Wall clock time and date at job start Mon Mar 30 2020 02:58:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.34323 * 126.16897 * 2 1
4 4 O 1.34747 * 107.11576 * 179.97438 * 3 2 1
5 5 C 1.33966 * 107.75667 * 0.02562 * 4 3 2
6 6 C 1.50700 * 125.62418 * 179.97438 * 5 4 3
7 7 H 1.08996 * 109.52628 * 179.97438 * 6 5 4
8 8 C 1.53038 * 109.50040 * 300.02644 * 6 5 4
9 9 C 1.53034 * 109.53895 * 181.31201 * 8 6 5
10 10 C 1.53186 * 109.31758 * 298.63320 * 9 8 6
11 11 N 1.46923 * 108.77221 * 54.63176 * 10 9 8
12 12 C 1.36944 * 120.62757 * 126.41396 * 11 10 9
13 13 H 1.07998 * 119.99976 * 207.66673 * 12 11 10
14 14 C 1.38812 * 119.99668 * 27.67469 * 12 11 10
15 15 N 1.31617 * 120.00378 * 17.36465 * 14 12 11
16 16 Si 1.86807 * 119.99569 * 197.36515 * 14 12 11
17 17 H 1.48498 * 109.47304 * 359.97438 * 16 14 12
18 18 H 1.48496 * 109.46961 * 120.00130 * 16 14 12
19 19 H 1.48508 * 109.46828 * 239.99645 * 16 14 12
20 20 C 1.46924 * 118.74467 * 306.39700 * 11 10 9
21 21 N 1.30258 * 108.75893 * 0.25881 * 5 4 3
22 22 H 1.09003 * 109.47179 * 90.02143 * 1 2 3
23 23 H 1.08995 * 109.47291 * 210.01872 * 1 2 3
24 24 H 1.08994 * 109.46646 * 330.02538 * 1 2 3
25 25 H 1.07997 * 126.44025 * 359.97438 * 3 2 1
26 26 H 1.09005 * 109.45642 * 301.33818 * 8 6 5
27 27 H 1.09002 * 109.45972 * 61.30017 * 8 6 5
28 28 H 1.09002 * 109.49852 * 58.58870 * 9 8 6
29 29 H 1.09011 * 109.49750 * 178.64713 * 9 8 6
30 30 H 1.09000 * 109.59197 * 174.42538 * 10 9 8
31 31 H 1.09000 * 109.58851 * 294.84969 * 10 9 8
32 32 H 0.96999 * 120.00020 * 180.02562 * 15 14 12
33 33 H 1.09002 * 109.58119 * 293.81921 * 20 11 10
34 34 H 1.08994 * 109.58942 * 173.39662 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2998 1.0844 0.0000
4 8 3.5734 0.6445 0.0006
5 6 3.5431 -0.6948 0.0003
6 6 4.7479 -1.6001 0.0003
7 1 4.4221 -2.6402 0.0005
8 6 5.5900 -1.3296 -1.2486
9 6 6.7964 -2.2711 -1.2662
10 6 7.6638 -2.0064 -0.0317
11 7 6.8252 -2.1225 1.1691
12 6 7.1863 -2.9555 2.1944
13 1 6.4289 -3.3861 2.8325
14 6 8.5258 -3.2461 2.4134
15 7 9.4597 -2.4839 1.8849
16 14 9.0031 -4.7191 3.4585
17 1 7.7761 -5.4079 3.9330
18 1 9.8166 -5.6593 2.6465
19 1 9.7962 -4.2605 4.6273
20 6 5.5921 -1.3278 1.2493
21 7 2.3006 -1.0857 -0.0059
22 1 -0.3634 -0.0004 -1.0277
23 1 -0.3633 -0.8898 0.5141
24 1 -0.3632 0.8902 0.5134
25 1 1.9770 2.1150 -0.0004
26 1 4.9841 -1.4989 -2.1388
27 1 5.9363 -0.2962 -1.2363
28 1 6.4512 -3.3050 -1.2535
29 1 7.3827 -2.0944 -2.1681
30 1 8.4694 -2.7393 0.0129
31 1 8.0835 -1.0021 -0.0885
32 1 10.3957 -2.6873 2.0377
33 1 5.8429 -0.2681 1.2969
34 1 5.0308 -1.6129 2.1390
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259891736.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:58
Heat of formation + Delta-G solvation = 30.987351 kcal
Electronic energy + Delta-G solvation = -16809.912187 eV
Core-core repulsion = 14130.657598 eV
Total energy + Delta-G solvation = -2679.254589 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-43.09899 -37.64380 -34.92684 -33.54984 -31.71841 -30.51969 -29.73740 -26.87139
-25.30364 -23.34920 -22.08819 -21.35796 -20.59898 -18.94277 -17.01246 -16.56647
-16.34198 -14.98032 -14.62224 -14.25171 -13.93631 -13.49089 -13.33946 -13.20522
-12.94148 -12.61204 -12.39958 -12.13554 -11.63583 -11.09643 -10.83877 -10.80456
-10.62986 -10.31276 -10.28945 -10.21868 -9.96599 -9.74582 -9.53185 -8.59322
-8.41887 -6.73100 -5.81501 -3.24512 1.68325 2.85520 3.04383 3.37288
3.45352 3.48069 4.15204 4.50385 4.90729 5.00526 5.28095 5.36689
5.48008 5.51066 5.51525 5.61636 5.68701 5.76296 6.00041 6.09216
6.14790 6.17998 6.29144 6.52042 6.56489 6.61607 6.69005 6.76839
6.85714 7.35770 7.64125 7.79061 8.01843 8.41091 9.17821 9.79806
10.35830 11.27140
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.040950 B = 0.005987 C = 0.005600
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 683.593858 B = 4675.988392 C = 4998.440118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C -0.020 4.020
3 C -0.096 4.096
4 O -0.197 6.197
5 C 0.227 3.773
6 C -0.014 4.014
7 H 0.109 0.891
8 C -0.102 4.102
9 C -0.141 4.141
10 C 0.166 3.834
11 N -0.587 5.587
12 C -0.255 4.255
13 H 0.068 0.932
14 C 0.004 3.996
15 N -0.901 5.901
16 Si 0.903 3.097
17 H -0.277 1.277
18 H -0.288 1.288
19 H -0.290 1.290
20 C 0.155 3.845
21 N -0.495 5.495
22 H 0.071 0.929
23 H 0.074 0.926
24 H 0.071 0.929
25 H 0.209 0.791
26 H 0.050 0.950
27 H 0.062 0.938
28 H 0.058 0.942
29 H 0.055 0.945
30 H 0.090 0.910
31 H 0.021 0.979
32 H 0.254 0.746
33 H 0.026 0.974
34 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.142 5.518 -5.763 14.529
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.140 4.140
3 C -0.167 4.167
4 O -0.083 6.083
5 C 0.019 3.981
6 C -0.036 4.036
7 H 0.127 0.873
8 C -0.141 4.141
9 C -0.180 4.180
10 C 0.041 3.959
11 N -0.309 5.309
12 C -0.385 4.385
13 H 0.086 0.914
14 C -0.195 4.195
15 N -0.545 5.545
16 Si 0.733 3.267
17 H -0.202 1.202
18 H -0.215 1.215
19 H -0.217 1.217
20 C 0.027 3.973
21 N -0.224 5.224
22 H 0.089 0.911
23 H 0.093 0.907
24 H 0.090 0.910
25 H 0.225 0.775
26 H 0.069 0.931
27 H 0.080 0.920
28 H 0.077 0.923
29 H 0.074 0.926
30 H 0.109 0.891
31 H 0.039 0.961
32 H 0.064 0.936
33 H 0.044 0.956
34 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -12.101 4.888 -5.723 14.251
hybrid contribution 0.353 0.172 0.497 0.634
sum -11.748 5.060 -5.226 13.818
Atomic orbital electron populations
1.20054 0.86949 1.03081 1.02509 1.21796 0.97966 0.88614 1.05610
1.24649 0.80729 1.00716 1.10571 1.84473 1.30080 1.24379 1.69382
1.26728 0.95270 0.79039 0.97041 1.20626 0.87104 0.95626 1.00211
0.87280 1.21470 0.96877 1.00668 0.95057 1.22192 0.96657 0.98754
1.00423 1.20873 0.92556 1.00148 0.82348 1.44043 1.21807 1.48237
1.16843 1.19249 0.90970 1.19693 1.08556 0.91411 1.25034 0.96145
0.99040 0.99232 1.70053 0.99589 1.36888 1.47999 0.86212 0.78277
0.82594 0.79634 1.20163 1.21470 1.21706 1.20871 0.88467 0.94930
0.93021 1.70416 1.00652 1.31149 1.20201 0.91051 0.90747 0.91009
0.77461 0.93110 0.91971 0.92280 0.92593 0.89138 0.96110 0.93612
0.95616 0.92243
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.69 10.43 36.01 0.38 -0.31 16
2 C -0.02 -0.29 7.11 -82.81 -0.59 -0.88 16
3 C -0.10 -1.29 12.08 29.35 0.35 -0.94 16
4 O -0.20 -3.32 10.77 5.38 0.06 -3.26 16
5 C 0.23 4.07 6.86 -12.95 -0.09 3.98 16
6 C -0.01 -0.26 2.81 -91.65 -0.26 -0.52 16
7 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16
8 C -0.10 -1.79 5.15 -26.69 -0.14 -1.92 16
9 C -0.14 -2.65 6.08 -26.62 -0.16 -2.81 16
10 C 0.17 3.91 5.31 -3.72 -0.02 3.89 16
11 N -0.59 -14.69 2.99 -172.33 -0.52 -15.20 16
12 C -0.26 -6.98 9.59 -15.06 -0.14 -7.13 16
13 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16
14 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16
15 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16
16 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16
17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16
20 C 0.16 3.35 5.78 -3.71 -0.02 3.33 16
21 N -0.49 -8.80 11.29 -7.36 -0.08 -8.88 16
22 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
25 H 0.21 1.81 8.06 -52.49 -0.42 1.39 16
26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
27 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
29 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16
30 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16
31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16
33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
34 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16
LS Contribution 282.90 15.07 4.26 4.26
Total: -1.00 -30.63 282.90 -6.39 -37.02
By element:
Atomic # 1 Polarization: 3.03 SS G_CDS: -4.92 Total: -1.89 kcal
Atomic # 6 Polarization: -2.52 SS G_CDS: -0.77 Total: -3.29 kcal
Atomic # 7 Polarization: -49.39 SS G_CDS: 0.02 Total: -49.37 kcal
Atomic # 8 Polarization: -3.32 SS G_CDS: 0.06 Total: -3.26 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -30.63 -6.39 -37.02 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259891736.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.003 kcal
(2) G-P(sol) polarization free energy of solvation -30.629 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.374 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds