Wall clock time and date at job start Mon Mar 30 2020 03:03:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30265 * 125.61551 * 2 1
4 4 C 1.34481 * 108.69905 * 180.02562 * 3 2 1
5 5 C 1.34331 * 107.66848 * 0.02562 * 4 3 2
6 6 C 1.50703 * 126.44228 * 179.97438 * 5 4 3
7 7 H 1.08994 * 109.46324 * 10.80308 * 6 5 4
8 8 C 1.53032 * 109.45983 * 250.82762 * 6 5 4
9 9 C 1.53125 * 109.27820 * 299.15884 * 8 6 5
10 10 H 1.08998 * 109.51887 * 62.25873 * 9 8 6
11 11 C 1.50699 * 109.52341 * 182.44237 * 9 8 6
12 12 H 1.08003 * 120.00063 * 27.69755 * 11 9 8
13 13 C 1.37871 * 120.00053 * 207.69697 * 11 9 8
14 14 N 1.31524 * 119.99975 * 186.39829 * 13 11 9
15 15 Si 1.86796 * 120.00236 * 6.40238 * 13 11 9
16 16 H 1.48498 * 109.47151 * 84.80378 * 15 13 11
17 17 H 1.48497 * 109.47162 * 204.80863 * 15 13 11
18 18 H 1.48502 * 109.47073 * 324.80579 * 15 13 11
19 19 C 1.53114 * 109.16237 * 302.35158 * 9 8 6
20 20 C 1.53028 * 109.28206 * 57.65109 * 19 9 8
21 21 N 1.46846 * 109.46043 * 130.77380 * 6 5 4
22 22 O 1.33964 * 125.62507 * 180.33878 * 2 1 3
23 23 H 1.08996 * 109.46621 * 89.97814 * 1 2 3
24 24 H 1.08996 * 109.46710 * 209.97033 * 1 2 3
25 25 H 1.09001 * 109.47032 * 329.97112 * 1 2 3
26 26 H 1.07991 * 126.16176 * 180.02562 * 4 3 2
27 27 H 1.09000 * 109.50391 * 179.22470 * 8 6 5
28 28 H 1.09000 * 109.54235 * 59.12471 * 8 6 5
29 29 H 0.96997 * 119.99954 * 179.97438 * 14 13 11
30 30 H 1.09001 * 109.50122 * 177.59349 * 19 9 8
31 31 H 1.09008 * 109.50310 * 297.70718 * 19 9 8
32 32 H 1.08997 * 109.46879 * 180.80409 * 20 19 9
33 33 H 1.09004 * 109.45465 * 60.82639 * 20 19 9
34 34 H 1.00904 * 110.99873 * 182.37071 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0590 0.0000
4 6 3.5522 0.6677 -0.0006
5 6 3.5699 -0.6755 -0.0015
6 6 4.7938 -1.5547 -0.0029
7 1 5.6779 -0.9469 0.1895
8 6 4.9305 -2.2361 -1.3664
9 6 3.6960 -3.1048 -1.6234
10 1 2.8074 -2.4744 -1.6559
11 6 3.8521 -3.8253 -2.9378
12 1 4.8380 -4.0578 -3.3125
13 6 2.7362 -4.1878 -3.6619
14 7 2.8651 -4.9252 -4.7434
15 14 1.0415 -3.6315 -3.1073
16 1 0.7706 -2.2696 -3.6338
17 1 0.0173 -4.5746 -3.6237
18 1 0.9892 -3.6079 -1.6234
19 6 3.5569 -4.1276 -0.4925
20 6 3.4600 -3.3914 0.8455
21 7 4.6644 -2.5753 1.0450
22 8 2.2873 -1.0889 -0.0064
23 1 -0.3632 0.0004 -1.0277
24 1 -0.3632 -0.8902 0.5134
25 1 -0.3633 0.8897 0.5143
26 1 4.4156 1.3164 -0.0003
27 1 5.8232 -2.8615 -1.3728
28 1 5.0113 -1.4787 -2.1460
29 1 2.0800 -5.1805 -5.2526
30 1 2.6558 -4.7210 -0.6475
31 1 4.4280 -4.7828 -0.4852
32 1 3.3752 -4.1173 1.6542
33 1 2.5810 -2.7468 0.8424
34 1 5.4898 -3.1539 1.0902
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259784162.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:06
Heat of formation + Delta-G solvation = 16.204013 kcal
Electronic energy + Delta-G solvation = -17645.648576 eV
Core-core repulsion = 14965.752934 eV
Total energy + Delta-G solvation = -2679.895642 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-43.05596 -38.41038 -34.39461 -33.28768 -32.17932 -30.92249 -30.41078 -27.11031
-25.34685 -22.75721 -22.24737 -21.64417 -20.51866 -19.26940 -17.08031 -16.49766
-16.24173 -15.65080 -14.62496 -14.29095 -13.78514 -13.64964 -13.29410 -13.05289
-12.86298 -12.83161 -12.53655 -12.40619 -11.90714 -11.55584 -11.24950 -10.96221
-10.79666 -10.45635 -10.16757 -9.95808 -9.79787 -9.61397 -9.16260 -8.55045
-8.43214 -7.84766 -6.13088 -4.11781 1.80360 2.97904 2.98264 3.24476
3.32237 3.36223 4.31673 4.38338 4.60416 4.93429 5.16438 5.24161
5.34418 5.44665 5.52986 5.62882 5.69575 5.74353 5.97065 6.04427
6.07722 6.22892 6.31470 6.42743 6.59240 6.67476 6.74420 6.82312
7.08346 7.35998 7.44834 7.62733 7.73589 8.04404 8.46177 8.91432
9.50962 11.00218
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022313 B = 0.011825 C = 0.009283
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1254.550136 B = 2367.362845 C = 3015.700556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 C 0.166 3.834
3 N -0.485 5.485
4 C -0.054 4.054
5 C -0.001 4.001
6 C 0.163 3.837
7 H 0.105 0.895
8 C -0.135 4.135
9 C 0.015 3.985
10 H 0.036 0.964
11 C -0.513 4.513
12 H 0.071 0.929
13 C 0.072 3.928
14 N -0.900 5.900
15 Si 0.870 3.130
16 H -0.278 1.278
17 H -0.290 1.290
18 H -0.259 1.259
19 C -0.145 4.145
20 C 0.039 3.961
21 N -0.680 5.680
22 O -0.180 6.180
23 H 0.088 0.912
24 H 0.085 0.915
25 H 0.097 0.903
26 H 0.179 0.821
27 H 0.067 0.933
28 H 0.064 0.936
29 H 0.263 0.737
30 H 0.055 0.945
31 H 0.053 0.947
32 H 0.063 0.937
33 H 0.080 0.920
34 H 0.345 0.655
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.959 7.224 11.043 13.231
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.040 4.040
3 N -0.216 5.216
4 C -0.193 4.193
5 C -0.055 4.055
6 C 0.052 3.948
7 H 0.122 0.878
8 C -0.174 4.174
9 C -0.004 4.004
10 H 0.054 0.946
11 C -0.551 4.551
12 H 0.089 0.911
13 C -0.129 4.129
14 N -0.538 5.538
15 Si 0.697 3.303
16 H -0.204 1.204
17 H -0.216 1.216
18 H -0.183 1.183
19 C -0.184 4.184
20 C -0.090 4.090
21 N -0.310 5.310
22 O -0.067 6.067
23 H 0.107 0.893
24 H 0.104 0.896
25 H 0.115 0.885
26 H 0.196 0.804
27 H 0.085 0.915
28 H 0.082 0.918
29 H 0.073 0.927
30 H 0.074 0.926
31 H 0.072 0.928
32 H 0.081 0.919
33 H 0.098 0.902
34 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -1.626 8.115 11.347 14.044
hybrid contribution -0.337 -1.035 -0.778 1.338
sum -1.962 7.080 10.568 12.871
Atomic orbital electron populations
1.20196 0.82157 1.04596 1.04461 1.26201 0.96492 0.79517 1.01807
1.70344 1.02045 1.30393 1.18771 1.22881 0.94989 0.92752 1.08690
1.23364 0.83487 0.94769 1.03920 1.20319 0.89947 0.91834 0.92669
0.87769 1.22339 1.01102 0.99596 0.94408 1.19171 0.93523 0.93072
0.94593 0.94588 1.20983 0.94753 1.36691 1.02648 0.91080 1.25027
0.98898 0.94299 0.94718 1.69916 1.30150 1.36305 1.17411 0.86954
0.84575 0.78727 0.80002 1.20353 1.21587 1.18332 1.22495 1.01435
0.99533 0.94968 1.22413 0.93214 0.96095 0.97231 1.60839 1.06576
1.17747 1.45812 1.84643 1.16678 1.36449 1.68887 0.89305 0.89630
0.88451 0.80354 0.91479 0.91755 0.92675 0.92579 0.92809 0.91879
0.90235 0.83663
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.70 10.51 36.01 0.38 -0.32 16
2 C 0.17 2.85 8.34 -12.94 -0.11 2.74 16
3 N -0.49 -8.57 11.30 -11.10 -0.13 -8.70 16
4 C -0.05 -0.90 11.79 -17.77 -0.21 -1.11 16
5 C 0.00 -0.03 5.46 -35.69 -0.19 -0.22 16
6 C 0.16 2.62 3.57 -68.88 -0.25 2.37 16
7 H 0.10 1.36 8.12 -51.93 -0.42 0.94 16
8 C -0.14 -2.59 4.85 -26.65 -0.13 -2.72 16
9 C 0.02 0.35 1.40 -91.65 -0.13 0.22 16
10 H 0.04 0.87 3.65 -51.93 -0.19 0.69 16
11 C -0.51 -14.23 8.86 -34.44 -0.31 -14.54 16
12 H 0.07 2.14 8.06 -52.48 -0.42 1.71 16
13 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16
14 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16
15 Si 0.87 21.69 26.44 -169.99 -4.49 17.20 16
16 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16
17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
18 H -0.26 -6.14 6.30 56.52 0.36 -5.78 16
19 C -0.14 -2.99 5.18 -26.66 -0.14 -3.13 16
20 C 0.04 0.69 6.25 -3.84 -0.02 0.66 16
21 N -0.68 -10.61 6.66 -108.00 -0.72 -11.33 16
22 O -0.18 -3.43 6.08 5.37 0.03 -3.40 16
23 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16
24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16
25 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16
26 H 0.18 2.35 8.06 -52.49 -0.42 1.93 16
27 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16
29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16
30 H 0.06 1.24 7.08 -51.93 -0.37 0.87 16
31 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16
32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
33 H 0.08 1.51 4.96 -51.93 -0.26 1.25 16
34 H 0.34 4.72 8.86 -39.29 -0.35 4.37 16
LS Contribution 270.71 15.07 4.08 4.08
Total: -1.00 -32.23 270.71 -6.23 -38.46
By element:
Atomic # 1 Polarization: 9.07 SS G_CDS: -4.57 Total: 4.50 kcal
Atomic # 6 Polarization: -12.85 SS G_CDS: -1.20 Total: -14.05 kcal
Atomic # 7 Polarization: -46.72 SS G_CDS: -0.07 Total: -46.79 kcal
Atomic # 8 Polarization: -3.43 SS G_CDS: 0.03 Total: -3.40 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -4.49 Total: 17.20 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -32.23 -6.23 -38.46 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259784162.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.662 kcal
(2) G-P(sol) polarization free energy of solvation -32.232 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.430 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.204 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds