Wall clock time and date at job start Mon Mar 30 2020 03:20:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52995 * 109.47264 * 2 1
4 4 C 1.53002 * 109.47021 * 120.00195 * 2 1 3
5 5 H 1.08999 * 109.47082 * 180.60559 * 4 2 1
6 6 C 1.50698 * 109.47385 * 60.60394 * 4 2 1
7 7 H 1.08002 * 119.99832 * 245.61866 * 6 4 2
8 8 C 1.37872 * 120.00189 * 65.61748 * 6 4 2
9 9 N 1.31522 * 120.00099 * 355.19072 * 8 6 4
10 10 Si 1.86797 * 120.00251 * 175.19512 * 8 6 4
11 11 H 1.48493 * 109.47285 * 359.97438 * 10 8 6
12 12 H 1.48498 * 109.47143 * 119.99817 * 10 8 6
13 13 H 1.48504 * 109.46811 * 239.99759 * 10 8 6
14 14 N 1.46497 * 109.46912 * 300.60212 * 4 2 1
15 15 C 1.34782 * 120.00166 * 275.00135 * 14 4 2
16 16 O 1.21626 * 119.99860 * 0.02562 * 15 14 4
17 17 C 1.47263 * 120.00242 * 180.02562 * 15 14 4
18 18 C 1.46697 * 126.93775 * 0.30986 * 17 15 14
19 19 C 1.34487 * 106.32486 * 180.13470 * 18 17 15
20 20 N 1.36440 * 108.86028 * 359.60208 * 19 18 17
21 21 H 0.96999 * 124.85132 * 180.28321 * 20 19 18
22 22 C 1.34660 * 110.29969 * 0.26614 * 20 19 18
23 23 H 1.09006 * 109.47453 * 304.95481 * 1 2 3
24 24 H 1.08999 * 109.47478 * 64.95154 * 1 2 3
25 25 H 1.08999 * 109.47645 * 184.95712 * 1 2 3
26 26 H 1.09006 * 109.47075 * 239.99889 * 2 1 3
27 27 H 1.09004 * 109.47095 * 180.02562 * 3 2 1
28 28 H 1.09000 * 109.47496 * 299.99914 * 3 2 1
29 29 H 1.08999 * 109.47460 * 60.00101 * 3 2 1
30 30 H 0.97000 * 120.00254 * 180.02562 * 9 8 6
31 31 H 0.96994 * 120.00360 * 95.00321 * 14 4 2
32 32 H 1.07994 * 126.83914 * 0.02562 * 18 17 15
33 33 H 1.08000 * 125.56453 * 179.86667 * 19 18 17
34 34 H 1.08001 * 125.79914 * 179.97438 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4424 0.0000
4 6 2.0399 -0.7213 1.2492
5 1 3.1298 -0.7119 1.2547
6 6 1.5499 -2.1464 1.2418
7 1 0.8554 -2.4825 1.9975
8 6 1.9880 -3.0210 0.2702
9 7 2.7584 -2.5891 -0.7044
10 14 1.4876 -4.8194 0.3380
11 1 0.6251 -5.0488 1.5248
12 1 0.7380 -5.1714 -0.8947
13 1 2.7023 -5.6677 0.4379
14 7 1.5397 -0.0391 2.4453
15 6 2.2050 1.0217 2.9439
16 8 3.2203 1.4130 2.4005
17 6 1.7025 1.7071 4.1466
18 6 0.5059 1.3630 4.9222
19 6 0.4365 2.2553 5.9260
20 7 1.4965 3.1091 5.8313
21 1 1.6746 3.8415 6.4417
22 6 2.2604 2.7894 4.7693
23 1 -0.3634 0.5888 0.8423
24 1 -0.3634 0.4351 -0.9310
25 1 -0.3634 -1.0238 0.0888
26 1 1.8933 -0.5139 -0.8900
27 1 3.1300 1.4424 -0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6767 1.9563 0.8900
30 1 3.0663 -3.2043 -1.3881
31 1 0.7298 -0.3509 2.8785
32 1 -0.1832 0.5551 4.7253
33 1 -0.3305 2.2878 6.6857
34 1 3.1603 3.3011 4.4616
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259794213.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:07
Heat of formation + Delta-G solvation = -3.090170 kcal
Electronic energy + Delta-G solvation = -16961.561994 eV
Core-core repulsion = 14280.829693 eV
Total energy + Delta-G solvation = -2680.732301 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.82455 -38.47028 -35.40734 -32.26647 -31.87705 -30.48889 -28.88640 -26.90331
-25.82857 -23.31817 -21.75354 -20.46816 -19.11259 -18.55690 -18.20413 -16.42341
-15.15299 -14.91228 -14.58821 -14.11510 -13.88028 -13.63128 -13.07345 -12.78563
-12.41688 -12.38323 -12.20406 -11.76553 -11.28019 -10.94246 -10.93446 -10.81875
-10.23363 -10.00436 -9.83775 -9.36814 -8.90242 -8.80424 -8.62080 -8.45669
-8.16953 -7.53744 -6.03949 -4.10084 2.21204 2.65608 3.29218 3.33847
3.37490 3.40215 4.33813 4.39092 4.63696 5.09674 5.28407 5.30135
5.61793 5.77822 6.06964 6.34648 6.38374 6.42133 6.52194 6.72191
6.92558 6.94942 7.07136 7.10384 7.23370 7.48297 7.57030 7.60140
7.67945 7.74751 7.85746 8.03424 8.27847 8.87721 8.95113 9.39043
9.57988 11.02580
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031562 B = 0.007035 C = 0.006425
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 886.936144 B = 3979.130766 C = 4357.085050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.101 4.101
3 C -0.132 4.132
4 C 0.276 3.724
5 H 0.049 0.951
6 C -0.525 4.525
7 H 0.060 0.940
8 C 0.067 3.933
9 N -0.882 5.882
10 Si 0.896 3.104
11 H -0.273 1.273
12 H -0.284 1.284
13 H -0.284 1.284
14 N -0.701 5.701
15 C 0.574 3.426
16 O -0.563 6.563
17 C -0.217 4.217
18 C -0.170 4.170
19 C -0.027 4.027
20 N -0.560 5.560
21 H 0.413 0.587
22 C 0.057 3.943
23 H 0.030 0.970
24 H 0.023 0.977
25 H 0.060 0.940
26 H 0.098 0.902
27 H 0.050 0.950
28 H 0.021 0.979
29 H 0.039 0.961
30 H 0.262 0.738
31 H 0.387 0.613
32 H 0.144 0.856
33 H 0.164 0.836
34 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.161 8.865 10.682 14.810
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.121 4.121
3 C -0.190 4.190
4 C 0.174 3.826
5 H 0.067 0.933
6 C -0.563 4.563
7 H 0.078 0.922
8 C -0.136 4.136
9 N -0.520 5.520
10 Si 0.724 3.276
11 H -0.198 1.198
12 H -0.210 1.210
13 H -0.210 1.210
14 N -0.347 5.347
15 C 0.360 3.640
16 O -0.445 6.445
17 C -0.227 4.227
18 C -0.194 4.194
19 C -0.155 4.155
20 N -0.155 5.155
21 H 0.248 0.752
22 C -0.078 4.078
23 H 0.049 0.951
24 H 0.042 0.958
25 H 0.079 0.921
26 H 0.116 0.884
27 H 0.069 0.931
28 H 0.040 0.960
29 H 0.058 0.942
30 H 0.072 0.928
31 H 0.219 0.781
32 H 0.161 0.839
33 H 0.181 0.819
34 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -4.343 9.122 10.185 14.346
hybrid contribution -0.641 -0.813 0.474 1.139
sum -4.984 8.309 10.659 14.405
Atomic orbital electron populations
1.21639 0.97547 1.01130 0.97956 1.21501 0.94088 0.93799 1.02720
1.21899 1.00906 0.97775 0.98400 1.18748 0.95748 0.89254 0.78865
0.93267 1.21205 1.27913 0.94352 1.12868 0.92153 1.24858 0.94999
0.98703 0.95050 1.69931 1.34551 1.34848 1.12641 0.86480 0.78288
0.84954 0.77899 1.19784 1.21030 1.20979 1.46227 1.27855 1.30096
1.30504 1.17319 0.83670 0.80534 0.82451 1.90723 1.25648 1.66440
1.61673 1.20840 0.99780 1.01306 1.00823 1.22133 0.99078 1.01430
0.96797 1.21686 0.94672 0.95612 1.03529 1.41575 1.21731 1.27648
1.24548 0.75151 1.21802 0.97798 0.98693 0.89485 0.95085 0.95759
0.92054 0.88371 0.93074 0.96020 0.94167 0.92762 0.78082 0.83862
0.81861 0.80919
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.72 8.80 37.15 0.33 -2.39 16
2 C -0.10 -2.47 2.64 -90.63 -0.24 -2.71 16
3 C -0.13 -3.05 7.72 37.15 0.29 -2.76 16
4 C 0.28 7.04 1.93 -69.08 -0.13 6.91 16
5 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16
6 C -0.52 -13.87 7.35 -34.44 -0.25 -14.12 16
7 H 0.06 1.54 7.72 -52.49 -0.41 1.14 16
8 C 0.07 1.80 5.36 -17.82 -0.10 1.71 16
9 N -0.88 -24.95 11.55 55.43 0.64 -24.31 16
10 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16
11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
14 N -0.70 -15.28 4.27 -56.06 -0.24 -15.51 16
15 C 0.57 12.31 6.19 -12.59 -0.08 12.23 16
16 O -0.56 -13.85 14.03 5.25 0.07 -13.77 16
17 C -0.22 -3.73 6.29 -103.35 -0.65 -4.38 16
18 C -0.17 -2.38 10.56 -37.49 -0.40 -2.78 16
19 C -0.03 -0.30 11.89 -16.83 -0.20 -0.50 16
20 N -0.56 -5.71 5.90 -12.85 -0.08 -5.79 16
21 H 0.41 2.56 8.96 -40.82 -0.37 2.19 16
22 C 0.06 0.80 11.69 -16.84 -0.20 0.60 16
23 H 0.03 0.62 7.75 -51.93 -0.40 0.22 16
24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16
25 H 0.06 1.38 7.07 -51.93 -0.37 1.01 16
26 H 0.10 2.68 6.33 -51.93 -0.33 2.35 16
27 H 0.05 1.25 7.57 -51.93 -0.39 0.86 16
28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.04 0.91 5.76 -51.93 -0.30 0.61 16
30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16
31 H 0.39 7.57 7.65 -40.82 -0.31 7.26 16
32 H 0.14 1.83 7.70 -52.49 -0.40 1.43 16
33 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16
34 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16
LS Contribution 281.82 15.07 4.25 4.25
Total: -1.00 -31.77 281.82 -6.50 -38.27
By element:
Atomic # 1 Polarization: 13.73 SS G_CDS: -4.50 Total: 9.24 kcal
Atomic # 6 Polarization: -6.55 SS G_CDS: -1.63 Total: -8.18 kcal
Atomic # 7 Polarization: -45.94 SS G_CDS: 0.33 Total: -45.61 kcal
Atomic # 8 Polarization: -13.85 SS G_CDS: 0.07 Total: -13.77 kcal
Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -31.77 -6.50 -38.27 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259794213.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.185 kcal
(2) G-P(sol) polarization free energy of solvation -31.775 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.410 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.090 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds