Wall clock time and date at job start Mon Mar 30 2020 03:03:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.30265 * 125.61551 * 2 1
4 4 C 1.34481 * 108.69905 * 180.02562 * 3 2 1
5 5 C 1.34331 * 107.66848 * 0.02562 * 4 3 2
6 6 C 1.50703 * 126.44228 * 179.97438 * 5 4 3
7 7 H 1.08994 * 109.46324 * 10.80308 * 6 5 4
8 8 C 1.53032 * 109.45983 * 250.82762 * 6 5 4
9 9 C 1.53125 * 109.27820 * 299.15884 * 8 6 5
10 10 H 1.08998 * 109.51887 * 62.25873 * 9 8 6
11 11 C 1.50699 * 109.52341 * 182.44237 * 9 8 6
12 12 H 1.08003 * 120.00063 * 27.69755 * 11 9 8
13 13 C 1.37871 * 120.00053 * 207.69697 * 11 9 8
14 14 N 1.31524 * 119.99975 * 186.39829 * 13 11 9
15 15 Si 1.86796 * 120.00236 * 6.40238 * 13 11 9
16 16 H 1.48498 * 109.47151 * 84.80378 * 15 13 11
17 17 H 1.48497 * 109.47162 * 204.80863 * 15 13 11
18 18 H 1.48502 * 109.47073 * 324.80579 * 15 13 11
19 19 C 1.53114 * 109.16237 * 302.35158 * 9 8 6
20 20 C 1.53028 * 109.28206 * 57.65109 * 19 9 8
21 21 N 1.46846 * 109.46043 * 130.77380 * 6 5 4
22 22 O 1.33964 * 125.62507 * 180.33878 * 2 1 3
23 23 H 1.08996 * 109.46621 * 89.97814 * 1 2 3
24 24 H 1.08996 * 109.46710 * 209.97033 * 1 2 3
25 25 H 1.09001 * 109.47032 * 329.97112 * 1 2 3
26 26 H 1.07991 * 126.16176 * 180.02562 * 4 3 2
27 27 H 1.09000 * 109.50391 * 179.22470 * 8 6 5
28 28 H 1.09000 * 109.54235 * 59.12471 * 8 6 5
29 29 H 0.96997 * 119.99954 * 179.97438 * 14 13 11
30 30 H 1.09001 * 109.50122 * 177.59349 * 19 9 8
31 31 H 1.09008 * 109.50310 * 297.70718 * 19 9 8
32 32 H 1.08997 * 109.46879 * 180.80409 * 20 19 9
33 33 H 1.09004 * 109.45465 * 60.82639 * 20 19 9
34 34 H 1.00904 * 110.99873 * 182.37071 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0590 0.0000
4 6 3.5522 0.6677 -0.0006
5 6 3.5699 -0.6755 -0.0015
6 6 4.7938 -1.5547 -0.0029
7 1 5.6779 -0.9469 0.1895
8 6 4.9305 -2.2361 -1.3664
9 6 3.6960 -3.1048 -1.6234
10 1 2.8074 -2.4744 -1.6559
11 6 3.8521 -3.8253 -2.9378
12 1 4.8380 -4.0578 -3.3125
13 6 2.7362 -4.1878 -3.6619
14 7 2.8651 -4.9252 -4.7434
15 14 1.0415 -3.6315 -3.1073
16 1 0.7706 -2.2696 -3.6338
17 1 0.0173 -4.5746 -3.6237
18 1 0.9892 -3.6079 -1.6234
19 6 3.5569 -4.1276 -0.4925
20 6 3.4600 -3.3914 0.8455
21 7 4.6644 -2.5753 1.0450
22 8 2.2873 -1.0889 -0.0064
23 1 -0.3632 0.0004 -1.0277
24 1 -0.3632 -0.8902 0.5134
25 1 -0.3633 0.8897 0.5143
26 1 4.4156 1.3164 -0.0003
27 1 5.8232 -2.8615 -1.3728
28 1 5.0113 -1.4787 -2.1460
29 1 2.0800 -5.1805 -5.2526
30 1 2.6558 -4.7210 -0.6475
31 1 4.4280 -4.7828 -0.4852
32 1 3.3752 -4.1173 1.6542
33 1 2.5810 -2.7468 0.8424
34 1 5.4898 -3.1539 1.0902
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259784162.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:06
Heat of formation + Delta-G solvation = -9.262643 kcal
Electronic energy + Delta-G solvation = -17646.752893 eV
Core-core repulsion = 14965.752934 eV
Total energy + Delta-G solvation = -2680.999959 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-44.32370 -39.87658 -35.68158 -35.22919 -33.47367 -32.73328 -31.68351 -28.35506
-27.24882 -24.09664 -23.66173 -23.16278 -21.86840 -20.83686 -19.11660 -17.84778
-17.52280 -17.17354 -16.12934 -15.93391 -15.18478 -15.09686 -14.84893 -14.62282
-14.39849 -14.11539 -13.86203 -13.50119 -13.33180 -13.09969 -12.79973 -12.75402
-12.31852 -12.10292 -11.88957 -11.57834 -11.49482 -11.29989 -11.06848 -10.69240
-9.69776 -9.22732 -8.35790 -6.37527 0.53694 1.25120 1.26526 1.39145
1.73753 1.80305 2.28206 3.00115 3.20838 3.34845 3.68789 4.06270
4.13272 4.23546 4.25338 4.41736 4.47113 4.55334 4.56399 4.64560
4.77379 4.81956 4.98922 5.02271 5.11748 5.14852 5.23639 5.44443
5.48711 5.62428 5.71038 5.95090 6.25584 6.46965 6.70354 6.79050
7.28173 8.81161
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022313 B = 0.011825 C = 0.009283
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1254.550136 B = 2367.362845 C = 3015.700556
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C 0.158 3.842
3 N -0.506 5.506
4 C -0.052 4.052
5 C -0.028 4.028
6 C 0.173 3.827
7 H 0.143 0.857
8 C -0.132 4.132
9 C 0.013 3.987
10 H 0.027 0.973
11 C -0.514 4.514
12 H 0.032 0.968
13 C 0.013 3.987
14 N -0.949 5.949
15 Si 0.931 3.069
16 H -0.275 1.275
17 H -0.287 1.287
18 H -0.240 1.240
19 C -0.140 4.140
20 C 0.050 3.950
21 N -0.669 5.669
22 O -0.202 6.202
23 H 0.094 0.906
24 H 0.100 0.900
25 H 0.120 0.880
26 H 0.208 0.792
27 H 0.071 0.929
28 H 0.053 0.947
29 H 0.264 0.736
30 H 0.037 0.963
31 H 0.052 0.948
32 H 0.087 0.913
33 H 0.070 0.930
34 H 0.358 0.642
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.402 8.529 13.292 15.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.048 4.048
3 N -0.237 5.237
4 C -0.190 4.190
5 C -0.081 4.081
6 C 0.062 3.938
7 H 0.160 0.840
8 C -0.171 4.171
9 C -0.006 4.006
10 H 0.045 0.955
11 C -0.552 4.552
12 H 0.051 0.949
13 C -0.184 4.184
14 N -0.590 5.590
15 Si 0.756 3.244
16 H -0.201 1.201
17 H -0.213 1.213
18 H -0.163 1.163
19 C -0.179 4.179
20 C -0.079 4.079
21 N -0.300 5.300
22 O -0.089 6.089
23 H 0.112 0.888
24 H 0.119 0.881
25 H 0.138 0.862
26 H 0.225 0.775
27 H 0.090 0.910
28 H 0.072 0.928
29 H 0.073 0.927
30 H 0.055 0.945
31 H 0.071 0.929
32 H 0.105 0.895
33 H 0.088 0.912
34 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -2.045 9.428 13.623 16.693
hybrid contribution -0.121 -1.428 -1.520 2.089
sum -2.166 8.000 12.103 14.669
Atomic orbital electron populations
1.20481 0.79388 1.06519 1.05320 1.27183 0.98100 0.79024 1.00516
1.70387 1.02699 1.30829 1.19776 1.23408 0.95594 0.92908 1.07129
1.23668 0.83530 0.95479 1.05439 1.20355 0.91033 0.91975 0.90394
0.83979 1.22243 0.99294 0.99009 0.96538 1.19145 0.95046 0.93594
0.92811 0.95482 1.21358 0.92961 1.36185 1.04731 0.94947 1.25864
1.03079 0.94572 0.94901 1.70061 1.31291 1.38407 1.19191 0.85970
0.79714 0.78105 0.80639 1.20107 1.21275 1.16315 1.22365 1.00486
0.98865 0.96222 1.22279 0.93800 0.96170 0.95687 1.60834 1.06584
1.17528 1.45026 1.84623 1.17446 1.37478 1.69355 0.88796 0.88146
0.86156 0.77490 0.91046 0.92845 0.92669 0.94460 0.92900 0.89494
0.91182 0.82125
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.31 10.51 71.24 0.75 -0.56 16
2 C 0.16 5.05 8.34 88.34 0.74 5.79 16
3 N -0.51 -16.73 11.30 -303.82 -3.43 -20.16 16
4 C -0.05 -1.58 11.79 83.39 0.98 -0.60 16
5 C -0.03 -0.92 5.46 24.79 0.14 -0.78 16
6 C 0.17 5.04 3.57 44.19 0.16 5.20 16
7 H 0.14 3.11 8.12 -2.39 -0.02 3.09 16
8 C -0.13 -4.87 4.85 30.65 0.15 -4.72 16
9 C 0.01 0.59 1.40 -11.46 -0.02 0.57 16
10 H 0.03 1.29 3.65 -2.39 -0.01 1.28 16
11 C -0.51 -29.23 8.86 25.60 0.23 -29.00 16
12 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16
13 C 0.01 0.75 5.47 84.65 0.46 1.21 16
14 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16
15 Si 0.93 45.14 26.44 68.60 1.81 46.96 16
16 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16
17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16
18 H -0.24 -10.78 6.30 99.48 0.63 -10.15 16
19 C -0.14 -5.60 5.18 30.64 0.16 -5.44 16
20 C 0.05 1.61 6.25 86.32 0.54 2.15 16
21 N -0.67 -18.62 6.66 -495.59 -3.30 -21.92 16
22 O -0.20 -7.24 6.08 -3.70 -0.02 -7.26 16
23 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16
24 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16
25 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16
26 H 0.21 4.74 8.06 -2.92 -0.02 4.71 16
27 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16
28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
29 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16
30 H 0.04 1.60 7.08 -2.39 -0.02 1.59 16
31 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16
32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
33 H 0.07 2.47 4.96 -2.38 -0.01 2.46 16
34 H 0.36 8.50 8.86 -89.69 -0.79 7.71 16
Total: -1.00 -71.01 270.71 -0.12 -71.13
By element:
Atomic # 1 Polarization: 16.84 SS G_CDS: 0.24 Total: 17.07 kcal
Atomic # 6 Polarization: -30.47 SS G_CDS: 4.28 Total: -26.19 kcal
Atomic # 7 Polarization: -95.27 SS G_CDS: -6.43 Total: -101.71 kcal
Atomic # 8 Polarization: -7.24 SS G_CDS: -0.02 Total: -7.26 kcal
Atomic # 14 Polarization: 45.14 SS G_CDS: 1.81 Total: 46.96 kcal
Total: -71.01 -0.12 -71.13 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259784162.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.870 kcal
(2) G-P(sol) polarization free energy of solvation -71.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.133 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds