Wall clock time and date at job start Mon Mar 30 2020 03:00:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.34477 * 126.16705 * 2 1
4 4 C 1.30262 * 108.70239 * 180.27295 * 3 2 1
5 5 O 1.33971 * 108.75654 * 359.74858 * 4 3 2
6 6 C 1.34331 * 126.16593 * 179.85013 * 2 1 3
7 7 C 1.50699 * 126.44217 * 0.02562 * 6 2 1
8 8 N 1.46892 * 109.47258 * 89.71315 * 7 6 2
9 9 C 1.48527 * 111.00218 * 52.60227 * 8 7 6
10 10 C 1.54945 * 103.22863 * 159.72149 * 9 8 7
11 11 C 1.54598 * 102.92006 * 322.58662 * 10 9 8
12 12 C 1.47905 * 111.00347 * 170.00338 * 8 7 6
13 13 H 1.09002 * 110.07621 * 333.59358 * 12 8 7
14 14 C 1.50694 * 109.91941 * 94.79891 * 12 8 7
15 15 H 1.08000 * 120.00563 * 359.04554 * 14 12 8
16 16 C 1.37885 * 119.99902 * 179.04717 * 14 12 8
17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12
18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12
19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14
20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14
21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14
22 22 H 1.09001 * 109.46800 * 270.15046 * 1 2 3
23 23 H 1.08997 * 109.47184 * 30.14493 * 1 2 3
24 24 H 1.08997 * 109.46901 * 150.15191 * 1 2 3
25 25 H 1.07996 * 125.62254 * 179.73360 * 4 3 2
26 26 H 1.09003 * 109.47269 * 329.70947 * 7 6 2
27 27 H 1.09009 * 109.46970 * 209.71358 * 7 6 2
28 28 H 1.08994 * 110.66722 * 41.28953 * 9 8 7
29 29 H 1.08996 * 110.66927 * 278.15667 * 9 8 7
30 30 H 1.08995 * 110.72285 * 204.22386 * 10 9 8
31 31 H 1.09002 * 110.87452 * 81.01466 * 10 9 8
32 32 H 1.08998 * 110.30579 * 263.03716 * 11 10 9
33 33 H 1.09001 * 110.39073 * 140.91243 * 11 10 9
34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0856 0.0000
4 6 3.5431 0.6947 -0.0059
5 8 3.5734 -0.6447 -0.0042
6 6 2.2997 -1.0845 0.0028
7 6 1.8493 -2.5226 0.0061
8 7 1.6968 -2.9910 -1.3778
9 6 2.9288 -2.7326 -2.1661
10 6 2.8016 -3.7172 -3.3557
11 6 2.1731 -4.9695 -2.7023
12 6 1.4893 -4.4548 -1.4221
13 1 1.9394 -4.9232 -0.5468
14 6 0.0149 -4.7632 -1.4681
15 1 -0.7059 -3.9591 -1.4495
16 6 -0.4139 -6.0720 -1.5338
17 7 0.4638 -7.0511 -1.5569
18 14 -2.2415 -6.4542 -1.5900
19 1 -2.4378 -7.9247 -1.6583
20 1 -2.8961 -5.9232 -0.3675
21 1 -2.8435 -5.8188 -2.7896
22 1 -0.3633 0.0027 1.0277
23 1 -0.3633 0.8887 -0.5161
24 1 -0.3633 -0.8913 -0.5115
25 1 4.4066 1.3433 -0.0115
26 1 0.8936 -2.6028 0.5242
27 1 2.5923 -3.1349 0.5172
28 1 3.8172 -2.9558 -1.5754
29 1 2.9498 -1.7020 -2.5203
30 1 3.7823 -3.9496 -3.7705
31 1 2.1445 -3.3130 -4.1258
32 1 2.9474 -5.6947 -2.4524
33 1 1.4373 -5.4175 -3.3702
34 1 0.1620 -7.9719 -1.6028
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259643888.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:46
Heat of formation + Delta-G solvation = 23.927811 kcal
Electronic energy + Delta-G solvation = -17047.301191 eV
Core-core repulsion = 14367.740477 eV
Total energy + Delta-G solvation = -2679.560713 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-43.08231 -38.01154 -34.89517 -33.16580 -32.28578 -30.23359 -28.30545 -27.23336
-24.96329 -24.08470 -21.86857 -20.88545 -19.79567 -19.53785 -16.84795 -16.61708
-16.19458 -15.11080 -14.83028 -14.63790 -13.98578 -13.69840 -13.12959 -12.96454
-12.49771 -12.42240 -11.97886 -11.74248 -11.60540 -11.04054 -10.88489 -10.76593
-10.73223 -10.54783 -10.33752 -10.11675 -9.85803 -9.69233 -9.03515 -8.41355
-8.39645 -7.46181 -6.04145 -4.06405 1.72023 2.90036 3.02559 3.32300
3.36823 3.39809 4.35311 4.40033 4.98822 5.07750 5.19210 5.27390
5.54626 5.62501 5.79085 5.83363 5.90190 6.01683 6.09597 6.16763
6.24164 6.30320 6.40177 6.52354 6.60522 6.65428 6.96146 7.05939
7.25017 7.48936 7.81436 7.94572 8.00014 8.07135 8.46144 8.99333
9.57633 11.04778
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.030696 B = 0.007459 C = 0.006417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.959869 B = 3752.728648 C = 4362.631379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 C -0.009 4.009
3 N -0.488 5.488
4 C 0.151 3.849
5 O -0.206 6.206
6 C -0.023 4.023
7 C 0.136 3.864
8 N -0.504 5.504
9 C 0.038 3.962
10 C -0.127 4.127
11 C -0.097 4.097
12 C 0.202 3.798
13 H 0.013 0.987
14 C -0.498 4.498
15 H 0.064 0.936
16 C 0.058 3.942
17 N -0.894 5.894
18 Si 0.896 3.104
19 H -0.289 1.289
20 H -0.277 1.277
21 H -0.277 1.277
22 H 0.068 0.932
23 H 0.069 0.931
24 H 0.088 0.912
25 H 0.243 0.757
26 H 0.109 0.891
27 H 0.044 0.956
28 H 0.031 0.969
29 H 0.059 0.941
30 H 0.051 0.949
31 H 0.063 0.937
32 H 0.042 0.958
33 H 0.072 0.928
34 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.820 9.923 1.987 11.209
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.129 4.129
3 N -0.218 5.218
4 C -0.075 4.075
5 O -0.092 6.092
6 C -0.076 4.076
7 C 0.008 3.992
8 N -0.230 5.230
9 C -0.091 4.091
10 C -0.165 4.165
11 C -0.136 4.136
12 C 0.096 3.904
13 H 0.031 0.969
14 C -0.536 4.536
15 H 0.083 0.917
16 C -0.144 4.144
17 N -0.533 5.533
18 Si 0.724 3.276
19 H -0.215 1.215
20 H -0.203 1.203
21 H -0.202 1.202
22 H 0.086 0.914
23 H 0.088 0.912
24 H 0.107 0.893
25 H 0.259 0.741
26 H 0.127 0.873
27 H 0.063 0.937
28 H 0.050 0.950
29 H 0.077 0.923
30 H 0.070 0.930
31 H 0.082 0.918
32 H 0.061 0.939
33 H 0.091 0.909
34 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 4.223 10.567 1.778 11.517
hybrid contribution 0.235 -1.235 0.329 1.300
sum 4.459 9.332 2.107 10.554
Atomic orbital electron populations
1.20134 0.86424 1.03928 1.02373 1.21448 0.98022 0.87210 1.06188
1.70298 1.01439 1.32154 1.17866 1.27808 0.97464 0.79676 1.02585
1.84436 1.30745 1.24345 1.69679 1.23485 0.80137 0.98431 1.05590
1.20702 1.00739 0.84141 0.93625 1.65080 1.31495 1.19001 1.07391
1.23100 0.91849 0.98615 0.95500 1.22529 0.99405 0.97429 0.97138
1.22309 0.98421 0.94258 0.98583 1.20032 0.96816 0.79751 0.93775
0.96945 1.21042 0.90836 0.91766 1.49998 0.91738 1.24959 0.97716
0.96268 0.95430 1.69974 1.33419 0.99342 1.50578 0.86585 0.85352
0.76930 0.78689 1.21469 1.20279 1.20216 0.91351 0.91232 0.89289
0.74067 0.87317 0.93747 0.95043 0.92294 0.92992 0.91805 0.93933
0.90916 0.92933
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.04 10.05 36.00 0.36 -0.68 16
2 C -0.01 -0.14 7.11 -82.81 -0.59 -0.73 16
3 N -0.49 -7.81 11.29 -11.18 -0.13 -7.94 16
4 C 0.15 2.01 13.23 52.10 0.69 2.70 16
5 O -0.21 -3.27 10.57 5.36 0.06 -3.22 16
6 C -0.02 -0.40 5.66 -35.69 -0.20 -0.60 16
7 C 0.14 2.54 5.19 -4.98 -0.03 2.52 16
8 N -0.50 -10.63 5.00 -225.38 -1.13 -11.76 16
9 C 0.04 0.72 5.42 -1.90 -0.01 0.71 16
10 C -0.13 -2.46 7.06 -24.86 -0.18 -2.64 16
11 C -0.10 -2.25 5.63 -25.37 -0.14 -2.39 16
12 C 0.20 4.91 2.42 -67.80 -0.16 4.75 16
13 H 0.01 0.34 7.58 -51.93 -0.39 -0.05 16
14 C -0.50 -13.22 8.69 -34.44 -0.30 -13.52 16
15 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16
16 C 0.06 1.55 5.08 -17.82 -0.09 1.46 16
17 N -0.89 -24.99 12.36 55.43 0.68 -24.31 16
18 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16
19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
22 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
23 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
24 H 0.09 1.38 7.80 -51.93 -0.40 0.98 16
25 H 0.24 1.86 8.06 -52.49 -0.42 1.44 16
26 H 0.11 1.99 7.81 -51.93 -0.41 1.58 16
27 H 0.04 0.83 7.82 -51.92 -0.41 0.43 16
28 H 0.03 0.59 8.02 -51.93 -0.42 0.18 16
29 H 0.06 1.10 7.90 -51.93 -0.41 0.69 16
30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16
31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16
32 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.07 1.85 7.25 -51.93 -0.38 1.48 16
34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
LS Contribution 284.68 15.07 4.29 4.29
Total: -1.00 -29.49 284.68 -6.78 -36.28
By element:
Atomic # 1 Polarization: 4.08 SS G_CDS: -4.89 Total: -0.81 kcal
Atomic # 6 Polarization: -7.77 SS G_CDS: -0.65 Total: -8.42 kcal
Atomic # 7 Polarization: -43.44 SS G_CDS: -0.57 Total: -44.01 kcal
Atomic # 8 Polarization: -3.27 SS G_CDS: 0.06 Total: -3.22 kcal
Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -29.49 -6.78 -36.28 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259643888.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.206 kcal
(2) G-P(sol) polarization free energy of solvation -29.494 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.713 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.928 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds