Wall clock time and date at job start Mon Mar 30 2020 03:00:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.34481 * 126.16625 * 2 1
4 4 C 1.30259 * 108.69975 * 179.97438 * 3 2 1
5 5 O 1.33969 * 108.76220 * 359.97438 * 4 3 2
6 6 C 1.34332 * 126.16344 * 179.97438 * 2 1 3
7 7 C 1.50693 * 126.44422 * 359.73854 * 6 2 1
8 8 N 1.46904 * 109.47342 * 262.92496 * 7 6 2
9 9 C 1.47901 * 110.99746 * 64.09936 * 8 7 6
10 10 C 1.53991 * 107.05685 * 214.15727 * 9 8 7
11 11 C 1.54591 * 105.14205 * 1.22605 * 10 9 8
12 12 C 1.48533 * 110.99854 * 306.70556 * 8 7 6
13 13 H 1.08995 * 110.66873 * 41.28463 * 12 8 7
14 14 C 1.50696 * 110.66689 * 278.15530 * 12 8 7
15 15 H 1.07999 * 120.00755 * 359.97438 * 14 12 8
16 16 C 1.37880 * 120.00054 * 180.02562 * 14 12 8
17 17 N 1.31517 * 119.99987 * 359.97438 * 16 14 12
18 18 Si 1.86803 * 120.00282 * 179.97438 * 16 14 12
19 19 H 1.48501 * 109.46876 * 0.02562 * 18 16 14
20 20 H 1.48501 * 109.46823 * 119.99914 * 18 16 14
21 21 H 1.48497 * 109.47462 * 240.00148 * 18 16 14
22 22 H 1.08995 * 109.47723 * 275.81697 * 1 2 3
23 23 H 1.09004 * 109.47189 * 35.82342 * 1 2 3
24 24 H 1.09005 * 109.46973 * 155.82105 * 1 2 3
25 25 H 1.07995 * 125.61384 * 180.02562 * 4 3 2
26 26 H 1.08994 * 109.47304 * 22.93113 * 7 6 2
27 27 H 1.09005 * 109.47104 * 142.93089 * 7 6 2
28 28 H 1.08996 * 109.91918 * 333.51077 * 9 8 7
29 29 H 1.09006 * 109.91354 * 94.80572 * 9 8 7
30 30 H 1.08996 * 110.31113 * 120.14709 * 10 9 8
31 31 H 1.09003 * 110.30504 * 242.21500 * 10 9 8
32 32 H 1.09000 * 110.72838 * 140.31372 * 11 10 9
33 33 H 1.09002 * 110.72580 * 263.60082 * 11 10 9
34 34 H 0.96999 * 120.00019 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0857 0.0000
4 6 3.5431 0.6947 0.0006
5 8 3.5734 -0.6446 0.0015
6 6 2.2996 -1.0845 0.0005
7 6 1.8492 -2.5225 0.0067
8 7 1.8707 -3.0366 1.3827
9 6 0.8970 -2.3172 2.2324
10 6 1.5079 -2.2281 3.6431
11 6 2.8907 -2.9096 3.5282
12 6 3.1978 -2.8166 2.0124
13 1 3.5855 -1.8302 1.7582
14 6 4.1676 -3.8935 1.5991
15 1 3.8490 -4.6798 0.9308
16 6 5.4615 -3.8756 2.0750
17 7 5.8496 -2.9185 2.8892
18 14 6.6635 -5.2109 1.5633
19 1 5.9851 -6.1632 0.6477
20 1 7.8210 -4.5944 0.8665
21 1 7.1401 -5.9362 2.7682
22 1 -0.3634 0.1041 1.0223
23 1 -0.3634 0.8333 -0.6015
24 1 -0.3633 -0.9376 -0.4209
25 1 4.4065 1.3434 0.0011
26 1 0.8360 -2.5876 -0.3898
27 1 2.5208 -3.1163 -0.6134
28 1 0.7279 -1.3156 1.8371
29 1 -0.0426 -2.8685 2.2687
30 1 1.6233 -1.1858 3.9404
31 1 0.8817 -2.7584 4.3607
32 1 3.6378 -2.3665 4.1070
33 1 2.8357 -3.9503 3.8474
34 1 6.7598 -2.9061 3.2243
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259643886.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:45
Heat of formation + Delta-G solvation = 26.336672 kcal
Electronic energy + Delta-G solvation = -17593.829950 eV
Core-core repulsion = 14914.373693 eV
Total energy + Delta-G solvation = -2679.456257 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-42.88285 -38.05106 -34.71536 -32.97490 -32.25689 -30.26454 -28.20403 -27.25450
-24.79191 -24.15190 -21.80031 -20.74112 -19.81114 -19.23746 -16.89373 -16.51408
-16.04192 -14.89718 -14.68796 -14.50800 -14.00055 -13.68287 -13.44086 -12.89659
-12.59629 -12.21085 -11.92262 -11.77652 -11.51470 -11.06507 -10.84614 -10.69336
-10.57360 -10.53763 -10.12070 -10.10762 -9.76121 -9.60267 -8.99709 -8.43323
-8.23899 -7.51996 -6.02409 -4.03007 1.98129 3.06438 3.29904 3.35678
3.37975 3.42573 4.41395 4.54060 5.00557 5.16281 5.26946 5.30824
5.45540 5.66718 5.70525 5.74457 5.87042 5.95833 6.04971 6.18221
6.30513 6.37070 6.49922 6.58214 6.60709 6.75719 7.06167 7.09295
7.35600 7.48153 7.77686 7.98824 8.11893 8.17502 8.46488 9.01365
9.60418 11.07734
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026816 B = 0.009580 C = 0.008323
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1043.901735 B = 2922.116808 C = 3363.457420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 C -0.037 4.037
3 N -0.494 5.494
4 C 0.156 3.844
5 O -0.175 6.175
6 C -0.044 4.044
7 C 0.131 3.869
8 N -0.501 5.501
9 C 0.023 3.977
10 C -0.137 4.137
11 C -0.103 4.103
12 C 0.198 3.802
13 H 0.029 0.971
14 C -0.497 4.497
15 H 0.063 0.937
16 C 0.061 3.939
17 N -0.892 5.892
18 Si 0.894 3.106
19 H -0.272 1.272
20 H -0.286 1.286
21 H -0.285 1.285
22 H 0.070 0.930
23 H 0.069 0.931
24 H 0.071 0.929
25 H 0.241 0.759
26 H 0.091 0.909
27 H 0.095 0.905
28 H 0.043 0.957
29 H 0.064 0.936
30 H 0.049 0.951
31 H 0.055 0.945
32 H 0.069 0.931
33 H 0.056 0.944
34 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.721 4.257 -3.953 9.663
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.157 4.157
3 N -0.224 5.224
4 C -0.071 4.071
5 O -0.059 6.059
6 C -0.100 4.100
7 C 0.002 3.998
8 N -0.223 5.223
9 C -0.105 4.105
10 C -0.175 4.175
11 C -0.142 4.142
12 C 0.093 3.907
13 H 0.047 0.953
14 C -0.535 4.535
15 H 0.081 0.919
16 C -0.140 4.140
17 N -0.531 5.531
18 Si 0.722 3.278
19 H -0.197 1.197
20 H -0.212 1.212
21 H -0.211 1.211
22 H 0.089 0.911
23 H 0.087 0.913
24 H 0.090 0.910
25 H 0.256 0.744
26 H 0.109 0.891
27 H 0.113 0.887
28 H 0.062 0.938
29 H 0.082 0.918
30 H 0.068 0.932
31 H 0.074 0.926
32 H 0.087 0.913
33 H 0.075 0.925
34 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -7.831 4.325 -3.877 9.750
hybrid contribution 1.359 -0.218 -0.055 1.377
sum -6.473 4.106 -3.933 8.615
Atomic orbital electron populations
1.20082 0.87197 1.02557 1.02396 1.21428 0.97576 0.87963 1.08775
1.70242 1.01458 1.31892 1.18807 1.27853 0.97132 0.80527 1.01594
1.84725 1.30037 1.23450 1.67651 1.24618 0.80843 0.99686 1.04873
1.21086 1.00439 0.83500 0.94813 1.65186 1.08540 1.49011 0.99596
1.22974 0.96480 0.96887 0.94132 1.22467 0.99331 0.99857 0.95842
1.22444 0.92591 0.99351 0.99780 1.20560 0.83697 0.96948 0.89503
0.95317 1.20966 0.94327 1.09833 1.28396 0.91910 1.24919 0.98063
0.95891 0.95153 1.69971 1.17944 1.32415 1.32785 0.86499 0.80991
0.81921 0.78355 1.19697 1.21198 1.21103 0.91146 0.91253 0.90992
0.74356 0.89125 0.88695 0.93833 0.91772 0.93245 0.92645 0.91273
0.92494 0.93141
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.88 9.23 36.00 0.33 -0.55 16
2 C -0.04 -0.64 6.27 -82.81 -0.52 -1.16 16
3 N -0.49 -9.00 11.29 -11.18 -0.13 -9.12 16
4 C 0.16 2.71 13.23 52.10 0.69 3.40 16
5 O -0.18 -3.63 9.18 5.34 0.05 -3.58 16
6 C -0.04 -0.84 4.97 -35.69 -0.18 -1.02 16
7 C 0.13 2.43 5.75 -4.98 -0.03 2.40 16
8 N -0.50 -10.54 5.22 -225.43 -1.18 -11.72 16
9 C 0.02 0.43 6.47 -2.76 -0.02 0.41 16
10 C -0.14 -2.66 6.93 -25.38 -0.18 -2.84 16
11 C -0.10 -2.44 5.94 -24.87 -0.15 -2.59 16
12 C 0.20 4.93 1.96 -66.94 -0.13 4.80 16
13 H 0.03 0.80 5.27 -51.93 -0.27 0.52 16
14 C -0.50 -13.53 8.63 -34.44 -0.30 -13.83 16
15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16
16 C 0.06 1.69 5.36 -17.82 -0.10 1.59 16
17 N -0.89 -25.42 12.40 55.43 0.69 -24.73 16
18 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16
19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16
20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
22 H 0.07 0.92 7.28 -51.93 -0.38 0.54 16
23 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
24 H 0.07 0.84 6.89 -51.93 -0.36 0.48 16
25 H 0.24 2.99 8.06 -52.49 -0.42 2.57 16
26 H 0.09 1.36 6.87 -51.93 -0.36 1.00 16
27 H 0.09 1.84 8.09 -51.93 -0.42 1.42 16
28 H 0.04 0.77 3.85 -51.93 -0.20 0.57 16
29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
30 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16
31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16
32 H 0.07 1.77 7.65 -51.93 -0.40 1.37 16
33 H 0.06 1.39 8.05 -51.93 -0.42 0.98 16
34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
LS Contribution 274.37 15.07 4.13 4.13
Total: -1.00 -30.82 274.37 -6.48 -37.30
By element:
Atomic # 1 Polarization: 5.24 SS G_CDS: -4.46 Total: 0.78 kcal
Atomic # 6 Polarization: -8.82 SS G_CDS: -0.57 Total: -9.38 kcal
Atomic # 7 Polarization: -44.96 SS G_CDS: -0.61 Total: -45.57 kcal
Atomic # 8 Polarization: -3.63 SS G_CDS: 0.05 Total: -3.58 kcal
Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal
Total LS contribution 4.13 Total: 4.13 kcal
Total: -30.82 -6.48 -37.30 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259643886.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.639 kcal
(2) G-P(sol) polarization free energy of solvation -30.822 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.817 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.480 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.337 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds