Wall clock time and date at job start Mon Mar 30 2020 03:05:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50702 * 109.47184 * 2 1
4 4 N 1.32296 * 120.41252 * 269.72588 * 3 2 1
5 5 C 1.32318 * 120.75987 * 180.27398 * 4 3 2
6 6 O 1.35455 * 119.19852 * 179.97438 * 5 4 3
7 7 N 1.32321 * 121.60822 * 359.97438 * 5 4 3
8 8 C 1.32302 * 120.76016 * 0.02562 * 7 5 4
9 9 C 1.50696 * 120.41186 * 180.02562 * 8 7 5
10 10 C 1.53000 * 109.46975 * 269.97509 * 9 8 7
11 11 C 1.38589 * 119.17368 * 359.97438 * 8 7 5
12 12 C 1.50703 * 120.74125 * 180.02562 * 11 8 7
13 13 C 1.50692 * 109.47299 * 269.98112 * 12 11 8
14 14 H 1.07999 * 119.99957 * 359.97438 * 13 12 11
15 15 C 1.37874 * 120.00281 * 179.97438 * 13 12 11
16 16 N 1.31514 * 119.99691 * 0.02562 * 15 13 12
17 17 Si 1.86798 * 120.00351 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.47159 * 0.02562 * 17 15 13
19 19 H 1.48497 * 109.47256 * 120.00048 * 17 15 13
20 20 H 1.48504 * 109.47009 * 240.00213 * 17 15 13
21 21 H 1.08998 * 109.46750 * 299.99735 * 1 2 3
22 22 H 1.08995 * 109.47196 * 59.99679 * 1 2 3
23 23 H 1.08997 * 109.46923 * 180.02562 * 1 2 3
24 24 H 1.08998 * 109.46750 * 240.00265 * 2 1 3
25 25 H 1.08995 * 109.47196 * 120.00320 * 2 1 3
26 26 H 0.96704 * 113.99724 * 270.02317 * 6 5 4
27 27 H 1.09004 * 109.47625 * 29.97697 * 9 8 7
28 28 H 1.09001 * 109.47079 * 149.98055 * 9 8 7
29 29 H 1.09000 * 109.47341 * 180.02562 * 10 9 8
30 30 H 1.09001 * 109.47336 * 300.00042 * 10 9 8
31 31 H 1.09006 * 109.47209 * 60.00202 * 10 9 8
32 32 H 1.09005 * 109.46829 * 29.98019 * 12 11 8
33 33 H 1.09002 * 109.46967 * 149.97652 * 12 11 8
34 34 H 0.97003 * 120.00178 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 7 2.2608 2.0504 -1.1409
5 6 2.7070 3.2961 -1.1489
6 8 2.9306 3.9103 -2.3353
7 7 2.9402 3.9564 -0.0262
8 6 2.7331 3.3864 1.1496
9 6 3.0007 4.1459 2.4233
10 6 4.4495 3.9171 2.8587
11 6 2.2658 2.0824 1.1953
12 6 2.0171 1.3990 2.5152
13 6 3.2715 0.6918 2.9590
14 1 4.1600 0.7326 2.3463
15 6 3.2851 -0.0075 4.1472
16 7 2.2031 -0.0577 4.8930
17 14 4.8399 -0.8849 4.6969
18 1 5.9091 -0.6766 3.6876
19 1 5.2812 -0.3373 6.0048
20 1 4.5657 -2.3378 4.8356
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8899
23 1 -0.3633 -1.0276 0.0005
24 1 1.8933 -0.5138 -0.8900
25 1 1.8934 -0.5139 0.8899
26 1 3.8271 3.7904 -2.6775
27 1 2.8362 5.2100 2.2534
28 1 2.3268 3.7943 3.2045
29 1 4.6430 4.4661 3.7802
30 1 4.6141 2.8530 3.0287
31 1 5.1235 4.2687 2.0775
32 1 1.7355 2.1419 3.2616
33 1 1.2114 0.6736 2.4026
34 1 2.2127 -0.5493 5.7291
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259727352.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:16
Heat of formation + Delta-G solvation = -39.167848 kcal
Electronic energy + Delta-G solvation = -17050.876844 eV
Core-core repulsion = 14368.580098 eV
Total energy + Delta-G solvation = -2682.296746 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-42.30086 -38.75207 -36.58802 -35.92109 -34.23290 -32.48098 -31.99016 -28.92440
-26.31700 -25.75232 -24.19524 -22.86608 -21.81575 -19.60396 -19.09549 -18.45457
-17.13976 -16.67624 -15.78418 -15.44167 -15.13739 -14.96054 -14.82027 -14.31421
-14.16690 -13.71292 -13.33501 -13.10550 -13.02925 -12.91379 -12.63800 -12.54622
-12.40493 -12.26787 -11.94868 -11.71936 -11.55222 -11.35238 -11.27772 -10.54484
-10.03812 -9.79118 -8.14362 -6.23043 -0.05586 0.04835 1.41937 1.46544
1.55248 2.11701 2.43434 2.69551 3.13779 3.19032 3.49437 3.96772
4.01028 4.27457 4.35812 4.43993 4.49491 4.55264 4.60969 4.69370
4.90983 5.02935 5.08648 5.14924 5.22096 5.29465 5.35698 5.49247
5.57110 5.65772 5.79636 5.98857 6.20329 6.58701 6.84768 7.05193
7.43403 8.94992
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022832 B = 0.009259 C = 0.007601
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1226.029448 B = 3023.445192 C = 3682.947094
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.074 4.074
3 C 0.184 3.816
4 N -0.541 5.541
5 C 0.458 3.542
6 O -0.464 6.464
7 N -0.541 5.541
8 C 0.182 3.818
9 C -0.066 4.066
10 C -0.139 4.139
11 C -0.163 4.163
12 C 0.072 3.928
13 C -0.507 4.507
14 H 0.047 0.953
15 C 0.023 3.977
16 N -0.919 5.919
17 Si 0.945 3.055
18 H -0.270 1.270
19 H -0.280 1.280
20 H -0.281 1.281
21 H 0.045 0.955
22 H 0.055 0.945
23 H 0.085 0.915
24 H 0.091 0.909
25 H 0.089 0.911
26 H 0.424 0.576
27 H 0.091 0.909
28 H 0.086 0.914
29 H 0.079 0.921
30 H 0.054 0.946
31 H 0.051 0.949
32 H 0.024 0.976
33 H 0.026 0.974
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.453 3.235 -6.678 7.561
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.112 4.112
3 C 0.039 3.961
4 N -0.267 5.267
5 C 0.153 3.847
6 O -0.269 6.269
7 N -0.267 5.267
8 C 0.037 3.963
9 C -0.104 4.104
10 C -0.197 4.197
11 C -0.167 4.167
12 C 0.034 3.966
13 C -0.545 4.545
14 H 0.065 0.935
15 C -0.177 4.177
16 N -0.558 5.558
17 Si 0.771 3.229
18 H -0.195 1.195
19 H -0.205 1.205
20 H -0.206 1.206
21 H 0.064 0.936
22 H 0.074 0.926
23 H 0.104 0.896
24 H 0.110 0.890
25 H 0.107 0.893
26 H 0.285 0.715
27 H 0.109 0.891
28 H 0.104 0.896
29 H 0.098 0.902
30 H 0.074 0.926
31 H 0.070 0.930
32 H 0.042 0.958
33 H 0.044 0.956
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 1.011 3.858 -7.472 8.469
hybrid contribution 1.031 -0.898 0.948 1.664
sum 2.043 2.960 -6.523 7.449
Atomic orbital electron populations
1.21618 0.92765 1.03357 1.01372 1.20596 0.97558 0.88679 1.04353
1.21712 0.90962 0.97164 0.86246 1.67708 1.17219 1.09937 1.31828
1.20281 0.93719 0.84936 0.85719 1.84650 1.38754 1.72764 1.30753
1.67706 1.20655 1.39799 0.98506 1.21713 0.90171 0.91269 0.93119
1.20525 0.99576 0.99416 0.90910 1.21665 0.93702 1.02962 1.01347
1.21990 0.99573 0.95730 0.99369 1.18052 0.97010 0.94631 0.86871
1.21027 0.96950 1.31399 1.05080 0.93464 1.25567 0.98534 0.96989
0.96600 1.70030 1.29098 1.42841 1.13853 0.85692 0.80395 0.78497
0.78270 1.19492 1.20540 1.20645 0.93593 0.92578 0.89608 0.89042
0.89270 0.71481 0.89075 0.89589 0.90238 0.92645 0.92986 0.95820
0.95556 0.92637
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.02 9.78 71.98 0.70 -3.31 16
2 C -0.07 -2.56 5.58 29.85 0.17 -2.39 16
3 C 0.18 7.30 6.08 42.57 0.26 7.56 16
4 N -0.54 -21.00 10.40 -301.50 -3.14 -24.13 16
5 C 0.46 17.18 8.72 180.57 1.57 18.76 16
6 O -0.46 -14.09 13.64 -87.52 -1.19 -15.28 16
7 N -0.54 -21.02 10.40 -301.51 -3.14 -24.16 16
8 C 0.18 7.23 6.08 42.57 0.26 7.49 16
9 C -0.07 -2.31 5.89 29.85 0.18 -2.13 16
10 C -0.14 -4.61 9.89 71.98 0.71 -3.90 16
11 C -0.16 -6.85 5.10 -19.69 -0.10 -6.96 16
12 C 0.07 3.37 4.08 29.10 0.12 3.49 16
13 C -0.51 -25.32 7.32 25.60 0.19 -25.13 16
14 H 0.05 2.41 7.57 -2.91 -0.02 2.39 16
15 C 0.02 1.16 5.46 84.65 0.46 1.62 16
16 N -0.92 -49.70 13.29 21.45 0.28 -49.42 16
17 Si 0.95 40.86 29.54 68.60 2.03 42.88 16
18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16
19 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16
21 H 0.04 1.50 7.45 -2.39 -0.02 1.48 16
22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16
24 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16
25 H 0.09 3.43 6.54 -2.39 -0.02 3.42 16
26 H 0.42 8.10 9.06 -74.05 -0.67 7.43 16
27 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16
28 H 0.09 3.14 6.07 -2.39 -0.01 3.13 16
29 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16
30 H 0.05 2.17 6.43 -2.39 -0.02 2.15 16
31 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16
32 H 0.02 1.17 6.08 -2.38 -0.01 1.15 16
33 H 0.03 1.28 6.05 -2.39 -0.01 1.27 16
34 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16
Total: -1.00 -59.72 284.98 -0.19 -59.91
By element:
Atomic # 1 Polarization: 14.68 SS G_CDS: 0.45 Total: 15.12 kcal
Atomic # 6 Polarization: -9.44 SS G_CDS: 4.52 Total: -4.92 kcal
Atomic # 7 Polarization: -91.73 SS G_CDS: -5.99 Total: -97.71 kcal
Atomic # 8 Polarization: -14.09 SS G_CDS: -1.19 Total: -15.28 kcal
Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.88 kcal
Total: -59.72 -0.19 -59.91 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259727352.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.737 kcal
(2) G-P(sol) polarization free energy of solvation -59.718 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.981 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.905 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.168 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds