Wall clock time and date at job start Mon Mar 30 2020 03:13:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3
5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3
6 6 N 1.31787 * 119.09601 * 359.97438 * 5 2 1
7 7 C 1.32486 * 120.96701 * 179.97438 * 6 5 2
8 8 C 1.38231 * 119.17530 * 0.02562 * 7 6 5
9 9 C 1.50709 * 120.82252 * 179.97438 * 8 7 6
10 10 C 1.50699 * 109.46818 * 264.99847 * 9 8 7
11 11 H 1.07995 * 120.00588 * 0.02562 * 10 9 8
12 12 C 1.37880 * 119.99728 * 179.97438 * 10 9 8
13 13 N 1.31519 * 120.00027 * 0.02562 * 12 10 9
14 14 Si 1.86801 * 119.99859 * 180.02562 * 12 10 9
15 15 H 1.48493 * 109.47025 * 60.00519 * 14 12 10
16 16 H 1.48500 * 109.46874 * 180.02562 * 14 12 10
17 17 H 1.48503 * 109.47268 * 300.00343 * 14 12 10
18 18 C 1.39372 * 118.35109 * 359.97438 * 8 7 6
19 19 O 1.35525 * 120.50907 * 180.02562 * 18 8 7
20 20 N 1.31771 * 119.09514 * 179.73359 * 5 2 1
21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1
25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1
26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1
27 27 H 1.08993 * 109.46955 * 60.00011 * 4 2 1
28 28 H 1.09000 * 109.47050 * 179.97438 * 4 2 1
29 29 H 1.09001 * 109.47002 * 299.99574 * 4 2 1
30 30 H 1.08004 * 120.41380 * 180.02562 * 7 6 5
31 31 H 1.08995 * 109.47162 * 24.99912 * 9 8 7
32 32 H 1.08999 * 109.46585 * 145.00084 * 9 8 7
33 33 H 0.96996 * 119.99892 * 179.97438 * 13 12 10
34 34 H 0.96698 * 113.99859 * 90.00554 * 19 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7214 1.2492
5 6 2.0323 -0.7104 -1.2305
6 7 1.1602 -1.2049 -2.0859
7 6 1.5608 -1.8359 -3.1798
8 6 2.9150 -1.9741 -3.4202
9 6 3.4118 -2.6855 -4.6525
10 6 3.6949 -4.1278 -4.3199
11 1 3.5311 -4.4930 -3.3168
12 6 4.1621 -4.9816 -5.2966
13 7 4.3611 -4.5371 -6.5183
14 14 4.5123 -6.7696 -4.8845
15 1 3.2666 -7.4203 -4.4053
16 1 5.0020 -7.4706 -6.0987
17 1 5.5475 -6.8392 -3.8220
18 6 3.8095 -1.4392 -2.4949
19 8 5.1465 -1.5492 -2.6875
20 7 3.3314 -0.8159 -1.4239
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3633 0.5138 0.8900
23 1 -0.3634 -1.0277 -0.0005
24 1 1.6768 1.9562 0.8900
25 1 3.1300 1.4424 0.0005
26 1 1.6767 1.9563 -0.8900
27 1 1.6767 -1.7489 1.2492
28 1 3.1300 -0.7217 1.2490
29 1 1.6767 -0.2075 2.1393
30 1 0.8383 -2.2373 -3.8750
31 1 2.6521 -2.6348 -5.4324
32 1 4.3261 -2.2075 -5.0041
33 1 4.6901 -5.1376 -7.2052
34 1 5.5338 -0.8160 -3.1849
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259582291.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:08
Heat of formation + Delta-G solvation = -15.198908 kcal
Electronic energy + Delta-G solvation = -16673.041713 eV
Core-core repulsion = 13991.784337 eV
Total energy + Delta-G solvation = -2681.257375 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.77088 -37.53857 -36.03830 -33.67424 -32.53398 -31.27111 -27.37756 -27.18155
-27.09401 -24.20223 -23.44454 -21.63651 -19.79327 -17.96119 -17.19141 -16.48042
-15.67838 -14.80295 -14.74795 -14.15191 -13.84845 -13.56382 -13.23716 -13.05073
-12.36823 -12.11706 -12.02295 -11.55942 -11.52668 -11.47853 -11.38806 -10.99579
-10.83519 -10.77605 -10.69863 -10.36628 -9.96836 -9.68984 -9.46967 -8.72208
-8.45442 -8.25948 -6.11821 -4.15353 1.49732 1.58636 3.29668 3.33248
3.37519 3.84779 4.16984 4.35269 4.41730 4.87328 5.11381 5.18926
5.22183 5.23986 5.58330 5.69403 5.70221 5.74566 5.90268 5.92754
5.96215 6.01679 6.18781 6.27244 6.34931 6.39595 6.54793 6.87395
7.35080 7.45781 7.54726 7.82535 7.97859 8.19090 8.61872 8.86627
9.48552 10.98200
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.038845 B = 0.006070 C = 0.005986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 720.637168 B = 4612.067022 C = 4676.646788
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.006 3.994
3 C -0.133 4.133
4 C -0.135 4.135
5 C 0.312 3.688
6 N -0.521 5.521
7 C 0.141 3.859
8 C -0.151 4.151
9 C 0.065 3.935
10 C -0.509 4.509
11 H 0.053 0.947
12 C 0.062 3.938
13 N -0.894 5.894
14 Si 0.897 3.103
15 H -0.276 1.276
16 H -0.285 1.285
17 H -0.276 1.276
18 C 0.345 3.655
19 O -0.462 6.462
20 N -0.537 5.537
21 H 0.060 0.940
22 H 0.052 0.948
23 H 0.061 0.939
24 H 0.060 0.940
25 H 0.065 0.935
26 H 0.052 0.948
27 H 0.053 0.947
28 H 0.065 0.935
29 H 0.060 0.940
30 H 0.167 0.833
31 H 0.034 0.966
32 H 0.035 0.965
33 H 0.264 0.736
34 H 0.395 0.605
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.737 9.871 9.620 14.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.004 3.996
3 C -0.191 4.191
4 C -0.193 4.193
5 C 0.043 3.957
6 N -0.235 5.235
7 C -0.022 4.022
8 C -0.156 4.156
9 C 0.027 3.973
10 C -0.547 4.547
11 H 0.072 0.928
12 C -0.140 4.140
13 N -0.532 5.532
14 Si 0.724 3.276
15 H -0.201 1.201
16 H -0.211 1.211
17 H -0.201 1.201
18 C 0.158 3.842
19 O -0.268 6.268
20 N -0.261 5.261
21 H 0.079 0.921
22 H 0.071 0.929
23 H 0.080 0.920
24 H 0.079 0.921
25 H 0.084 0.916
26 H 0.071 0.929
27 H 0.072 0.928
28 H 0.084 0.916
29 H 0.079 0.921
30 H 0.184 0.816
31 H 0.052 0.948
32 H 0.053 0.947
33 H 0.073 0.927
34 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges -4.984 9.727 10.485 15.146
hybrid contribution 0.813 -1.194 -0.971 1.741
sum -4.171 8.533 9.513 13.443
Atomic orbital electron populations
1.21678 0.92741 1.02616 1.01246 1.19249 0.96084 0.94553 0.89734
1.21812 1.01982 0.93832 1.01514 1.21826 1.02073 0.99923 0.95478
1.22466 0.83764 0.94316 0.95111 1.68104 1.39969 1.11511 1.03962
1.23070 0.94051 0.92188 0.92940 1.22589 0.94484 0.98105 1.00433
1.18142 0.97033 0.94411 0.87713 1.20880 1.44619 0.93080 0.96152
0.92848 1.24952 0.95215 0.98923 0.94892 1.69926 1.45575 1.35924
1.01810 0.86567 0.78851 0.84350 0.77788 1.20149 1.21095 1.20105
1.19304 0.85117 0.91368 0.88399 1.84805 1.16356 1.48138 1.77459
1.67500 1.17213 1.18846 1.22553 0.92052 0.92860 0.92019 0.92088
0.91629 0.92911 0.92827 0.91583 0.92069 0.81560 0.94831 0.94721
0.92662 0.74731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.53 7.67 37.16 0.28 -1.25 16
2 C 0.01 0.08 0.92 -155.66 -0.14 -0.06 16
3 C -0.13 -1.59 8.36 37.15 0.31 -1.28 16
4 C -0.13 -1.73 8.37 37.16 0.31 -1.42 16
5 C 0.31 5.54 6.25 -157.22 -0.98 4.56 16
6 N -0.52 -9.61 9.01 -10.79 -0.10 -9.70 16
7 C 0.14 2.73 10.98 -17.27 -0.19 2.54 16
8 C -0.15 -3.23 5.12 -104.20 -0.53 -3.76 16
9 C 0.06 1.60 4.90 -29.03 -0.14 1.46 16
10 C -0.51 -14.10 9.09 -34.44 -0.31 -14.41 16
11 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16
12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
13 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16
14 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16
15 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16
17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
18 C 0.35 7.10 7.81 -16.70 -0.13 6.97 16
19 O -0.46 -9.02 12.84 -18.27 -0.23 -9.26 16
20 N -0.54 -10.31 9.83 -10.78 -0.11 -10.42 16
21 H 0.06 0.78 8.04 -51.93 -0.42 0.36 16
22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
23 H 0.06 0.81 8.04 -51.93 -0.42 0.39 16
24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
25 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16
26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
28 H 0.07 0.91 8.02 -51.93 -0.42 0.50 16
29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
30 H 0.17 2.89 8.06 -52.48 -0.42 2.47 16
31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16
32 H 0.03 0.88 7.78 -51.93 -0.40 0.48 16
33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
34 H 0.40 5.54 9.06 45.56 0.41 5.96 16
LS Contribution 292.59 15.07 4.41 4.41
Total: -1.00 -31.09 292.59 -6.09 -37.18
By element:
Atomic # 1 Polarization: 5.41 SS G_CDS: -4.16 Total: 1.26 kcal
Atomic # 6 Polarization: -3.39 SS G_CDS: -1.63 Total: -5.02 kcal
Atomic # 7 Polarization: -45.64 SS G_CDS: 0.53 Total: -45.11 kcal
Atomic # 8 Polarization: -9.02 SS G_CDS: -0.23 Total: -9.26 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -31.09 -6.09 -37.18 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259582291.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.981 kcal
(2) G-P(sol) polarization free energy of solvation -31.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.106 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.093 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.180 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.199 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds