Wall clock time and date at job start Mon Mar 30 2020 03:00:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.34332 * 126.16786 * 2 1
4 4 O 1.34751 * 107.11718 * 179.97438 * 3 2 1
5 5 C 1.33967 * 107.75201 * 359.97438 * 4 3 2
6 6 C 1.50702 * 125.61740 * 180.02562 * 5 4 3
7 7 H 1.09003 * 109.52270 * 179.90006 * 6 5 4
8 8 C 1.53111 * 109.52576 * 59.70350 * 6 5 4
9 9 C 1.53033 * 109.28170 * 182.43889 * 8 6 5
10 10 N 1.46850 * 109.52252 * 59.18180 * 9 8 6
11 11 C 1.46848 * 111.19650 * 298.25978 * 10 9 8
12 12 H 1.09002 * 109.46161 * 301.72489 * 11 10 9
13 13 C 1.50702 * 109.45226 * 181.75198 * 11 10 9
14 14 H 1.08001 * 119.99768 * 239.96952 * 13 11 10
15 15 C 1.37874 * 120.00217 * 59.97204 * 13 11 10
16 16 N 1.31513 * 119.99834 * 359.97438 * 15 13 11
17 17 Si 1.86798 * 120.00106 * 179.97438 * 15 13 11
18 18 H 1.48508 * 109.46994 * 89.99950 * 17 15 13
19 19 H 1.48500 * 109.47368 * 210.00003 * 17 15 13
20 20 H 1.48498 * 109.47275 * 330.00518 * 17 15 13
21 21 C 1.53036 * 109.52316 * 61.73949 * 11 10 9
22 22 N 1.30253 * 108.76181 * 0.26152 * 5 4 3
23 23 H 1.08996 * 109.47518 * 89.98260 * 1 2 3
24 24 H 1.08999 * 109.47091 * 209.98508 * 1 2 3
25 25 H 1.09000 * 109.47099 * 329.97675 * 1 2 3
26 26 H 1.08004 * 126.44026 * 359.97218 * 3 2 1
27 27 H 1.08998 * 109.50613 * 302.38691 * 8 6 5
28 28 H 1.09001 * 109.50430 * 62.46206 * 8 6 5
29 29 H 1.09004 * 109.46335 * 179.19340 * 9 8 6
30 30 H 1.08992 * 109.46726 * 299.17966 * 9 8 6
31 31 H 1.00902 * 111.00473 * 174.16217 * 10 9 8
32 32 H 0.96999 * 120.00074 * 179.97438 * 16 15 13
33 33 H 1.08997 * 109.50573 * 60.76693 * 21 11 10
34 34 H 1.08997 * 109.50131 * 180.83835 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2997 1.0845 0.0000
4 8 3.5734 0.6446 0.0006
5 6 3.5431 -0.6947 0.0015
6 6 4.7479 -1.5999 0.0029
7 1 4.4221 -2.6401 0.0052
8 6 5.5935 -1.3244 1.2493
9 6 6.8461 -2.2028 1.2144
10 7 7.6192 -1.9073 0.0014
11 6 6.8442 -2.2091 -1.2088
12 1 6.5515 -3.2590 -1.2002
13 6 7.6877 -1.9330 -2.4268
14 1 7.3631 -1.2039 -3.1545
15 6 8.8738 -2.6111 -2.6122
16 7 9.2693 -3.4985 -1.7258
17 14 9.9189 -2.2693 -4.1222
18 1 10.8785 -1.1760 -3.8230
19 1 10.6674 -3.4967 -4.4944
20 1 9.0420 -1.8632 -5.2497
21 6 5.5916 -1.3308 -1.2463
22 7 2.3006 -1.0856 -0.0041
23 1 -0.3634 0.0003 -1.0276
24 1 -0.3633 -0.8901 0.5136
25 1 -0.3633 0.8898 0.5142
26 1 1.9769 2.1151 -0.0004
27 1 5.8857 -0.2744 1.2660
28 1 5.0118 -1.5544 2.1419
29 1 7.4575 -1.9986 2.0935
30 1 6.5535 -3.2527 1.2115
31 1 8.4972 -2.4046 0.0020
32 1 10.1036 -3.9758 -1.8564
33 1 5.8837 -0.2810 -1.2689
34 1 5.0090 -1.5656 -2.1371
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259644947.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:07
Heat of formation + Delta-G solvation = 6.194761 kcal
Electronic energy + Delta-G solvation = -16730.686618 eV
Core-core repulsion = 14050.356942 eV
Total energy + Delta-G solvation = -2680.329676 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-43.09994 -37.75721 -34.92700 -33.37953 -32.02512 -30.31359 -29.89457 -27.01612
-25.28523 -23.62707 -21.60695 -21.36090 -20.46089 -18.66217 -17.05617 -16.37648
-16.33007 -15.17390 -14.59190 -14.28328 -14.18252 -13.62367 -13.32329 -13.07063
-12.76100 -12.56231 -12.46872 -12.09152 -11.88898 -10.95350 -10.91412 -10.84009
-10.60358 -10.43950 -10.36654 -10.32076 -9.91488 -9.46314 -9.12491 -8.61616
-8.44802 -6.91235 -6.11826 -4.14717 1.68741 2.85335 3.04522 3.29905
3.36403 3.39801 4.16943 4.40200 4.90397 5.00407 5.12381 5.30770
5.44451 5.50614 5.53949 5.67832 5.73037 5.90395 6.08833 6.11903
6.12948 6.21150 6.37111 6.46162 6.51914 6.68344 6.73982 6.83077
6.90903 7.48546 7.86345 8.01296 8.14103 8.64168 8.96093 9.09717
9.53392 10.98530
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039580 B = 0.005884 C = 0.005428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 707.260225 B = 4757.739503 C = 5157.325121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C -0.021 4.021
3 C -0.096 4.096
4 O -0.195 6.195
5 C 0.226 3.774
6 C 0.002 3.998
7 H 0.103 0.897
8 C -0.104 4.104
9 C 0.057 3.943
10 N -0.685 5.685
11 C 0.218 3.782
12 H 0.000 1.000
13 C -0.504 4.504
14 H 0.061 0.939
15 C 0.066 3.934
16 N -0.902 5.902
17 Si 0.899 3.101
18 H -0.279 1.279
19 H -0.287 1.287
20 H -0.274 1.274
21 C -0.097 4.097
22 N -0.496 5.496
23 H 0.072 0.928
24 H 0.073 0.927
25 H 0.071 0.929
26 H 0.209 0.791
27 H 0.071 0.929
28 H 0.055 0.945
29 H 0.059 0.941
30 H 0.016 0.984
31 H 0.366 0.634
32 H 0.264 0.736
33 H 0.065 0.935
34 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.583 6.164 5.037 14.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.140 4.140
3 C -0.166 4.166
4 O -0.081 6.081
5 C 0.019 3.981
6 C -0.017 4.017
7 H 0.121 0.879
8 C -0.143 4.143
9 C -0.074 4.074
10 N -0.323 5.323
11 C 0.110 3.890
12 H 0.017 0.983
13 C -0.543 4.543
14 H 0.079 0.921
15 C -0.135 4.135
16 N -0.542 5.542
17 Si 0.727 3.273
18 H -0.205 1.205
19 H -0.213 1.213
20 H -0.199 1.199
21 C -0.136 4.136
22 N -0.226 5.226
23 H 0.090 0.910
24 H 0.092 0.908
25 H 0.090 0.910
26 H 0.226 0.774
27 H 0.090 0.910
28 H 0.074 0.926
29 H 0.077 0.923
30 H 0.034 0.966
31 H 0.190 0.810
32 H 0.074 0.926
33 H 0.084 0.916
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -11.752 6.089 5.056 14.168
hybrid contribution 0.659 -0.010 -0.748 0.996
sum -11.093 6.078 4.308 13.363
Atomic orbital electron populations
1.20052 0.86936 1.02968 1.02624 1.21793 0.97967 0.88614 1.05666
1.24663 0.80730 1.00731 1.10502 1.84476 1.30023 1.24296 1.69294
1.26745 0.95228 0.79185 0.96942 1.20117 0.86976 0.95188 0.99422
0.87902 1.21622 0.96053 1.01777 0.94862 1.21765 0.94204 0.95593
0.95793 1.60795 1.08390 1.63143 0.99973 1.18971 0.89066 0.92009
0.88933 0.98293 1.21147 1.05543 1.22479 1.05145 0.92117 1.24992
0.97551 0.94319 0.96649 1.69660 1.22934 1.25985 1.35646 0.86476
0.80298 0.77667 0.82825 1.20521 1.21289 1.19930 1.21773 0.96521
1.02176 0.93128 1.70407 1.00655 1.31199 1.20315 0.90951 0.90813
0.91035 0.77435 0.91015 0.92602 0.92265 0.96550 0.80964 0.92574
0.91610 0.92557
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.69 10.43 36.00 0.38 -0.32 16
2 C -0.02 -0.30 7.11 -82.82 -0.59 -0.89 16
3 C -0.10 -1.31 12.08 29.35 0.35 -0.95 16
4 O -0.19 -3.34 10.78 5.36 0.06 -3.28 16
5 C 0.23 4.10 6.86 -12.95 -0.09 4.01 16
6 C 0.00 0.05 2.73 -91.65 -0.25 -0.20 16
7 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16
8 C -0.10 -1.84 5.36 -26.66 -0.14 -1.99 16
9 C 0.06 1.11 6.55 -3.83 -0.03 1.09 16
10 N -0.69 -16.19 6.49 -107.99 -0.70 -16.89 16
11 C 0.22 5.41 2.40 -68.87 -0.16 5.25 16
12 H 0.00 -0.01 8.14 -51.93 -0.42 -0.44 16
13 C -0.50 -13.70 8.76 -34.44 -0.30 -14.01 16
14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16
15 C 0.07 1.79 5.32 -17.82 -0.09 1.70 16
16 N -0.90 -24.91 11.48 55.43 0.64 -24.27 16
17 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16
18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
20 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16
21 C -0.10 -2.08 4.58 -26.65 -0.12 -2.20 16
22 N -0.50 -8.90 11.29 -7.36 -0.08 -8.98 16
23 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
26 H 0.21 1.85 8.06 -52.48 -0.42 1.43 16
27 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.37 9.37 6.65 -39.29 -0.26 9.11 16
32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16
33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16
LS Contribution 283.39 15.07 4.27 4.27
Total: -1.00 -29.43 283.39 -6.76 -36.19
By element:
Atomic # 1 Polarization: 10.34 SS G_CDS: -4.88 Total: 5.46 kcal
Atomic # 6 Polarization: -7.47 SS G_CDS: -1.05 Total: -8.52 kcal
Atomic # 7 Polarization: -49.99 SS G_CDS: -0.15 Total: -50.14 kcal
Atomic # 8 Polarization: -3.34 SS G_CDS: 0.06 Total: -3.28 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal
Total LS contribution 4.27 Total: 4.27 kcal
Total: -29.43 -6.76 -36.19 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259644947.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.387 kcal
(2) G-P(sol) polarization free energy of solvation -29.427 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.960 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.192 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.195 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds