.02 0.96 5.68 -2.39 -0.01 0.95 16
14 C -0.56 -30.70 8.71 25.60 0.22 -30.47 16
15 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16
16 C 0.04 1.99 5.39 84.66 0.46 2.45 16
17 N -0.88 -51.86 12.77 21.45 0.27 -51.58 16
18 Si 0.94 44.02 29.54 68.60 2.03 46.05 16
19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16
20 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16
21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16
22 C -0.14 -5.34 4.79 30.65 0.15 -5.19 16
23 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16
24 H 0.09 1.68 7.16 -2.39 -0.02 1.66 16
25 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16
26 H 0.27 6.33 8.06 -2.91 -0.02 6.31 16
27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16
30 H 0.05 2.07 5.67 -2.39 -0.01 2.06 16
31 H 0.32 14.31 8.79 -89.69 -0.79 13.52 16
32 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16
33 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16
34 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
Total: -1.00 -67.45 273.78 0.75 -66.69
By element:
Atomic # 1 Polarization: 21.07 SS G_CDS: 0.32 Total: 21.39 kcal
Atomic # 6 Polarization: -24.44 SS G_CDS: 4.47 Total: -19.97 kcal
Atomic # 7 Polarization: -100.27 SS G_CDS: -6.04 Total: -106.30 kcal
Atomic # 8 Polarization: -7.83 SS G_CDS: -0.02 Total: -7.85 kcal
Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal
Total: -67.45 0.75 -66.69 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259392882.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.509 kcal
(2) G-P(sol) polarization free energy of solvation -67.448 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.940 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.694 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.186 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds