Wall clock time and date at job start Mon Mar 30 2020 03:00:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.34481 * 126.16625 * 2 1
4 4 C 1.30259 * 108.69975 * 179.97438 * 3 2 1
5 5 O 1.33969 * 108.76220 * 359.97438 * 4 3 2
6 6 C 1.34332 * 126.16344 * 179.97438 * 2 1 3
7 7 C 1.50693 * 126.44422 * 359.73854 * 6 2 1
8 8 N 1.46904 * 109.47342 * 262.92496 * 7 6 2
9 9 C 1.47901 * 110.99746 * 64.09936 * 8 7 6
10 10 C 1.53991 * 107.05685 * 214.15727 * 9 8 7
11 11 C 1.54591 * 105.14205 * 1.22605 * 10 9 8
12 12 C 1.48533 * 110.99854 * 306.70556 * 8 7 6
13 13 H 1.08995 * 110.66873 * 41.28463 * 12 8 7
14 14 C 1.50696 * 110.66689 * 278.15530 * 12 8 7
15 15 H 1.07999 * 120.00755 * 359.97438 * 14 12 8
16 16 C 1.37880 * 120.00054 * 180.02562 * 14 12 8
17 17 N 1.31517 * 119.99987 * 359.97438 * 16 14 12
18 18 Si 1.86803 * 120.00282 * 179.97438 * 16 14 12
19 19 H 1.48501 * 109.46876 * 0.02562 * 18 16 14
20 20 H 1.48501 * 109.46823 * 119.99914 * 18 16 14
21 21 H 1.48497 * 109.47462 * 240.00148 * 18 16 14
22 22 H 1.08995 * 109.47723 * 275.81697 * 1 2 3
23 23 H 1.09004 * 109.47189 * 35.82342 * 1 2 3
24 24 H 1.09005 * 109.46973 * 155.82105 * 1 2 3
25 25 H 1.07995 * 125.61384 * 180.02562 * 4 3 2
26 26 H 1.08994 * 109.47304 * 22.93113 * 7 6 2
27 27 H 1.09005 * 109.47104 * 142.93089 * 7 6 2
28 28 H 1.08996 * 109.91918 * 333.51077 * 9 8 7
29 29 H 1.09006 * 109.91354 * 94.80572 * 9 8 7
30 30 H 1.08996 * 110.31113 * 120.14709 * 10 9 8
31 31 H 1.09003 * 110.30504 * 242.21500 * 10 9 8
32 32 H 1.09000 * 110.72838 * 140.31372 * 11 10 9
33 33 H 1.09002 * 110.72580 * 263.60082 * 11 10 9
34 34 H 0.96999 * 120.00019 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0857 0.0000
4 6 3.5431 0.6947 0.0006
5 8 3.5734 -0.6446 0.0015
6 6 2.2996 -1.0845 0.0005
7 6 1.8492 -2.5225 0.0067
8 7 1.8707 -3.0366 1.3827
9 6 0.8970 -2.3172 2.2324
10 6 1.5079 -2.2281 3.6431
11 6 2.8907 -2.9096 3.5282
12 6 3.1978 -2.8166 2.0124
13 1 3.5855 -1.8302 1.7582
14 6 4.1676 -3.8935 1.5991
15 1 3.8490 -4.6798 0.9308
16 6 5.4615 -3.8756 2.0750
17 7 5.8496 -2.9185 2.8892
18 14 6.6635 -5.2109 1.5633
19 1 5.9851 -6.1632 0.6477
20 1 7.8210 -4.5944 0.8665
21 1 7.1401 -5.9362 2.7682
22 1 -0.3634 0.1041 1.0223
23 1 -0.3634 0.8333 -0.6015
24 1 -0.3633 -0.9376 -0.4209
25 1 4.4065 1.3434 0.0011
26 1 0.8360 -2.5876 -0.3898
27 1 2.5208 -3.1163 -0.6134
28 1 0.7279 -1.3156 1.8371
29 1 -0.0426 -2.8685 2.2687
30 1 1.6233 -1.1858 3.9404
31 1 0.8817 -2.7584 4.3607
32 1 3.6378 -2.3665 4.1070
33 1 2.8357 -3.9503 3.8474
34 1 6.7598 -2.9061 3.2243
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259643886.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:45
Heat of formation + Delta-G solvation = 3.120022 kcal
Electronic energy + Delta-G solvation = -17594.836700 eV
Core-core repulsion = 14914.373693 eV
Total energy + Delta-G solvation = -2680.463007 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-44.28476 -39.69475 -36.11152 -34.82991 -33.94459 -31.64368 -30.05497 -28.60045
-26.39733 -25.93368 -23.21306 -22.24386 -21.49474 -20.85189 -18.66715 -17.96875
-17.68542 -16.71057 -16.27964 -16.07065 -15.53197 -15.21616 -14.88729 -14.23895
-13.94760 -13.86807 -13.48249 -13.23900 -13.01670 -12.90103 -12.60862 -12.43731
-12.35684 -11.90759 -11.83888 -11.65227 -11.46707 -11.38758 -10.91610 -10.49779
-9.65169 -9.14904 -8.11965 -6.18661 0.58597 1.39345 1.41440 1.52939
1.71903 2.04374 2.42616 3.19699 3.32585 3.45291 3.84913 4.00446
4.04652 4.13281 4.27503 4.40663 4.63959 4.70835 4.75291 4.86151
4.88701 4.92250 4.99882 5.11663 5.16207 5.27196 5.37284 5.50281
5.51851 5.62601 5.72466 6.13993 6.33968 6.52821 6.80046 6.91741
7.48141 8.97429
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026816 B = 0.009580 C = 0.008323
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1043.901735 B = 2922.116808 C = 3363.457420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.029 4.029
3 N -0.511 5.511
4 C 0.156 3.844
5 O -0.210 6.210
6 C -0.074 4.074
7 C 0.133 3.867
8 N -0.511 5.511
9 C 0.026 3.974
10 C -0.129 4.129
11 C -0.102 4.102
12 C 0.201 3.799
13 H 0.002 0.998
14 C -0.509 4.509
15 H 0.054 0.946
16 C 0.014 3.986
17 N -0.921 5.921
18 Si 0.954 3.046
19 H -0.267 1.267
20 H -0.283 1.283
21 H -0.281 1.281
22 H 0.079 0.921
23 H 0.082 0.918
24 H 0.093 0.907
25 H 0.276 0.724
26 H 0.131 0.869
27 H 0.075 0.925
28 H 0.054 0.946
29 H 0.095 0.905
30 H 0.051 0.949
31 H 0.081 0.919
32 H 0.038 0.962
33 H 0.041 0.959
34 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.383 4.320 -4.463 11.253
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.150 4.150
3 N -0.241 5.241
4 C -0.070 4.070
5 O -0.095 6.095
6 C -0.129 4.129
7 C 0.004 3.996
8 N -0.233 5.233
9 C -0.102 4.102
10 C -0.167 4.167
11 C -0.141 4.141
12 C 0.094 3.906
13 H 0.019 0.981
14 C -0.548 4.548
15 H 0.072 0.928
16 C -0.185 4.185
17 N -0.561 5.561
18 Si 0.780 3.220
19 H -0.191 1.191
20 H -0.209 1.209
21 H -0.207 1.207
22 H 0.098 0.902
23 H 0.101 0.899
24 H 0.112 0.888
25 H 0.291 0.709
26 H 0.148 0.852
27 H 0.094 0.906
28 H 0.072 0.928
29 H 0.113 0.887
30 H 0.070 0.930
31 H 0.099 0.901
32 H 0.057 0.943
33 H 0.060 0.940
34 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -9.523 4.385 -4.397 11.369
hybrid contribution 1.868 -0.172 0.078 1.878
sum -7.655 4.213 -4.319 9.746
Atomic orbital electron populations
1.20269 0.84217 1.04388 1.03422 1.22051 0.99336 0.87072 1.06496
1.70303 1.01895 1.32246 1.19690 1.28789 0.98328 0.79887 0.99968
1.84692 1.31379 1.25011 1.68421 1.24710 0.80698 1.00268 1.07216
1.21126 1.02206 0.83093 0.93200 1.65074 1.06924 1.50336 1.00971
1.23074 0.96674 0.97791 0.92622 1.22430 0.96946 0.99753 0.97612
1.22259 0.94677 0.98397 0.98764 1.20289 0.85306 0.94674 0.90326
0.98072 1.21249 0.95339 1.10168 1.27999 0.92816 1.25650 0.99720
0.97869 0.95271 1.70089 1.18202 1.33962 1.33816 0.85564 0.78841
0.79513 0.78068 1.19120 1.20925 1.20705 0.90241 0.89928 0.88825
0.70889 0.85160 0.90613 0.92830 0.88653 0.93034 0.90050 0.94291
0.94029 0.93225
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.55 9.23 71.23 0.66 -0.89 16
2 C -0.03 -0.96 6.27 41.26 0.26 -0.71 16
3 N -0.51 -17.93 11.29 -304.07 -3.43 -21.36 16
4 C 0.16 5.34 13.23 130.48 1.73 7.07 16
5 O -0.21 -8.81 9.18 -3.80 -0.03 -8.84 16
6 C -0.07 -2.78 4.97 24.79 0.12 -2.66 16
7 C 0.13 4.76 5.75 85.55 0.49 5.25 16
8 N -0.51 -20.94 5.22 -867.12 -4.52 -25.46 16
9 C 0.03 0.88 6.47 86.45 0.56 1.44 16
10 C -0.13 -4.82 6.93 31.47 0.22 -4.60 16
11 C -0.10 -4.90 5.94 31.80 0.19 -4.71 16
12 C 0.20 10.11 1.96 44.51 0.09 10.20 16
13 H 0.00 0.10 5.27 -2.39 -0.01 0.09 16
14 C -0.51 -28.29 8.63 25.60 0.22 -28.07 16
15 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16
16 C 0.01 0.76 5.36 84.66 0.45 1.21 16
17 N -0.92 -53.83 12.40 21.45 0.27 -53.56 16
18 Si 0.95 44.39 29.54 68.60 2.03 46.42 16
19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16
20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16
21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16
22 H 0.08 1.76 7.28 -2.39 -0.02 1.74 16
23 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16
24 H 0.09 1.78 6.89 -2.38 -0.02 1.76 16
25 H 0.28 6.57 8.06 -2.91 -0.02 6.55 16
26 H 0.13 3.51 6.87 -2.39 -0.02 3.49 16
27 H 0.08 2.95 8.09 -2.38 -0.02 2.93 16
28 H 0.05 1.72 3.85 -2.39 -0.01 1.71 16
29 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16
30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16
32 H 0.04 2.06 7.65 -2.39 -0.02 2.04 16
33 H 0.04 2.06 8.05 -2.39 -0.02 2.04 16
34 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16
Total: -1.00 -67.59 274.37 0.38 -67.21
By element:
Atomic # 1 Polarization: 10.97 SS G_CDS: 1.10 Total: 12.07 kcal
Atomic # 6 Polarization: -21.45 SS G_CDS: 4.99 Total: -16.47 kcal
Atomic # 7 Polarization: -92.69 SS G_CDS: -7.69 Total: -100.38 kcal
Atomic # 8 Polarization: -8.81 SS G_CDS: -0.03 Total: -8.84 kcal
Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal
Total: -67.59 0.38 -67.21 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259643886.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.328 kcal
(2) G-P(sol) polarization free energy of solvation -67.592 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.736 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.120 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds