Wall clock time and date at job start Mon Mar 30 2020 03:00:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.34336 * 126.16649 * 2 1
4 4 O 1.34750 * 107.11079 * 180.26471 * 3 2 1
5 5 C 1.33966 * 107.75844 * 359.56936 * 4 3 2
6 6 C 1.50697 * 125.62028 * 180.14363 * 5 4 3
7 7 H 1.09000 * 109.52465 * 180.21720 * 6 5 4
8 8 C 1.53121 * 109.52326 * 60.02108 * 6 5 4
9 9 C 1.53033 * 109.27806 * 297.74992 * 8 6 5
10 10 N 1.46845 * 109.52496 * 300.81891 * 9 8 6
11 11 C 1.46845 * 111.19621 * 61.74285 * 10 9 8
12 12 H 1.09003 * 109.45221 * 58.27053 * 11 10 9
13 13 C 1.50699 * 109.46042 * 178.24268 * 11 10 9
14 14 H 1.08002 * 120.00526 * 120.05357 * 13 11 10
15 15 C 1.37882 * 120.00000 * 300.05633 * 13 11 10
16 16 N 1.31513 * 119.99715 * 359.97438 * 15 13 11
17 17 Si 1.86806 * 120.00222 * 180.02562 * 15 13 11
18 18 H 1.48494 * 109.47201 * 59.99209 * 17 15 13
19 19 H 1.48492 * 109.47212 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.46422 * 299.99580 * 17 15 13
21 21 C 1.53037 * 109.52502 * 298.25768 * 11 10 9
22 22 N 1.30260 * 108.75977 * 0.43881 * 5 4 3
23 23 H 1.09001 * 109.47077 * 89.97632 * 1 2 3
24 24 H 1.09001 * 109.47289 * 209.97889 * 1 2 3
25 25 H 1.09003 * 109.47339 * 329.98175 * 1 2 3
26 26 H 1.08002 * 126.43952 * 359.97438 * 3 2 1
27 27 H 1.09003 * 109.50026 * 57.69516 * 8 6 5
28 28 H 1.09004 * 109.50086 * 177.80593 * 8 6 5
29 29 H 1.09004 * 109.45695 * 180.80123 * 9 8 6
30 30 H 1.09003 * 109.45291 * 60.83411 * 9 8 6
31 31 H 1.00897 * 110.99821 * 185.84339 * 10 9 8
32 32 H 0.97002 * 119.99867 * 180.02562 * 16 15 13
33 33 H 1.09005 * 109.50007 * 299.23668 * 21 11 10
34 34 H 1.09004 * 109.50400 * 179.12447 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2997 1.0845 0.0000
4 8 3.5734 0.6446 -0.0059
5 6 3.5431 -0.6947 0.0001
6 6 4.7479 -1.5999 -0.0003
7 1 4.4221 -2.6401 0.0016
8 6 5.5948 -1.3252 1.2455
9 6 6.0983 0.1194 1.2056
10 7 6.8989 0.3268 -0.0078
11 6 6.0940 0.1148 -1.2176
12 1 5.2431 0.7960 -1.2115
13 6 6.9402 0.3791 -2.4363
14 1 7.1025 -0.4047 -3.1614
15 6 7.5072 1.6216 -2.6256
16 7 7.3092 2.5761 -1.7429
17 14 8.5555 1.9495 -4.1366
18 1 7.7410 1.7366 -5.3599
19 1 9.0440 3.3514 -4.1055
20 1 9.7144 1.0210 -4.1458
21 6 5.5903 -1.3300 -1.2502
22 7 2.3005 -1.0857 0.0000
23 1 -0.3633 0.0004 -1.0277
24 1 -0.3634 -0.8902 0.5135
25 1 -0.3634 0.8898 0.5141
26 1 1.9769 2.1151 -0.0004
27 1 4.9877 -1.4745 2.1383
28 1 6.4453 -2.0067 1.2649
29 1 6.7134 0.3139 2.0842
30 1 5.2473 0.8005 1.2001
31 1 7.3210 1.2432 -0.0103
32 1 7.7078 3.4503 -1.8762
33 1 6.4408 -2.0115 -1.2701
34 1 4.9801 -1.4826 -2.1403
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259644957.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:12
Heat of formation + Delta-G solvation = 11.226626 kcal
Electronic energy + Delta-G solvation = -17364.454959 eV
Core-core repulsion = 14684.343481 eV
Total energy + Delta-G solvation = -2680.111478 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-42.90183 -37.75593 -34.68557 -33.25112 -31.78130 -30.21328 -29.85774 -26.85733
-25.24707 -23.40892 -21.65953 -21.22854 -20.48167 -18.67739 -16.63508 -16.23581
-16.13691 -15.12561 -14.47318 -14.21897 -14.00322 -13.58185 -13.09602 -13.03880
-12.55960 -12.40510 -12.34228 -11.96235 -11.79175 -10.95800 -10.90848 -10.85407
-10.73664 -10.38715 -10.29345 -10.14118 -9.86858 -9.28408 -8.99467 -8.57928
-8.26682 -6.82082 -6.08246 -4.11221 1.95159 3.04736 3.29590 3.32716
3.35609 3.38875 4.34238 4.41043 5.09508 5.16945 5.20864 5.39490
5.46787 5.60398 5.65722 5.79832 5.86561 5.91822 6.14418 6.21933
6.28455 6.36484 6.44265 6.47655 6.67749 6.76145 6.79843 6.86401
6.96919 7.61135 7.90422 8.19430 8.22612 8.68943 9.00516 9.14827
9.56094 11.01573
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.029900 B = 0.007936 C = 0.007173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.217359 B = 3527.195131 C = 3902.762659
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.029 4.029
3 C -0.092 4.092
4 O -0.170 6.170
5 C 0.223 3.777
6 C 0.001 3.999
7 H 0.099 0.901
8 C -0.107 4.107
9 C 0.047 3.953
10 N -0.681 5.681
11 C 0.209 3.791
12 H 0.013 0.987
13 C -0.506 4.506
14 H 0.059 0.941
15 C 0.066 3.934
16 N -0.901 5.901
17 Si 0.897 3.103
18 H -0.278 1.278
19 H -0.288 1.288
20 H -0.275 1.275
21 C -0.104 4.104
22 N -0.501 5.501
23 H 0.070 0.930
24 H 0.070 0.930
25 H 0.069 0.931
26 H 0.205 0.795
27 H 0.054 0.946
28 H 0.081 0.919
29 H 0.054 0.946
30 H 0.023 0.977
31 H 0.364 0.636
32 H 0.264 0.736
33 H 0.075 0.925
34 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.349 -3.458 5.087 10.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.148 4.148
3 C -0.163 4.163
4 O -0.055 6.055
5 C 0.016 3.984
6 C -0.019 4.019
7 H 0.117 0.883
8 C -0.146 4.146
9 C -0.083 4.083
10 N -0.319 5.319
11 C 0.102 3.898
12 H 0.030 0.970
13 C -0.544 4.544
14 H 0.077 0.923
15 C -0.135 4.135
16 N -0.541 5.541
17 Si 0.725 3.275
18 H -0.204 1.204
19 H -0.213 1.213
20 H -0.201 1.201
21 C -0.142 4.142
22 N -0.231 5.231
23 H 0.088 0.912
24 H 0.089 0.911
25 H 0.088 0.912
26 H 0.221 0.779
27 H 0.073 0.927
28 H 0.100 0.900
29 H 0.072 0.928
30 H 0.041 0.959
31 H 0.188 0.812
32 H 0.074 0.926
33 H 0.094 0.906
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -8.195 -4.487 5.115 10.651
hybrid contribution 0.075 1.936 -0.806 2.099
sum -8.120 -2.551 4.309 9.540
Atomic orbital electron populations
1.20013 0.87173 1.02696 1.02414 1.21692 0.97736 0.88659 1.06758
1.24788 0.81525 1.00731 1.09301 1.84854 1.28930 1.23753 1.67973
1.26392 0.94763 0.79747 0.97513 1.20063 0.87731 0.94800 0.99305
0.88312 1.21640 0.98704 0.99257 0.94969 1.21941 0.96476 0.94284
0.95647 1.60795 1.32781 1.38302 1.00003 1.19154 0.92696 0.89308
0.88689 0.97010 1.21145 1.31051 0.96900 1.05348 0.92283 1.24994
0.96053 0.95928 0.96542 1.69671 1.45142 1.03588 1.35681 0.86574
0.80748 0.77136 0.83016 1.20404 1.21348 1.20087 1.21803 0.97704
1.01487 0.93240 1.70331 1.00605 1.31328 1.20818 0.91159 0.91062
0.91192 0.77880 0.92691 0.90031 0.92766 0.95882 0.81187 0.92645
0.90612 0.92657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.78 10.43 36.00 0.38 -0.40 16
2 C -0.03 -0.48 7.11 -82.81 -0.59 -1.07 16
3 C -0.09 -1.57 12.08 29.36 0.35 -1.22 16
4 O -0.17 -3.53 6.01 5.37 0.03 -3.50 16
5 C 0.22 4.42 6.47 -12.95 -0.08 4.34 16
6 C 0.00 0.01 3.17 -91.65 -0.29 -0.28 16
7 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16
8 C -0.11 -1.86 5.59 -26.65 -0.15 -2.01 16
9 C 0.05 0.95 6.30 -3.84 -0.02 0.93 16
10 N -0.68 -16.34 6.49 -107.99 -0.70 -17.04 16
11 C 0.21 5.24 2.14 -68.88 -0.15 5.09 16
12 H 0.01 0.35 5.64 -51.93 -0.29 0.05 16
13 C -0.51 -13.88 8.76 -34.44 -0.30 -14.18 16
14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16
15 C 0.07 1.81 5.32 -17.82 -0.09 1.72 16
16 N -0.90 -25.26 11.48 55.43 0.64 -24.63 16
17 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16
18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16
21 C -0.10 -2.19 4.81 -26.65 -0.13 -2.32 16
22 N -0.50 -9.61 11.29 -7.36 -0.08 -9.69 16
23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
26 H 0.20 2.66 8.06 -52.49 -0.42 2.24 16
27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
28 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16
29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
30 H 0.02 0.50 5.65 -51.93 -0.29 0.21 16
31 H 0.36 9.55 6.65 -39.29 -0.26 9.29 16
32 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16
33 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16
34 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16
LS Contribution 273.63 15.07 4.12 4.12
Total: -1.00 -30.11 273.63 -6.71 -36.81
By element:
Atomic # 1 Polarization: 11.75 SS G_CDS: -4.62 Total: 7.13 kcal
Atomic # 6 Polarization: -8.34 SS G_CDS: -1.08 Total: -9.42 kcal
Atomic # 7 Polarization: -51.21 SS G_CDS: -0.15 Total: -51.36 kcal
Atomic # 8 Polarization: -3.53 SS G_CDS: 0.03 Total: -3.50 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 4.12 Total: 4.12 kcal
Total: -30.11 -6.71 -36.81 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259644957.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.040 kcal
(2) G-P(sol) polarization free energy of solvation -30.107 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.933 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.227 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds