Wall clock time and date at job start Mon Mar 30 2020 03:20:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52995 * 109.47264 * 2 1
4 4 C 1.53002 * 109.47021 * 120.00195 * 2 1 3
5 5 H 1.08999 * 109.47082 * 180.60559 * 4 2 1
6 6 C 1.50698 * 109.47385 * 60.60394 * 4 2 1
7 7 H 1.08002 * 119.99832 * 245.61866 * 6 4 2
8 8 C 1.37872 * 120.00189 * 65.61748 * 6 4 2
9 9 N 1.31522 * 120.00099 * 355.19072 * 8 6 4
10 10 Si 1.86797 * 120.00251 * 175.19512 * 8 6 4
11 11 H 1.48493 * 109.47285 * 359.97438 * 10 8 6
12 12 H 1.48498 * 109.47143 * 119.99817 * 10 8 6
13 13 H 1.48504 * 109.46811 * 239.99759 * 10 8 6
14 14 N 1.46497 * 109.46912 * 300.60212 * 4 2 1
15 15 C 1.34782 * 120.00166 * 275.00135 * 14 4 2
16 16 O 1.21626 * 119.99860 * 0.02562 * 15 14 4
17 17 C 1.47263 * 120.00242 * 180.02562 * 15 14 4
18 18 C 1.46697 * 126.93775 * 0.30986 * 17 15 14
19 19 C 1.34487 * 106.32486 * 180.13470 * 18 17 15
20 20 N 1.36440 * 108.86028 * 359.60208 * 19 18 17
21 21 H 0.96999 * 124.85132 * 180.28321 * 20 19 18
22 22 C 1.34660 * 110.29969 * 0.26614 * 20 19 18
23 23 H 1.09006 * 109.47453 * 304.95481 * 1 2 3
24 24 H 1.08999 * 109.47478 * 64.95154 * 1 2 3
25 25 H 1.08999 * 109.47645 * 184.95712 * 1 2 3
26 26 H 1.09006 * 109.47075 * 239.99889 * 2 1 3
27 27 H 1.09004 * 109.47095 * 180.02562 * 3 2 1
28 28 H 1.09000 * 109.47496 * 299.99914 * 3 2 1
29 29 H 1.08999 * 109.47460 * 60.00101 * 3 2 1
30 30 H 0.97000 * 120.00254 * 180.02562 * 9 8 6
31 31 H 0.96994 * 120.00360 * 95.00321 * 14 4 2
32 32 H 1.07994 * 126.83914 * 0.02562 * 18 17 15
33 33 H 1.08000 * 125.56453 * 179.86667 * 19 18 17
34 34 H 1.08001 * 125.79914 * 179.97438 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4424 0.0000
4 6 2.0399 -0.7213 1.2492
5 1 3.1298 -0.7119 1.2547
6 6 1.5499 -2.1464 1.2418
7 1 0.8554 -2.4825 1.9975
8 6 1.9880 -3.0210 0.2702
9 7 2.7584 -2.5891 -0.7044
10 14 1.4876 -4.8194 0.3380
11 1 0.6251 -5.0488 1.5248
12 1 0.7380 -5.1714 -0.8947
13 1 2.7023 -5.6677 0.4379
14 7 1.5397 -0.0391 2.4453
15 6 2.2050 1.0217 2.9439
16 8 3.2203 1.4130 2.4005
17 6 1.7025 1.7071 4.1466
18 6 0.5059 1.3630 4.9222
19 6 0.4365 2.2553 5.9260
20 7 1.4965 3.1091 5.8313
21 1 1.6746 3.8415 6.4417
22 6 2.2604 2.7894 4.7693
23 1 -0.3634 0.5888 0.8423
24 1 -0.3634 0.4351 -0.9310
25 1 -0.3634 -1.0238 0.0888
26 1 1.8933 -0.5139 -0.8900
27 1 3.1300 1.4424 -0.0005
28 1 1.6767 1.9563 -0.8900
29 1 1.6767 1.9563 0.8900
30 1 3.0663 -3.2043 -1.3881
31 1 0.7298 -0.3509 2.8785
32 1 -0.1832 0.5551 4.7253
33 1 -0.3305 2.2878 6.6857
34 1 3.1603 3.3011 4.4616
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259794213.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:20:07
Heat of formation + Delta-G solvation = -24.948336 kcal
Electronic energy + Delta-G solvation = -16962.509836 eV
Core-core repulsion = 14280.829693 eV
Total energy + Delta-G solvation = -2681.680142 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.88522 -40.18023 -37.29907 -34.21485 -33.71885 -31.67943 -29.94810 -28.86732
-27.66050 -25.16629 -23.36611 -21.44817 -20.69041 -20.10396 -19.60932 -18.24994
-17.00075 -16.64454 -16.28140 -15.84915 -15.10720 -14.76026 -14.54573 -14.36237
-14.09168 -14.03539 -13.78814 -13.24369 -12.98237 -12.81027 -12.75060 -12.67990
-12.16278 -11.88621 -11.74843 -11.31487 -10.88275 -10.62430 -10.48940 -9.74486
-9.41829 -9.15185 -8.10820 -6.24608 0.97203 1.45092 1.46826 1.58209
1.66311 2.37646 2.47724 2.84285 3.02644 3.19878 4.17923 4.35262
4.47269 4.49706 4.53244 4.61319 4.64721 4.92736 5.06401 5.09669
5.16665 5.24067 5.33389 5.48881 5.63599 5.71970 5.80240 5.84962
5.87071 5.99440 6.13392 6.25420 6.78746 6.83179 7.19655 7.41274
7.77348 8.96023
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031562 B = 0.007035 C = 0.006425
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 886.936144 B = 3979.130766 C = 4357.085050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.100 4.100
3 C -0.118 4.118
4 C 0.285 3.715
5 H -0.009 1.009
6 C -0.533 4.533
7 H 0.069 0.931
8 C 0.016 3.984
9 N -0.916 5.916
10 Si 0.964 3.036
11 H -0.261 1.261
12 H -0.279 1.279
13 H -0.286 1.286
14 N -0.698 5.698
15 C 0.568 3.432
16 O -0.607 6.607
17 C -0.264 4.264
18 C -0.196 4.196
19 C 0.001 3.999
20 N -0.536 5.536
21 H 0.436 0.564
22 C 0.066 3.934
23 H 0.046 0.954
24 H 0.041 0.959
25 H 0.051 0.949
26 H 0.066 0.934
27 H 0.023 0.977
28 H 0.043 0.957
29 H 0.041 0.959
30 H 0.263 0.737
31 H 0.399 0.601
32 H 0.149 0.851
33 H 0.211 0.789
34 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.397 9.510 12.886 17.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C -0.121 4.121
3 C -0.175 4.175
4 C 0.182 3.818
5 H 0.009 0.991
6 C -0.572 4.572
7 H 0.087 0.913
8 C -0.183 4.183
9 N -0.555 5.555
10 Si 0.790 3.210
11 H -0.185 1.185
12 H -0.205 1.205
13 H -0.212 1.212
14 N -0.345 5.345
15 C 0.358 3.642
16 O -0.492 6.492
17 C -0.275 4.275
18 C -0.219 4.219
19 C -0.127 4.127
20 N -0.133 5.133
21 H 0.276 0.724
22 C -0.072 4.072
23 H 0.065 0.935
24 H 0.060 0.940
25 H 0.070 0.930
26 H 0.084 0.916
27 H 0.042 0.958
28 H 0.062 0.938
29 H 0.060 0.940
30 H 0.072 0.928
31 H 0.233 0.767
32 H 0.167 0.833
33 H 0.227 0.773
34 H 0.197 0.803
Dipole moment (debyes) X Y Z Total
from point charges -6.615 9.794 12.447 17.165
hybrid contribution 0.094 -0.922 -0.123 0.935
sum -6.521 8.872 12.324 16.527
Atomic orbital electron populations
1.21494 0.94990 1.00993 0.99584 1.21373 0.96166 0.93848 1.00669
1.21726 0.99044 0.97308 0.99435 1.18333 0.92479 0.90029 0.81007
0.99064 1.21475 1.27878 0.94903 1.12898 0.91315 1.25708 0.94974
1.03016 0.94639 1.70090 1.35739 1.36279 1.13387 0.85411 0.77852
0.79429 0.78339 1.18458 1.20500 1.21241 1.45997 1.28407 1.30360
1.29754 1.17995 0.82863 0.79978 0.83366 1.90687 1.27530 1.67564
1.63370 1.20606 1.02661 1.03460 1.00746 1.22294 0.98626 1.03209
0.97807 1.22307 0.94432 0.93361 1.02582 1.41585 1.20582 1.27707
1.23392 0.72361 1.21863 0.97922 0.97549 0.89854 0.93490 0.93981
0.93031 0.91617 0.95824 0.93823 0.93972 0.92812 0.76705 0.83304
0.77282 0.80306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -4.84 8.80 71.98 0.63 -4.21 16
2 C -0.10 -5.05 2.64 -10.80 -0.03 -5.08 16
3 C -0.12 -5.58 7.72 71.98 0.56 -5.02 16
4 C 0.29 15.19 1.93 44.25 0.09 15.27 16
5 H -0.01 -0.55 7.58 -2.39 -0.02 -0.57 16
6 C -0.53 -28.74 7.35 25.60 0.19 -28.55 16
7 H 0.07 3.50 7.72 -2.91 -0.02 3.48 16
8 C 0.02 0.90 5.36 84.65 0.45 1.36 16
9 N -0.92 -53.71 11.55 21.45 0.25 -53.46 16
10 Si 0.96 43.02 29.54 68.60 2.03 45.05 16
11 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16
12 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16
13 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16
14 N -0.70 -31.25 4.27 -449.52 -1.92 -33.17 16
15 C 0.57 25.12 6.19 86.62 0.54 25.65 16
16 O -0.61 -31.39 14.03 -4.11 -0.06 -31.44 16
17 C -0.26 -8.89 6.29 -19.04 -0.12 -9.01 16
18 C -0.20 -5.02 10.56 23.62 0.25 -4.77 16
19 C 0.00 0.03 11.89 83.12 0.99 1.01 16
20 N -0.54 -8.83 5.90 -194.56 -1.15 -9.98 16
21 H 0.44 3.37 8.96 -92.71 -0.83 2.54 16
22 C 0.07 1.72 11.69 83.91 0.98 2.70 16
23 H 0.05 1.83 7.75 -2.38 -0.02 1.81 16
24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16
25 H 0.05 2.28 7.07 -2.39 -0.02 2.27 16
26 H 0.07 3.74 6.33 -2.38 -0.02 3.73 16
27 H 0.02 1.20 7.57 -2.39 -0.02 1.18 16
28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16
29 H 0.04 1.95 5.76 -2.39 -0.01 1.93 16
30 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16
31 H 0.40 15.69 7.65 -92.71 -0.71 14.98 16
32 H 0.15 3.51 7.70 -2.91 -0.02 3.49 16
33 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16
34 H 0.18 4.34 8.06 -2.91 -0.02 4.32 16
Total: -1.00 -72.74 281.82 3.25 -69.48
By element:
Atomic # 1 Polarization: 24.59 SS G_CDS: -0.42 Total: 24.17 kcal
Atomic # 6 Polarization: -15.17 SS G_CDS: 4.52 Total: -10.64 kcal
Atomic # 7 Polarization: -93.79 SS G_CDS: -2.82 Total: -96.61 kcal
Atomic # 8 Polarization: -31.39 SS G_CDS: -0.06 Total: -31.44 kcal
Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal
Total: -72.74 3.25 -69.48 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259794213.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.535 kcal
(2) G-P(sol) polarization free energy of solvation -72.736 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.484 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds