Wall clock time and date at job start Mon Mar 30 2020 02:58:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 C 1.34323 * 126.16897 * 2 1
4 4 O 1.34747 * 107.11576 * 179.97438 * 3 2 1
5 5 C 1.33966 * 107.75667 * 0.02562 * 4 3 2
6 6 C 1.50700 * 125.62418 * 179.97438 * 5 4 3
7 7 H 1.08996 * 109.52628 * 179.97438 * 6 5 4
8 8 C 1.53038 * 109.50040 * 300.02644 * 6 5 4
9 9 C 1.53034 * 109.53895 * 181.31201 * 8 6 5
10 10 C 1.53186 * 109.31758 * 298.63320 * 9 8 6
11 11 N 1.46923 * 108.77221 * 54.63176 * 10 9 8
12 12 C 1.36944 * 120.62757 * 126.41396 * 11 10 9
13 13 H 1.07998 * 119.99976 * 207.66673 * 12 11 10
14 14 C 1.38812 * 119.99668 * 27.67469 * 12 11 10
15 15 N 1.31617 * 120.00378 * 17.36465 * 14 12 11
16 16 Si 1.86807 * 119.99569 * 197.36515 * 14 12 11
17 17 H 1.48498 * 109.47304 * 359.97438 * 16 14 12
18 18 H 1.48496 * 109.46961 * 120.00130 * 16 14 12
19 19 H 1.48508 * 109.46828 * 239.99645 * 16 14 12
20 20 C 1.46924 * 118.74467 * 306.39700 * 11 10 9
21 21 N 1.30258 * 108.75893 * 0.25881 * 5 4 3
22 22 H 1.09003 * 109.47179 * 90.02143 * 1 2 3
23 23 H 1.08995 * 109.47291 * 210.01872 * 1 2 3
24 24 H 1.08994 * 109.46646 * 330.02538 * 1 2 3
25 25 H 1.07997 * 126.44025 * 359.97438 * 3 2 1
26 26 H 1.09005 * 109.45642 * 301.33818 * 8 6 5
27 27 H 1.09002 * 109.45972 * 61.30017 * 8 6 5
28 28 H 1.09002 * 109.49852 * 58.58870 * 9 8 6
29 29 H 1.09011 * 109.49750 * 178.64713 * 9 8 6
30 30 H 1.09000 * 109.59197 * 174.42538 * 10 9 8
31 31 H 1.09000 * 109.58851 * 294.84969 * 10 9 8
32 32 H 0.96999 * 120.00020 * 180.02562 * 15 14 12
33 33 H 1.09002 * 109.58119 * 293.81921 * 20 11 10
34 34 H 1.08994 * 109.58942 * 173.39662 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2998 1.0844 0.0000
4 8 3.5734 0.6445 0.0006
5 6 3.5431 -0.6948 0.0003
6 6 4.7479 -1.6001 0.0003
7 1 4.4221 -2.6402 0.0005
8 6 5.5900 -1.3296 -1.2486
9 6 6.7964 -2.2711 -1.2662
10 6 7.6638 -2.0064 -0.0317
11 7 6.8252 -2.1225 1.1691
12 6 7.1863 -2.9555 2.1944
13 1 6.4289 -3.3861 2.8325
14 6 8.5258 -3.2461 2.4134
15 7 9.4597 -2.4839 1.8849
16 14 9.0031 -4.7191 3.4585
17 1 7.7761 -5.4079 3.9330
18 1 9.8166 -5.6593 2.6465
19 1 9.7962 -4.2605 4.6273
20 6 5.5921 -1.3278 1.2493
21 7 2.3006 -1.0857 -0.0059
22 1 -0.3634 -0.0004 -1.0277
23 1 -0.3633 -0.8898 0.5141
24 1 -0.3632 0.8902 0.5134
25 1 1.9770 2.1150 -0.0004
26 1 4.9841 -1.4989 -2.1388
27 1 5.9363 -0.2962 -1.2363
28 1 6.4512 -3.3050 -1.2535
29 1 7.3827 -2.0944 -2.1681
30 1 8.4694 -2.7393 0.0129
31 1 8.0835 -1.0021 -0.0885
32 1 10.3957 -2.6873 2.0377
33 1 5.8429 -0.2681 1.2969
34 1 5.0308 -1.6129 2.1390
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259891736.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:57
Heat of formation + Delta-G solvation = 10.282075 kcal
Electronic energy + Delta-G solvation = -16810.810035 eV
Core-core repulsion = 14130.657598 eV
Total energy + Delta-G solvation = -2680.152437 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-44.30913 -39.33633 -36.10777 -35.36655 -33.14611 -32.38127 -31.13294 -27.92110
-27.26319 -24.86280 -23.86198 -22.56391 -22.08211 -20.51216 -18.75486 -17.96124
-17.59804 -16.87949 -16.03569 -15.74075 -15.49086 -15.17632 -14.84110 -14.32361
-14.27164 -14.09458 -13.87891 -13.31200 -13.03098 -12.96479 -12.69541 -12.45722
-12.09679 -11.98311 -11.94711 -11.72953 -11.54260 -11.48741 -11.25863 -10.57381
-9.64636 -8.74209 -7.90169 -5.36550 0.50711 1.47016 1.49049 1.59865
1.66312 1.86596 2.49674 2.96614 3.25603 3.68426 3.83415 3.93803
3.99240 4.07379 4.25405 4.41528 4.51333 4.69589 4.71447 4.80690
4.86548 4.94735 4.96832 5.01205 5.08282 5.14094 5.17259 5.22602
5.45388 5.51524 5.63930 5.74618 6.35844 6.80914 7.11610 7.79171
8.31442 9.16609
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.040950 B = 0.005987 C = 0.005600
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 683.593858 B = 4675.988392 C = 4998.440118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 C -0.042 4.042
3 C -0.082 4.082
4 O -0.211 6.211
5 C 0.202 3.798
6 C 0.000 4.000
7 H 0.102 0.898
8 C -0.094 4.094
9 C -0.128 4.128
10 C 0.171 3.829
11 N -0.605 5.605
12 C -0.269 4.269
13 H 0.065 0.935
14 C -0.045 4.045
15 N -0.932 5.932
16 Si 0.968 3.032
17 H -0.268 1.268
18 H -0.286 1.286
19 H -0.291 1.291
20 C 0.159 3.841
21 N -0.514 5.514
22 H 0.085 0.915
23 H 0.066 0.934
24 H 0.101 0.899
25 H 0.256 0.744
26 H 0.076 0.924
27 H 0.061 0.939
28 H 0.058 0.942
29 H 0.082 0.918
30 H 0.060 0.940
31 H 0.001 0.999
32 H 0.252 0.748
33 H 0.018 0.982
34 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.988 6.088 -6.451 16.564
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.161 4.161
3 C -0.151 4.151
4 O -0.097 6.097
5 C -0.005 4.005
6 C -0.021 4.021
7 H 0.120 0.880
8 C -0.132 4.132
9 C -0.167 4.167
10 C 0.046 3.954
11 N -0.328 5.328
12 C -0.399 4.399
13 H 0.083 0.917
14 C -0.240 4.240
15 N -0.577 5.577
16 Si 0.796 3.204
17 H -0.193 1.193
18 H -0.213 1.213
19 H -0.218 1.218
20 C 0.032 3.968
21 N -0.245 5.245
22 H 0.104 0.896
23 H 0.085 0.915
24 H 0.120 0.880
25 H 0.272 0.728
26 H 0.094 0.906
27 H 0.080 0.920
28 H 0.077 0.923
29 H 0.100 0.900
30 H 0.078 0.922
31 H 0.019 0.981
32 H 0.061 0.939
33 H 0.036 0.964
34 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -13.973 5.468 -6.422 16.322
hybrid contribution 0.824 0.102 0.731 1.106
sum -13.149 5.570 -5.692 15.373
Atomic orbital electron populations
1.20202 0.84005 1.04251 1.03790 1.22521 0.99860 0.87923 1.05799
1.25630 0.79174 1.02553 1.07772 1.84462 1.31990 1.23855 1.69419
1.26297 0.95017 0.79546 0.99662 1.20229 0.87299 0.95641 0.98940
0.88028 1.21406 0.96236 1.00094 0.95476 1.22022 0.96710 0.99124
0.98879 1.20731 0.92648 0.97975 0.84094 1.44268 1.22905 1.48633
1.16999 1.19528 0.91208 1.20059 1.09065 0.91691 1.25773 0.96042
1.01436 1.00788 1.70192 0.99632 1.38384 1.49509 0.85204 0.77937
0.79383 0.77877 1.19275 1.21263 1.21823 1.20849 0.87587 0.93844
0.94540 1.70383 1.01026 1.32999 1.20044 0.89631 0.91454 0.87999
0.72811 0.90580 0.92029 0.92317 0.89996 0.92192 0.98103 0.93890
0.96427 0.93165
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.11 10.43 71.24 0.74 -0.36 16
2 C -0.04 -1.10 7.11 41.26 0.29 -0.81 16
3 C -0.08 -1.95 12.08 66.93 0.81 -1.14 16
4 O -0.21 -6.76 10.77 -3.67 -0.04 -6.80 16
5 C 0.20 7.05 6.86 88.34 0.61 7.66 16
6 C 0.00 0.01 2.81 -11.46 -0.03 -0.03 16
7 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16
8 C -0.09 -3.15 5.15 30.62 0.16 -3.00 16
9 C -0.13 -4.73 6.08 30.67 0.19 -4.54 16
10 C 0.17 8.22 5.31 86.36 0.46 8.68 16
11 N -0.61 -31.00 2.99 -699.12 -2.09 -33.09 16
12 C -0.27 -15.01 9.59 84.03 0.81 -14.20 16
13 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16
14 C -0.04 -2.49 4.91 84.86 0.42 -2.08 16
15 N -0.93 -54.93 11.19 21.65 0.24 -54.69 16
16 Si 0.97 44.94 29.59 68.60 2.03 46.97 16
17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16
18 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16
19 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16
20 C 0.16 7.00 5.78 86.36 0.50 7.50 16
21 N -0.51 -17.62 11.29 -291.98 -3.30 -20.92 16
22 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16
24 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16
25 H 0.26 3.20 8.06 -2.91 -0.02 3.18 16
26 H 0.08 2.21 8.14 -2.38 -0.02 2.20 16
27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
28 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
29 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16
30 H 0.06 3.24 6.04 -2.39 -0.01 3.23 16
31 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16
32 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16
33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16
34 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16
Total: -1.00 -67.30 282.90 2.86 -64.45
By element:
Atomic # 1 Polarization: 5.33 SS G_CDS: 1.08 Total: 6.40 kcal
Atomic # 6 Polarization: -7.26 SS G_CDS: 4.94 Total: -2.32 kcal
Atomic # 7 Polarization: -103.55 SS G_CDS: -5.15 Total: -108.70 kcal
Atomic # 8 Polarization: -6.76 SS G_CDS: -0.04 Total: -6.80 kcal
Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal
Total: -67.30 2.86 -64.45 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259891736.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.728 kcal
(2) G-P(sol) polarization free energy of solvation -67.305 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.423 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.282 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds