Wall clock time and date at job start Mon Mar 30 2020 03:00:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.34336 * 126.16649 * 2 1
4 4 O 1.34750 * 107.11079 * 180.26471 * 3 2 1
5 5 C 1.33966 * 107.75844 * 359.56936 * 4 3 2
6 6 C 1.50697 * 125.62028 * 180.14363 * 5 4 3
7 7 H 1.09000 * 109.52465 * 180.21720 * 6 5 4
8 8 C 1.53121 * 109.52326 * 60.02108 * 6 5 4
9 9 C 1.53033 * 109.27806 * 297.74992 * 8 6 5
10 10 N 1.46845 * 109.52496 * 300.81891 * 9 8 6
11 11 C 1.46845 * 111.19621 * 61.74285 * 10 9 8
12 12 H 1.09003 * 109.45221 * 58.27053 * 11 10 9
13 13 C 1.50699 * 109.46042 * 178.24268 * 11 10 9
14 14 H 1.08002 * 120.00526 * 120.05357 * 13 11 10
15 15 C 1.37882 * 120.00000 * 300.05633 * 13 11 10
16 16 N 1.31513 * 119.99715 * 359.97438 * 15 13 11
17 17 Si 1.86806 * 120.00222 * 180.02562 * 15 13 11
18 18 H 1.48494 * 109.47201 * 59.99209 * 17 15 13
19 19 H 1.48492 * 109.47212 * 179.97438 * 17 15 13
20 20 H 1.48500 * 109.46422 * 299.99580 * 17 15 13
21 21 C 1.53037 * 109.52502 * 298.25768 * 11 10 9
22 22 N 1.30260 * 108.75977 * 0.43881 * 5 4 3
23 23 H 1.09001 * 109.47077 * 89.97632 * 1 2 3
24 24 H 1.09001 * 109.47289 * 209.97889 * 1 2 3
25 25 H 1.09003 * 109.47339 * 329.98175 * 1 2 3
26 26 H 1.08002 * 126.43952 * 359.97438 * 3 2 1
27 27 H 1.09003 * 109.50026 * 57.69516 * 8 6 5
28 28 H 1.09004 * 109.50086 * 177.80593 * 8 6 5
29 29 H 1.09004 * 109.45695 * 180.80123 * 9 8 6
30 30 H 1.09003 * 109.45291 * 60.83411 * 9 8 6
31 31 H 1.00897 * 110.99821 * 185.84339 * 10 9 8
32 32 H 0.97002 * 119.99867 * 180.02562 * 16 15 13
33 33 H 1.09005 * 109.50007 * 299.23668 * 21 11 10
34 34 H 1.09004 * 109.50400 * 179.12447 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2997 1.0845 0.0000
4 8 3.5734 0.6446 -0.0059
5 6 3.5431 -0.6947 0.0001
6 6 4.7479 -1.5999 -0.0003
7 1 4.4221 -2.6401 0.0016
8 6 5.5948 -1.3252 1.2455
9 6 6.0983 0.1194 1.2056
10 7 6.8989 0.3268 -0.0078
11 6 6.0940 0.1148 -1.2176
12 1 5.2431 0.7960 -1.2115
13 6 6.9402 0.3791 -2.4363
14 1 7.1025 -0.4047 -3.1614
15 6 7.5072 1.6216 -2.6256
16 7 7.3092 2.5761 -1.7429
17 14 8.5555 1.9495 -4.1366
18 1 7.7410 1.7366 -5.3599
19 1 9.0440 3.3514 -4.1055
20 1 9.7144 1.0210 -4.1458
21 6 5.5903 -1.3300 -1.2502
22 7 2.3005 -1.0857 0.0000
23 1 -0.3633 0.0004 -1.0277
24 1 -0.3634 -0.8902 0.5135
25 1 -0.3634 0.8898 0.5141
26 1 1.9769 2.1151 -0.0004
27 1 4.9877 -1.4745 2.1383
28 1 6.4453 -2.0067 1.2649
29 1 6.7134 0.3139 2.0842
30 1 5.2473 0.8005 1.2001
31 1 7.3210 1.2432 -0.0103
32 1 7.7078 3.4503 -1.8762
33 1 6.4408 -2.0115 -1.2701
34 1 4.9801 -1.4826 -2.1403
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259644957.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:12
Heat of formation + Delta-G solvation = -11.118956 kcal
Electronic energy + Delta-G solvation = -17365.423936 eV
Core-core repulsion = 14684.343481 eV
Total energy + Delta-G solvation = -2681.080455 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-44.30583 -39.40915 -36.06658 -35.12986 -33.40107 -31.75773 -31.49327 -28.05711
-27.17885 -25.00348 -23.23693 -22.80829 -21.97413 -20.22562 -18.60132 -17.70773
-17.53652 -17.02265 -16.20200 -15.56150 -15.52607 -15.18270 -14.70250 -14.24654
-14.05355 -14.00763 -13.74099 -13.59257 -13.02321 -12.81398 -12.68004 -12.53884
-12.27547 -12.09000 -11.83878 -11.64771 -11.54909 -11.01988 -10.87514 -10.63087
-9.60459 -8.71621 -8.15186 -6.26028 0.56807 1.42402 1.43916 1.51394
1.68354 1.98134 2.43017 3.02805 3.11600 3.87848 3.89574 4.00421
4.07540 4.10458 4.31440 4.55199 4.67193 4.71356 4.77876 4.83413
4.87197 4.94102 4.96363 5.07651 5.09837 5.16685 5.24757 5.33050
5.47732 5.62233 5.85955 6.20188 6.67963 6.83023 7.02421 7.15758
7.45010 8.92831
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.029900 B = 0.007936 C = 0.007173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.217359 B = 3527.195131 C = 3902.762659
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 C -0.034 4.034
3 C -0.107 4.107
4 O -0.199 6.199
5 C 0.201 3.799
6 C 0.004 3.996
7 H 0.125 0.875
8 C -0.098 4.098
9 C 0.045 3.955
10 N -0.686 5.686
11 C 0.210 3.790
12 H -0.020 1.020
13 C -0.532 4.532
14 H 0.055 0.945
15 C 0.021 3.979
16 N -0.923 5.923
17 Si 0.959 3.041
18 H -0.275 1.275
19 H -0.284 1.284
20 H -0.270 1.270
21 C -0.096 4.096
22 N -0.512 5.512
23 H 0.081 0.919
24 H 0.076 0.924
25 H 0.098 0.902
26 H 0.235 0.765
27 H 0.079 0.921
28 H 0.096 0.904
29 H 0.070 0.930
30 H 0.007 0.993
31 H 0.347 0.653
32 H 0.264 0.736
33 H 0.081 0.919
34 H 0.046 0.954
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.067 -4.093 5.402 11.320
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.154 4.154
3 C -0.177 4.177
4 O -0.085 6.085
5 C -0.005 4.005
6 C -0.015 4.015
7 H 0.143 0.857
8 C -0.137 4.137
9 C -0.085 4.085
10 N -0.321 5.321
11 C 0.102 3.898
12 H -0.003 1.003
13 C -0.571 4.571
14 H 0.073 0.927
15 C -0.178 4.178
16 N -0.563 5.563
17 Si 0.785 3.215
18 H -0.201 1.201
19 H -0.209 1.209
20 H -0.195 1.195
21 C -0.135 4.135
22 N -0.243 5.243
23 H 0.099 0.901
24 H 0.094 0.906
25 H 0.116 0.884
26 H 0.251 0.749
27 H 0.097 0.903
28 H 0.115 0.885
29 H 0.089 0.911
30 H 0.025 0.975
31 H 0.168 0.832
32 H 0.073 0.927
33 H 0.100 0.900
34 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -8.925 -5.141 5.437 11.647
hybrid contribution 0.222 2.172 -0.886 2.357
sum -8.704 -2.969 4.551 10.261
Atomic orbital electron populations
1.20184 0.83784 1.04386 1.03613 1.22443 0.99771 0.87742 1.05431
1.25534 0.80521 1.02504 1.09096 1.84823 1.30820 1.24401 1.68442
1.26649 0.95425 0.79758 0.98712 1.20083 0.87242 0.95995 0.98175
0.85734 1.21613 0.99321 0.97252 0.95485 1.22059 0.95788 0.96117
0.94547 1.60780 1.33281 1.36960 1.01070 1.19037 0.91286 0.90939
0.88536 1.00264 1.21535 1.31743 0.97212 1.06560 0.92668 1.25732
0.97136 0.95754 0.99222 1.69794 1.45764 1.03758 1.37026 0.85602
0.79178 0.77060 0.79679 1.20080 1.20917 1.19521 1.21639 0.98164
0.99062 0.94618 1.70341 1.00704 1.32376 1.20884 0.90070 0.90553
0.88361 0.74858 0.90257 0.88546 0.91128 0.97454 0.83179 0.92685
0.90046 0.93530
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.32 10.43 71.24 0.74 -0.58 16
2 C -0.03 -1.09 7.11 41.26 0.29 -0.80 16
3 C -0.11 -3.57 12.08 66.93 0.81 -2.76 16
4 O -0.20 -8.33 6.01 -3.70 -0.02 -8.36 16
5 C 0.20 7.87 6.47 88.34 0.57 8.44 16
6 C 0.00 0.16 3.17 -11.46 -0.04 0.12 16
7 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16
8 C -0.10 -3.24 5.59 30.65 0.17 -3.07 16
9 C 0.04 1.80 6.30 86.32 0.54 2.34 16
10 N -0.69 -33.24 6.49 -495.57 -3.22 -36.46 16
11 C 0.21 10.72 2.14 44.19 0.09 10.81 16
12 H -0.02 -1.14 5.64 -2.39 -0.01 -1.15 16
13 C -0.53 -29.69 8.76 25.60 0.22 -29.46 16
14 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16
15 C 0.02 1.14 5.32 84.66 0.45 1.59 16
16 N -0.92 -52.70 11.48 21.45 0.25 -52.45 16
17 Si 0.96 43.81 29.54 68.60 2.03 45.84 16
18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
19 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
21 C -0.10 -4.07 4.81 30.65 0.15 -3.92 16
22 N -0.51 -19.08 11.29 -291.98 -3.30 -22.38 16
23 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
24 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16
25 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16
26 H 0.24 5.81 8.06 -2.91 -0.02 5.79 16
27 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16
28 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16
29 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16
30 H 0.01 0.33 5.65 -2.39 -0.01 0.31 16
31 H 0.35 18.64 6.65 -89.70 -0.60 18.04 16
32 H 0.26 14.38 8.31 -92.71 -0.77 13.60 16
33 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16
34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16
Total: -1.00 -65.47 273.63 0.25 -65.22
By element:
Atomic # 1 Polarization: 25.37 SS G_CDS: 0.51 Total: 25.87 kcal
Atomic # 6 Polarization: -21.29 SS G_CDS: 4.01 Total: -17.28 kcal
Atomic # 7 Polarization: -105.02 SS G_CDS: -6.27 Total: -111.29 kcal
Atomic # 8 Polarization: -8.33 SS G_CDS: -0.02 Total: -8.36 kcal
Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal
Total: -65.47 0.25 -65.22 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259644957.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.097 kcal
(2) G-P(sol) polarization free energy of solvation -65.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.373 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.254 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.119 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds