Wall clock time and date at job start Mon Mar 30 2020 03:00:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50694 * 1
3 3 C 1.34332 * 126.16786 * 2 1
4 4 O 1.34751 * 107.11718 * 179.97438 * 3 2 1
5 5 C 1.33967 * 107.75201 * 359.97438 * 4 3 2
6 6 C 1.50702 * 125.61740 * 180.02562 * 5 4 3
7 7 H 1.09003 * 109.52270 * 179.90006 * 6 5 4
8 8 C 1.53111 * 109.52576 * 59.70350 * 6 5 4
9 9 C 1.53033 * 109.28170 * 182.43889 * 8 6 5
10 10 N 1.46850 * 109.52252 * 59.18180 * 9 8 6
11 11 C 1.46848 * 111.19650 * 298.25978 * 10 9 8
12 12 H 1.09002 * 109.46161 * 301.72489 * 11 10 9
13 13 C 1.50702 * 109.45226 * 181.75198 * 11 10 9
14 14 H 1.08001 * 119.99768 * 239.96952 * 13 11 10
15 15 C 1.37874 * 120.00217 * 59.97204 * 13 11 10
16 16 N 1.31513 * 119.99834 * 359.97438 * 15 13 11
17 17 Si 1.86798 * 120.00106 * 179.97438 * 15 13 11
18 18 H 1.48508 * 109.46994 * 89.99950 * 17 15 13
19 19 H 1.48500 * 109.47368 * 210.00003 * 17 15 13
20 20 H 1.48498 * 109.47275 * 330.00518 * 17 15 13
21 21 C 1.53036 * 109.52316 * 61.73949 * 11 10 9
22 22 N 1.30253 * 108.76181 * 0.26152 * 5 4 3
23 23 H 1.08996 * 109.47518 * 89.98260 * 1 2 3
24 24 H 1.08999 * 109.47091 * 209.98508 * 1 2 3
25 25 H 1.09000 * 109.47099 * 329.97675 * 1 2 3
26 26 H 1.08004 * 126.44026 * 359.97218 * 3 2 1
27 27 H 1.08998 * 109.50613 * 302.38691 * 8 6 5
28 28 H 1.09001 * 109.50430 * 62.46206 * 8 6 5
29 29 H 1.09004 * 109.46335 * 179.19340 * 9 8 6
30 30 H 1.08992 * 109.46726 * 299.17966 * 9 8 6
31 31 H 1.00902 * 111.00473 * 174.16217 * 10 9 8
32 32 H 0.96999 * 120.00074 * 179.97438 * 16 15 13
33 33 H 1.08997 * 109.50573 * 60.76693 * 21 11 10
34 34 H 1.08997 * 109.50131 * 180.83835 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2997 1.0845 0.0000
4 8 3.5734 0.6446 0.0006
5 6 3.5431 -0.6947 0.0015
6 6 4.7479 -1.5999 0.0029
7 1 4.4221 -2.6401 0.0052
8 6 5.5935 -1.3244 1.2493
9 6 6.8461 -2.2028 1.2144
10 7 7.6192 -1.9073 0.0014
11 6 6.8442 -2.2091 -1.2088
12 1 6.5515 -3.2590 -1.2002
13 6 7.6877 -1.9330 -2.4268
14 1 7.3631 -1.2039 -3.1545
15 6 8.8738 -2.6111 -2.6122
16 7 9.2693 -3.4985 -1.7258
17 14 9.9189 -2.2693 -4.1222
18 1 10.8785 -1.1760 -3.8230
19 1 10.6674 -3.4967 -4.4944
20 1 9.0420 -1.8632 -5.2497
21 6 5.5916 -1.3308 -1.2463
22 7 2.3006 -1.0856 -0.0041
23 1 -0.3634 0.0003 -1.0276
24 1 -0.3633 -0.8901 0.5136
25 1 -0.3633 0.8898 0.5142
26 1 1.9769 2.1151 -0.0004
27 1 5.8857 -0.2744 1.2660
28 1 5.0118 -1.5544 2.1419
29 1 7.4575 -1.9986 2.0935
30 1 6.5535 -3.2527 1.2115
31 1 8.4972 -2.4046 0.0020
32 1 10.1036 -3.9758 -1.8564
33 1 5.8837 -0.2810 -1.2689
34 1 5.0090 -1.5656 -2.1371
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259644947.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:07
Heat of formation + Delta-G solvation = -15.484479 kcal
Electronic energy + Delta-G solvation = -16731.626700 eV
Core-core repulsion = 14050.356942 eV
Total energy + Delta-G solvation = -2681.269758 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-44.32261 -39.44571 -36.12028 -35.20861 -33.63257 -31.79547 -31.51106 -28.07367
-27.20249 -25.17391 -23.27337 -22.57986 -21.95581 -20.27602 -18.73379 -17.85549
-17.58798 -17.03824 -16.26320 -15.63005 -15.56350 -15.37374 -14.50104 -14.37067
-14.27675 -14.09891 -13.84994 -13.64942 -12.99016 -12.81544 -12.67508 -12.48880
-12.20876 -12.03283 -11.91327 -11.70390 -11.56444 -11.22686 -11.01340 -10.65693
-9.62642 -8.80676 -8.17746 -6.28725 0.49794 1.43841 1.45167 1.54847
1.64861 1.85633 2.43328 2.96956 3.08665 3.76586 3.88854 3.95139
3.97295 4.14474 4.28118 4.47180 4.61119 4.64495 4.79237 4.83956
4.87114 4.88456 4.92210 4.98548 5.03822 5.05927 5.19179 5.25010
5.44472 5.51460 5.78177 6.14440 6.63529 6.79251 6.96683 7.12659
7.43099 8.91272
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039580 B = 0.005884 C = 0.005428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 707.260225 B = 4757.739503 C = 5157.325121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 C -0.042 4.042
3 C -0.082 4.082
4 O -0.210 6.210
5 C 0.201 3.799
6 C 0.011 3.989
7 H 0.097 0.903
8 C -0.094 4.094
9 C 0.055 3.945
10 N -0.692 5.692
11 C 0.219 3.781
12 H -0.034 1.034
13 C -0.531 4.531
14 H 0.054 0.946
15 C 0.023 3.977
16 N -0.923 5.923
17 Si 0.962 3.038
18 H -0.275 1.275
19 H -0.282 1.282
20 H -0.271 1.271
21 C -0.084 4.084
22 N -0.515 5.515
23 H 0.081 0.919
24 H 0.069 0.931
25 H 0.104 0.896
26 H 0.257 0.743
27 H 0.070 0.930
28 H 0.082 0.918
29 H 0.081 0.919
30 H 0.011 0.989
31 H 0.352 0.648
32 H 0.267 0.733
33 H 0.057 0.943
34 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.740 7.687 5.408 15.831
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.161 4.161
3 C -0.151 4.151
4 O -0.096 6.096
5 C -0.005 4.005
6 C -0.008 4.008
7 H 0.115 0.885
8 C -0.132 4.132
9 C -0.075 4.075
10 N -0.328 5.328
11 C 0.111 3.889
12 H -0.017 1.017
13 C -0.570 4.570
14 H 0.073 0.927
15 C -0.177 4.177
16 N -0.563 5.563
17 Si 0.788 3.212
18 H -0.200 1.200
19 H -0.208 1.208
20 H -0.196 1.196
21 C -0.123 4.123
22 N -0.246 5.246
23 H 0.100 0.900
24 H 0.088 0.912
25 H 0.122 0.878
26 H 0.272 0.728
27 H 0.088 0.912
28 H 0.101 0.899
29 H 0.100 0.900
30 H 0.030 0.970
31 H 0.174 0.826
32 H 0.076 0.924
33 H 0.076 0.924
34 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -12.924 7.623 5.437 15.960
hybrid contribution 0.931 -0.458 -0.839 1.335
sum -11.993 7.165 4.598 14.707
Atomic orbital electron populations
1.20203 0.83949 1.04405 1.03674 1.22528 0.99884 0.87908 1.05825
1.25651 0.79169 1.02579 1.07736 1.84464 1.31963 1.23778 1.69351
1.26309 0.94982 0.79674 0.99583 1.19835 0.87314 0.95335 0.98358
0.88502 1.21547 0.95134 1.01087 0.95461 1.21902 0.95028 0.95830
0.94744 1.60758 1.08176 1.62859 1.01034 1.18857 0.90201 0.90729
0.89136 1.01680 1.21463 1.06481 1.22793 1.06258 0.92728 1.25725
0.98541 0.94050 0.99351 1.69765 1.23235 1.26383 1.36919 0.85493
0.78596 0.77606 0.79502 1.20029 1.20756 1.19612 1.21525 0.95497
1.00662 0.94606 1.70376 1.01032 1.33063 1.20160 0.90004 0.91249
0.87769 0.72755 0.91174 0.89908 0.90039 0.97031 0.82588 0.92412
0.92422 0.93316
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.12 10.43 71.23 0.74 -0.38 16
2 C -0.04 -1.13 7.11 41.26 0.29 -0.84 16
3 C -0.08 -1.99 12.08 66.93 0.81 -1.18 16
4 O -0.21 -6.86 10.78 -3.72 -0.04 -6.90 16
5 C 0.20 7.16 6.86 88.34 0.61 7.77 16
6 C 0.01 0.42 2.73 -11.46 -0.03 0.39 16
7 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16
8 C -0.09 -3.23 5.36 30.64 0.16 -3.06 16
9 C 0.05 2.13 6.55 86.32 0.57 2.69 16
10 N -0.69 -33.32 6.49 -495.56 -3.22 -36.54 16
11 C 0.22 11.24 2.40 44.19 0.11 11.35 16
12 H -0.03 -1.94 8.14 -2.39 -0.02 -1.96 16
13 C -0.53 -29.61 8.76 25.60 0.22 -29.39 16
14 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16
15 C 0.02 1.24 5.32 84.65 0.45 1.69 16
16 N -0.92 -51.80 11.48 21.45 0.25 -51.56 16
17 Si 0.96 43.45 29.54 68.60 2.03 45.48 16
18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16
20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
21 C -0.08 -3.70 4.58 30.65 0.14 -3.56 16
22 N -0.52 -17.97 11.29 -291.99 -3.30 -21.27 16
23 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
25 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16
26 H 0.26 3.31 8.06 -2.91 -0.02 3.29 16
27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16
28 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16
29 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16
30 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16
31 H 0.35 18.46 6.65 -89.69 -0.60 17.86 16
32 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16
33 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16
34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16
Total: -1.00 -64.46 283.39 0.28 -64.18
By element:
Atomic # 1 Polarization: 20.64 SS G_CDS: 0.49 Total: 21.13 kcal
Atomic # 6 Polarization: -18.60 SS G_CDS: 4.07 Total: -14.53 kcal
Atomic # 7 Polarization: -103.10 SS G_CDS: -6.27 Total: -109.37 kcal
Atomic # 8 Polarization: -6.86 SS G_CDS: -0.04 Total: -6.90 kcal
Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal
Total: -64.46 0.28 -64.18 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259644947.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.693 kcal
(2) G-P(sol) polarization free energy of solvation -64.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.767 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.177 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.484 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds