Wall clock time and date at job start Mon Mar 30 2020 03:05:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50702 * 109.47184 * 2 1
4 4 N 1.32296 * 120.41252 * 269.72588 * 3 2 1
5 5 C 1.32318 * 120.75987 * 180.27398 * 4 3 2
6 6 O 1.35455 * 119.19852 * 179.97438 * 5 4 3
7 7 N 1.32321 * 121.60822 * 359.97438 * 5 4 3
8 8 C 1.32302 * 120.76016 * 0.02562 * 7 5 4
9 9 C 1.50696 * 120.41186 * 180.02562 * 8 7 5
10 10 C 1.53000 * 109.46975 * 269.97509 * 9 8 7
11 11 C 1.38589 * 119.17368 * 359.97438 * 8 7 5
12 12 C 1.50703 * 120.74125 * 180.02562 * 11 8 7
13 13 C 1.50692 * 109.47299 * 269.98112 * 12 11 8
14 14 H 1.07999 * 119.99957 * 359.97438 * 13 12 11
15 15 C 1.37874 * 120.00281 * 179.97438 * 13 12 11
16 16 N 1.31514 * 119.99691 * 0.02562 * 15 13 12
17 17 Si 1.86798 * 120.00351 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.47159 * 0.02562 * 17 15 13
19 19 H 1.48497 * 109.47256 * 120.00048 * 17 15 13
20 20 H 1.48504 * 109.47009 * 240.00213 * 17 15 13
21 21 H 1.08998 * 109.46750 * 299.99735 * 1 2 3
22 22 H 1.08995 * 109.47196 * 59.99679 * 1 2 3
23 23 H 1.08997 * 109.46923 * 180.02562 * 1 2 3
24 24 H 1.08998 * 109.46750 * 240.00265 * 2 1 3
25 25 H 1.08995 * 109.47196 * 120.00320 * 2 1 3
26 26 H 0.96704 * 113.99724 * 270.02317 * 6 5 4
27 27 H 1.09004 * 109.47625 * 29.97697 * 9 8 7
28 28 H 1.09001 * 109.47079 * 149.98055 * 9 8 7
29 29 H 1.09000 * 109.47341 * 180.02562 * 10 9 8
30 30 H 1.09001 * 109.47336 * 300.00042 * 10 9 8
31 31 H 1.09006 * 109.47209 * 60.00202 * 10 9 8
32 32 H 1.09005 * 109.46829 * 29.98019 * 12 11 8
33 33 H 1.09002 * 109.46967 * 149.97652 * 12 11 8
34 34 H 0.97003 * 120.00178 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2608 2.0504 -1.1409
5 6 2.7070 3.2961 -1.1489
6 8 2.9306 3.9103 -2.3353
7 7 2.9402 3.9564 -0.0262
8 6 2.7331 3.3864 1.1496
9 6 3.0007 4.1459 2.4233
10 6 4.4495 3.9171 2.8587
11 6 2.2658 2.0824 1.1953
12 6 2.0171 1.3990 2.5152
13 6 3.2715 0.6918 2.9590
14 1 4.1600 0.7326 2.3463
15 6 3.2851 -0.0075 4.1472
16 7 2.2031 -0.0577 4.8930
17 14 4.8399 -0.8849 4.6969
18 1 5.9091 -0.6766 3.6876
19 1 5.2812 -0.3373 6.0048
20 1 4.5657 -2.3378 4.8356
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8899
23 1 -0.3633 -1.0276 0.0005
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5139 0.8899
26 1 3.8271 3.7904 -2.6775
27 1 2.8362 5.2100 2.2534
28 1 2.3268 3.7943 3.2045
29 1 4.6430 4.4661 3.7802
30 1 4.6141 2.8530 3.0287
31 1 5.1235 4.2687 2.0775
32 1 1.7355 2.1419 3.2616
33 1 1.2114 0.6736 2.4026
34 1 2.2127 -0.5493 5.7291
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259727352.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:16
Heat of formation + Delta-G solvation = -18.117275 kcal
Electronic energy + Delta-G solvation = -17049.964023 eV
Core-core repulsion = 14368.580098 eV
Total energy + Delta-G solvation = -2681.383925 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.76307 -37.34636 -35.10551 -34.25115 -32.49812 -31.01900 -30.39877 -27.18130
-24.86808 -24.03061 -22.70986 -21.23096 -20.34284 -18.19972 -17.55396 -16.51065
-15.67668 -14.83338 -14.32222 -13.99121 -13.56971 -13.50158 -13.29210 -12.87028
-12.34105 -12.30466 -11.81827 -11.63641 -11.40014 -11.25817 -11.19528 -11.01641
-10.75323 -10.68936 -10.46246 -10.23554 -9.78201 -9.75138 -9.53877 -8.65466
-8.41390 -8.15595 -6.18642 -4.22808 1.49465 1.60783 3.20081 3.29485
3.32638 3.53491 4.19478 4.34930 4.65797 4.97010 5.15736 5.40772
5.51939 5.65504 5.76233 5.82215 5.91040 5.95770 6.09006 6.13878
6.28671 6.34315 6.44361 6.56271 6.60623 6.72837 6.89615 6.95511
7.38995 7.44083 7.47472 7.75903 7.89244 8.12563 8.60891 8.80490
9.41273 10.90623
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022832 B = 0.009259 C = 0.007601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1226.029448 B = 3023.445192 C = 3682.947094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.076 4.076
3 C 0.185 3.815
4 N -0.532 5.532
5 C 0.455 3.545
6 O -0.465 6.465
7 N -0.532 5.532
8 C 0.183 3.817
9 C -0.067 4.067
10 C -0.146 4.146
11 C -0.137 4.137
12 C 0.057 3.943
13 C -0.510 4.510
14 H 0.056 0.944
15 C 0.065 3.935
16 N -0.887 5.887
17 Si 0.890 3.110
18 H -0.272 1.272
19 H -0.282 1.282
20 H -0.282 1.282
21 H 0.060 0.940
22 H 0.049 0.951
23 H 0.061 0.939
24 H 0.074 0.926
25 H 0.108 0.892
26 H 0.399 0.601
27 H 0.070 0.930
28 H 0.095 0.905
29 H 0.056 0.944
30 H 0.083 0.917
31 H 0.044 0.956
32 H 0.038 0.962
33 H 0.039 0.961
34 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.783 2.975 -5.857 6.615
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.114 4.114
3 C 0.040 3.960
4 N -0.258 5.258
5 C 0.150 3.850
6 O -0.267 6.267
7 N -0.257 5.257
8 C 0.038 3.962
9 C -0.105 4.105
10 C -0.204 4.204
11 C -0.142 4.142
12 C 0.019 3.981
13 C -0.548 4.548
14 H 0.074 0.926
15 C -0.137 4.137
16 N -0.525 5.525
17 Si 0.717 3.283
18 H -0.197 1.197
19 H -0.208 1.208
20 H -0.208 1.208
21 H 0.079 0.921
22 H 0.069 0.931
23 H 0.080 0.920
24 H 0.093 0.907
25 H 0.126 0.874
26 H 0.256 0.744
27 H 0.089 0.911
28 H 0.113 0.887
29 H 0.075 0.925
30 H 0.102 0.898
31 H 0.063 0.937
32 H 0.056 0.944
33 H 0.058 0.942
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 0.316 3.594 -6.628 7.546
hybrid contribution 1.233 -0.880 0.801 1.713
sum 1.549 2.714 -5.828 6.612
Atomic orbital electron populations
1.21660 0.94386 1.01891 1.01882 1.20571 0.96232 0.90021 1.04553
1.21379 0.91891 0.96294 0.86454 1.67599 1.16406 1.09562 1.32198
1.19982 0.95038 0.85087 0.84940 1.84696 1.36568 1.73273 1.32161
1.67599 1.19855 1.39808 0.98443 1.21395 0.91160 0.91420 0.92212
1.20471 0.99397 0.98528 0.92130 1.21743 0.94075 1.04600 0.99975
1.22123 0.97223 0.94893 0.99913 1.18351 0.98167 0.95453 0.86111
1.20910 0.96713 1.31816 1.05388 0.92592 1.24937 0.96187 0.96210
0.96398 1.69941 1.27462 1.41748 1.13378 0.86561 0.83392 0.79564
0.78750 1.19697 1.20827 1.20848 0.92135 0.93140 0.92009 0.90706
0.87383 0.74403 0.91147 0.88699 0.92531 0.89766 0.93696 0.94362
0.94242 0.92692
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.19 9.78 37.16 0.36 -1.82 16
2 C -0.08 -1.34 5.58 -27.88 -0.16 -1.49 16
3 C 0.19 3.72 6.08 -82.26 -0.50 3.22 16
4 N -0.53 -10.69 10.40 -10.95 -0.11 -10.81 16
5 C 0.45 8.91 8.72 -91.25 -0.80 8.11 16
6 O -0.47 -7.64 13.64 -18.06 -0.25 -7.88 16
7 N -0.53 -10.72 10.40 -10.95 -0.11 -10.83 16
8 C 0.18 3.69 6.08 -82.26 -0.50 3.19 16
9 C -0.07 -1.20 5.89 -27.88 -0.16 -1.36 16
10 C -0.15 -2.51 9.89 37.16 0.37 -2.14 16
11 C -0.14 -2.89 5.10 -104.36 -0.53 -3.43 16
12 C 0.06 1.30 4.08 -29.04 -0.12 1.18 16
13 C -0.51 -12.62 7.32 -34.45 -0.25 -12.87 16
14 H 0.06 1.41 7.57 -52.49 -0.40 1.02 16
15 C 0.07 1.66 5.46 -17.82 -0.10 1.57 16
16 N -0.89 -23.77 13.29 55.43 0.74 -23.03 16
17 Si 0.89 19.95 29.54 -169.99 -5.02 14.92 16
18 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16
19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
21 H 0.06 0.99 7.45 -51.93 -0.39 0.61 16
22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
25 H 0.11 2.07 6.54 -51.93 -0.34 1.73 16
26 H 0.40 4.38 9.06 45.56 0.41 4.79 16
27 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
28 H 0.09 1.73 6.07 -51.93 -0.32 1.41 16
29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
30 H 0.08 1.66 6.43 -51.93 -0.33 1.33 16
31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16
32 H 0.04 0.91 6.08 -51.93 -0.32 0.60 16
33 H 0.04 0.94 6.05 -51.93 -0.31 0.62 16
34 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16
LS Contribution 284.98 15.07 4.29 4.29
Total: -1.00 -28.72 284.98 -6.51 -35.23
By element:
Atomic # 1 Polarization: 7.61 SS G_CDS: -3.66 Total: 3.95 kcal
Atomic # 6 Polarization: -3.46 SS G_CDS: -2.38 Total: -5.85 kcal
Atomic # 7 Polarization: -45.17 SS G_CDS: 0.51 Total: -44.67 kcal
Atomic # 8 Polarization: -7.64 SS G_CDS: -0.25 Total: -7.88 kcal
Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -28.72 -6.51 -35.23 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259727352.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.116 kcal
(2) G-P(sol) polarization free energy of solvation -28.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.117 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds