Wall clock time and date at job start Mon Mar 30 2020 03:00:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 N 1.34477 * 126.16705 * 2 1
4 4 C 1.30262 * 108.70239 * 180.27295 * 3 2 1
5 5 O 1.33971 * 108.75654 * 359.74858 * 4 3 2
6 6 C 1.34331 * 126.16593 * 179.85013 * 2 1 3
7 7 C 1.50699 * 126.44217 * 0.02562 * 6 2 1
8 8 N 1.46892 * 109.47258 * 89.71315 * 7 6 2
9 9 C 1.48527 * 111.00218 * 52.60227 * 8 7 6
10 10 C 1.54945 * 103.22863 * 159.72149 * 9 8 7
11 11 C 1.54598 * 102.92006 * 322.58662 * 10 9 8
12 12 C 1.47905 * 111.00347 * 170.00338 * 8 7 6
13 13 H 1.09002 * 110.07621 * 333.59358 * 12 8 7
14 14 C 1.50694 * 109.91941 * 94.79891 * 12 8 7
15 15 H 1.08000 * 120.00563 * 359.04554 * 14 12 8
16 16 C 1.37885 * 119.99902 * 179.04717 * 14 12 8
17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12
18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12
19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14
20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14
21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14
22 22 H 1.09001 * 109.46800 * 270.15046 * 1 2 3
23 23 H 1.08997 * 109.47184 * 30.14493 * 1 2 3
24 24 H 1.08997 * 109.46901 * 150.15191 * 1 2 3
25 25 H 1.07996 * 125.62254 * 179.73360 * 4 3 2
26 26 H 1.09003 * 109.47269 * 329.70947 * 7 6 2
27 27 H 1.09009 * 109.46970 * 209.71358 * 7 6 2
28 28 H 1.08994 * 110.66722 * 41.28953 * 9 8 7
29 29 H 1.08996 * 110.66927 * 278.15667 * 9 8 7
30 30 H 1.08995 * 110.72285 * 204.22386 * 10 9 8
31 31 H 1.09002 * 110.87452 * 81.01466 * 10 9 8
32 32 H 1.08998 * 110.30579 * 263.03716 * 11 10 9
33 33 H 1.09001 * 110.39073 * 140.91243 * 11 10 9
34 34 H 0.97001 * 119.99646 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3006 1.0856 0.0000
4 6 3.5431 0.6947 -0.0059
5 8 3.5734 -0.6447 -0.0042
6 6 2.2997 -1.0845 0.0028
7 6 1.8493 -2.5226 0.0061
8 7 1.6968 -2.9910 -1.3778
9 6 2.9288 -2.7326 -2.1661
10 6 2.8016 -3.7172 -3.3557
11 6 2.1731 -4.9695 -2.7023
12 6 1.4893 -4.4548 -1.4221
13 1 1.9394 -4.9232 -0.5468
14 6 0.0149 -4.7632 -1.4681
15 1 -0.7059 -3.9591 -1.4495
16 6 -0.4139 -6.0720 -1.5338
17 7 0.4638 -7.0511 -1.5569
18 14 -2.2415 -6.4542 -1.5900
19 1 -2.4378 -7.9247 -1.6583
20 1 -2.8961 -5.9232 -0.3675
21 1 -2.8435 -5.8188 -2.7896
22 1 -0.3633 0.0027 1.0277
23 1 -0.3633 0.8887 -0.5161
24 1 -0.3633 -0.8913 -0.5115
25 1 4.4066 1.3433 -0.0115
26 1 0.8936 -2.6028 0.5242
27 1 2.5923 -3.1349 0.5172
28 1 3.8172 -2.9558 -1.5754
29 1 2.9498 -1.7020 -2.5203
30 1 3.7823 -3.9496 -3.7705
31 1 2.1445 -3.3130 -4.1258
32 1 2.9474 -5.6947 -2.4524
33 1 1.4373 -5.4175 -3.3702
34 1 0.1620 -7.9719 -1.6028
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259643888.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:46
Heat of formation + Delta-G solvation = 2.610402 kcal
Electronic energy + Delta-G solvation = -17048.225583 eV
Core-core repulsion = 14367.740477 eV
Total energy + Delta-G solvation = -2680.485106 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-44.27670 -39.70613 -36.09884 -34.94962 -33.96526 -31.61928 -30.14012 -28.59523
-26.56782 -25.80812 -23.08013 -22.29488 -21.45419 -21.18426 -18.45880 -17.96655
-17.65546 -16.74402 -16.58087 -16.00117 -15.65884 -15.23990 -14.53327 -14.28442
-14.10298 -13.82863 -13.67897 -13.29080 -12.95456 -12.89479 -12.53337 -12.48737
-12.34733 -11.96614 -11.90491 -11.77674 -11.54361 -11.45601 -10.95192 -10.46128
-9.67423 -9.15316 -8.10277 -6.19122 0.51951 1.45821 1.47103 1.54533
1.72275 1.86006 2.45316 3.19865 3.35258 3.39107 3.74940 3.95774
4.01799 4.16310 4.25460 4.39851 4.56597 4.62657 4.75543 4.78132
4.81539 4.91646 4.95695 5.04254 5.20499 5.22138 5.26504 5.42072
5.51788 5.63632 5.75779 6.12990 6.30483 6.50862 6.77606 6.91388
7.48644 8.97723
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.030696 B = 0.007459 C = 0.006417
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.959869 B = 3752.728648 C = 4362.631379
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C -0.010 4.010
3 N -0.517 5.517
4 C 0.180 3.820
5 O -0.215 6.215
6 C -0.048 4.048
7 C 0.143 3.857
8 N -0.512 5.512
9 C 0.045 3.955
10 C -0.117 4.117
11 C -0.093 4.093
12 C 0.204 3.796
13 H -0.019 1.019
14 C -0.511 4.511
15 H 0.059 0.941
16 C 0.012 3.988
17 N -0.923 5.923
18 Si 0.957 3.043
19 H -0.287 1.287
20 H -0.270 1.270
21 H -0.273 1.273
22 H 0.083 0.917
23 H 0.078 0.922
24 H 0.074 0.926
25 H 0.297 0.703
26 H 0.104 0.896
27 H 0.037 0.963
28 H 0.035 0.965
29 H 0.071 0.929
30 H 0.080 0.920
31 H 0.066 0.934
32 H 0.031 0.969
33 H 0.044 0.956
34 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.243 11.680 1.811 12.930
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.129 4.129
3 N -0.247 5.247
4 C -0.046 4.046
5 O -0.102 6.102
6 C -0.101 4.101
7 C 0.015 3.985
8 N -0.237 5.237
9 C -0.083 4.083
10 C -0.155 4.155
11 C -0.132 4.132
12 C 0.097 3.903
13 H -0.001 1.001
14 C -0.549 4.549
15 H 0.077 0.923
16 C -0.187 4.187
17 N -0.562 5.562
18 Si 0.783 3.217
19 H -0.213 1.213
20 H -0.195 1.195
21 H -0.198 1.198
22 H 0.102 0.898
23 H 0.097 0.903
24 H 0.093 0.907
25 H 0.312 0.688
26 H 0.122 0.878
27 H 0.056 0.944
28 H 0.054 0.946
29 H 0.089 0.911
30 H 0.099 0.901
31 H 0.085 0.915
32 H 0.050 0.950
33 H 0.063 0.937
34 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 4.634 12.345 1.605 13.284
hybrid contribution 0.187 -1.680 0.418 1.742
sum 4.821 10.665 2.023 11.877
Atomic orbital electron populations
1.20152 0.85649 1.03596 1.03317 1.21737 0.98834 0.87377 1.04978
1.70350 1.02504 1.31961 1.19858 1.29090 0.98278 0.78997 0.98205
1.84431 1.30012 1.25652 1.70064 1.23017 0.80965 0.97515 1.08627
1.20492 1.00482 0.85453 0.92117 1.64965 1.32986 1.16534 1.09238
1.23071 0.91146 0.99053 0.94986 1.22491 1.00623 0.95247 0.97096
1.22122 0.97497 0.95672 0.97888 1.19834 0.95663 0.81798 0.92956
1.00091 1.21312 0.92019 0.91841 1.49752 0.92275 1.25689 1.01717
0.96146 0.95120 1.70090 1.35179 0.99520 1.51455 0.85621 0.80537
0.76658 0.78883 1.21258 1.19525 1.19782 0.89794 0.90303 0.90737
0.68821 0.87814 0.94443 0.94634 0.91092 0.90106 0.91486 0.94971
0.93724 0.93026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.97 10.05 71.24 0.72 -1.26 16
2 C -0.01 -0.32 7.11 41.26 0.29 -0.02 16
3 N -0.52 -15.21 11.29 -304.06 -3.43 -18.65 16
4 C 0.18 4.15 13.23 130.48 1.73 5.88 16
5 O -0.21 -6.31 10.57 -3.72 -0.04 -6.35 16
6 C -0.05 -1.62 5.66 24.79 0.14 -1.47 16
7 C 0.14 5.38 5.19 85.56 0.44 5.82 16
8 N -0.51 -21.66 5.00 -866.98 -4.34 -26.00 16
9 C 0.05 1.68 5.42 86.65 0.47 2.15 16
10 C -0.12 -4.38 7.06 31.80 0.22 -4.16 16
11 C -0.09 -4.37 5.63 31.47 0.18 -4.20 16
12 C 0.20 10.18 2.42 44.31 0.11 10.29 16
13 H -0.02 -1.02 7.58 -2.39 -0.02 -1.04 16
14 C -0.51 -27.69 8.69 25.60 0.22 -27.47 16
15 H 0.06 3.20 7.81 -2.91 -0.02 3.17 16
16 C 0.01 0.66 5.08 84.66 0.43 1.09 16
17 N -0.92 -52.74 12.36 21.45 0.27 -52.47 16
18 Si 0.96 43.21 29.54 68.60 2.03 45.23 16
19 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16
20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16
23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16
24 H 0.07 2.31 7.80 -2.39 -0.02 2.29 16
25 H 0.30 2.94 8.06 -2.91 -0.02 2.91 16
26 H 0.10 3.91 7.81 -2.39 -0.02 3.89 16
27 H 0.04 1.44 7.82 -2.38 -0.02 1.42 16
28 H 0.04 1.29 8.02 -2.39 -0.02 1.27 16
29 H 0.07 2.48 7.90 -2.39 -0.02 2.47 16
30 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16
31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
32 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16
33 H 0.04 2.32 7.25 -2.39 -0.02 2.30 16
34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16
Total: -1.00 -63.83 284.68 0.51 -63.32
By element:
Atomic # 1 Polarization: 7.18 SS G_CDS: 1.08 Total: 8.26 kcal
Atomic # 6 Polarization: -18.30 SS G_CDS: 4.95 Total: -13.34 kcal
Atomic # 7 Polarization: -89.61 SS G_CDS: -7.51 Total: -97.11 kcal
Atomic # 8 Polarization: -6.31 SS G_CDS: -0.04 Total: -6.35 kcal
Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal
Total: -63.83 0.51 -63.32 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259643888.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.929 kcal
(2) G-P(sol) polarization free energy of solvation -63.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.318 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.610 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds