Wall clock time and date at job start Mon Mar 30 2020 03:02:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 N 1.30253 * 125.61839 * 2 1
4 4 C 1.34478 * 108.70095 * 179.97438 * 3 2 1
5 5 C 1.50693 * 126.16492 * 179.97438 * 4 3 2
6 6 H 1.09004 * 109.46159 * 185.04856 * 5 4 3
7 7 C 1.53038 * 109.46414 * 305.02467 * 5 4 3
8 8 C 1.53127 * 109.27941 * 179.18502 * 7 5 4
9 9 H 1.08997 * 109.52581 * 182.44219 * 8 7 5
10 10 C 1.50699 * 109.52137 * 62.25129 * 8 7 5
11 11 H 1.08003 * 120.00188 * 0.31343 * 10 8 7
12 12 C 1.37877 * 120.00191 * 180.31909 * 10 8 7
13 13 N 1.31527 * 119.99571 * 359.97438 * 12 10 8
14 14 Si 1.86791 * 120.00413 * 180.02562 * 12 10 8
15 15 H 1.48497 * 109.47653 * 89.99720 * 14 12 10
16 16 H 1.48504 * 109.47345 * 210.00087 * 14 12 10
17 17 H 1.48502 * 109.47060 * 329.99617 * 14 12 10
18 18 C 1.53117 * 109.15989 * 302.34585 * 8 7 5
19 19 C 1.53044 * 109.27792 * 57.65607 * 18 8 7
20 20 N 1.46830 * 109.45935 * 65.06984 * 5 4 3
21 21 C 1.34335 * 107.66788 * 0.26117 * 4 3 2
22 22 O 1.33961 * 125.61799 * 179.97438 * 2 1 3
23 23 H 1.08997 * 109.46968 * 90.00330 * 1 2 3
24 24 H 1.08997 * 109.46612 * 210.00255 * 1 2 3
25 25 H 1.08997 * 109.47202 * 330.00216 * 1 2 3
26 26 H 1.08997 * 109.50308 * 59.24715 * 7 5 4
27 27 H 1.09000 * 109.50697 * 299.12441 * 7 5 4
28 28 H 0.96996 * 119.99627 * 179.97438 * 13 12 10
29 29 H 1.09001 * 109.50874 * 297.71787 * 18 8 7
30 30 H 1.09000 * 109.50461 * 177.59307 * 18 8 7
31 31 H 1.09002 * 109.46396 * 60.83566 * 19 18 8
32 32 H 1.08994 * 109.46485 * 180.81491 * 19 18 8
33 33 H 1.00904 * 110.98205 * 54.14293 * 20 5 4
34 34 H 1.07998 * 126.44090 * 179.73196 * 21 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5522 0.6675 0.0006
5 6 4.7570 1.5727 0.0002
6 1 5.6623 0.9723 -0.0896
7 6 4.6676 2.5403 -1.1821
8 6 5.8833 3.4712 -1.1666
9 1 5.8018 4.1903 -1.9817
10 6 7.1416 2.6590 -1.3337
11 1 7.0813 1.5865 -1.4455
12 6 8.3700 3.2851 -1.3439
13 7 8.4435 4.5912 -1.2082
14 14 9.9297 2.2785 -1.5517
15 1 10.2550 2.1620 -2.9959
16 1 11.0499 2.9496 -0.8446
17 1 9.7243 0.9235 -0.9797
18 6 5.9288 4.2162 0.1703
19 6 5.9818 3.1999 1.3135
20 7 4.7973 2.3339 1.2551
21 6 3.5698 -0.6757 -0.0049
22 8 2.2872 -1.0890 0.0005
23 1 -0.3633 -0.0001 -1.0276
24 1 -0.3632 -0.8900 0.5139
25 1 -0.3633 0.8900 0.5138
26 1 3.7555 3.1315 -1.1003
27 1 4.6535 1.9756 -2.1143
28 1 9.3077 5.0316 -1.2149
29 1 5.0365 4.8337 0.2735
30 1 6.8158 4.8487 0.2044
31 1 6.8813 2.5919 1.2175
32 1 5.9997 3.7269 2.2674
33 1 4.7604 1.7174 2.0531
34 1 4.4470 -1.3057 -0.0101
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259643122.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:58
Heat of formation + Delta-G solvation = 14.236674 kcal
Electronic energy + Delta-G solvation = -16979.845089 eV
Core-core repulsion = 14299.864136 eV
Total energy + Delta-G solvation = -2679.980953 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-43.04298 -37.88030 -34.56875 -33.06396 -32.07470 -30.49061 -29.54446 -27.18236
-25.16682 -23.10058 -21.90214 -21.22261 -20.35981 -18.47071 -16.94046 -16.47025
-15.73683 -15.53421 -14.61561 -14.30944 -13.94069 -13.42180 -13.20298 -13.11805
-12.76638 -12.41423 -12.27704 -12.06940 -11.37302 -11.13745 -10.94380 -10.69939
-10.55686 -10.28982 -10.13402 -9.77668 -9.27932 -9.02683 -8.78099 -8.49142
-8.26860 -7.52094 -5.97136 -4.02818 1.69862 2.97272 2.98897 3.28246
3.35727 3.36997 4.23410 4.42800 4.88432 5.11067 5.28079 5.32161
5.34041 5.51089 5.60404 5.93696 6.07223 6.15492 6.23831 6.36783
6.52799 6.55700 6.74767 6.81046 7.04480 7.12612 7.30685 7.56327
7.67695 7.76624 7.96268 8.07363 8.22105 8.25422 8.48715 9.00009
9.60620 11.08348
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.038594 B = 0.006654 C = 0.006194
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 725.326895 B = 4206.785325 C = 4519.201966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 C 0.168 3.832
3 N -0.453 5.453
4 C 0.013 3.987
5 C 0.177 3.823
6 H 0.059 0.941
7 C -0.090 4.090
8 C 0.043 3.957
9 H 0.027 0.973
10 C -0.508 4.508
11 H 0.052 0.948
12 C 0.063 3.937
13 N -0.888 5.888
14 Si 0.885 3.115
15 H -0.281 1.281
16 H -0.287 1.287
17 H -0.277 1.277
18 C -0.106 4.106
19 C 0.074 3.926
20 N -0.678 5.678
21 C -0.090 4.090
22 O -0.211 6.211
23 H 0.088 0.912
24 H 0.082 0.918
25 H 0.098 0.902
26 H 0.051 0.949
27 H 0.044 0.956
28 H 0.259 0.741
29 H 0.024 0.976
30 H 0.093 0.907
31 H 0.038 0.962
32 H 0.048 0.952
33 H 0.321 0.679
34 H 0.211 0.789
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.646 -8.870 3.776 14.362
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.039 4.039
3 N -0.183 5.183
4 C -0.107 4.107
5 C 0.067 3.933
6 H 0.077 0.923
7 C -0.128 4.128
8 C 0.024 3.976
9 H 0.045 0.955
10 C -0.546 4.546
11 H 0.070 0.930
12 C -0.138 4.138
13 N -0.527 5.527
14 Si 0.713 3.287
15 H -0.207 1.207
16 H -0.213 1.213
17 H -0.202 1.202
18 C -0.144 4.144
19 C -0.054 4.054
20 N -0.308 5.308
21 C -0.161 4.161
22 O -0.098 6.098
23 H 0.107 0.893
24 H 0.101 0.899
25 H 0.117 0.883
26 H 0.070 0.930
27 H 0.063 0.937
28 H 0.069 0.931
29 H 0.043 0.957
30 H 0.111 0.889
31 H 0.057 0.943
32 H 0.066 0.934
33 H 0.137 0.863
34 H 0.228 0.772
Dipole moment (debyes) X Y Z Total
from point charges -11.160 -7.633 3.543 13.977
hybrid contribution 2.075 -1.967 0.041 2.860
sum -9.085 -9.600 3.584 13.694
Atomic orbital electron populations
1.20156 0.81815 1.04650 1.04277 1.26372 0.96523 0.79053 1.01922
1.70397 1.01841 1.29508 1.16597 1.22140 0.93521 0.92251 1.02796
1.19759 0.89085 0.92059 0.92398 0.92303 1.21538 0.99923 0.97214
0.94094 1.18743 0.91283 0.93586 0.93980 0.95469 1.21171 0.90957
0.93304 1.49201 0.93019 1.24941 0.98755 0.94792 0.95351 1.69873
1.24525 1.07904 1.50395 0.86717 0.83510 0.80270 0.78205 1.20747
1.21274 1.20175 1.21562 1.00671 0.97126 0.95047 1.21844 0.89923
0.95248 0.98412 1.60349 1.43573 1.24506 1.02416 1.24787 0.84646
0.96440 1.10206 1.84375 1.17009 1.37875 1.70550 0.89340 0.89876
0.88322 0.93003 0.93707 0.93071 0.95703 0.88860 0.94330 0.93388
0.86293 0.77203
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.47 10.51 36.01 0.38 -0.09 16
2 C 0.17 2.46 8.34 -12.94 -0.11 2.36 16
3 N -0.45 -8.21 11.28 -7.36 -0.08 -8.29 16
4 C 0.01 0.24 5.86 -82.81 -0.49 -0.24 16
5 C 0.18 3.57 2.70 -68.89 -0.19 3.39 16
6 H 0.06 1.23 6.75 -51.93 -0.35 0.88 16
7 C -0.09 -2.02 4.81 -26.65 -0.13 -2.14 16
8 C 0.04 1.08 2.61 -91.65 -0.24 0.84 16
9 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16
10 C -0.51 -13.55 6.74 -34.44 -0.23 -13.78 16
11 H 0.05 1.36 6.88 -52.48 -0.36 1.00 16
12 C 0.06 1.70 5.30 -17.81 -0.09 1.60 16
13 N -0.89 -25.02 11.31 55.43 0.63 -24.40 16
14 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16
15 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16
16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
18 C -0.11 -2.57 5.41 -26.65 -0.14 -2.71 16
19 C 0.07 1.59 6.34 -3.83 -0.02 1.57 16
20 N -0.68 -13.52 6.49 -108.00 -0.70 -14.22 16
21 C -0.09 -1.38 12.06 29.35 0.35 -1.03 16
22 O -0.21 -3.14 10.78 5.37 0.06 -3.08 16
23 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
24 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
25 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16
26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16
27 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16
28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.09 2.48 6.02 -51.93 -0.31 2.17 16
31 H 0.04 0.89 7.31 -51.93 -0.38 0.51 16
32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
33 H 0.32 5.70 8.78 -39.29 -0.34 5.36 16
34 H 0.21 2.51 8.06 -52.49 -0.42 2.09 16
LS Contribution 278.64 15.07 4.20 4.20
Total: -1.00 -30.45 278.64 -6.52 -36.97
By element:
Atomic # 1 Polarization: 7.83 SS G_CDS: -4.69 Total: 3.14 kcal
Atomic # 6 Polarization: -9.33 SS G_CDS: -0.91 Total: -10.24 kcal
Atomic # 7 Polarization: -46.75 SS G_CDS: -0.16 Total: -46.91 kcal
Atomic # 8 Polarization: -3.14 SS G_CDS: 0.06 Total: -3.08 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -30.45 -6.52 -36.97 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259643122.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.202 kcal
(2) G-P(sol) polarization free energy of solvation -30.447 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.755 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds