Wall clock time and date at job start Mon Mar 30 2020 03:00:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.34330 * 126.15974 * 2 1
4 4 O 1.34752 * 107.10966 * 179.97438 * 3 2 1
5 5 C 1.33974 * 107.75710 * 0.02562 * 4 3 2
6 6 C 1.50698 * 125.61897 * 180.02562 * 5 4 3
7 7 N 1.46898 * 109.46707 * 270.02030 * 6 5 4
8 8 C 1.47843 * 111.00476 * 68.29270 * 7 6 5
9 9 C 1.54906 * 104.80051 * 146.36379 * 8 7 6
10 10 C 1.55140 * 101.64906 * 322.92846 * 9 8 7
11 11 C 1.47443 * 110.99774 * 189.13318 * 7 6 5
12 12 H 1.09010 * 109.89143 * 117.17365 * 11 7 6
13 13 C 1.50704 * 109.88994 * 356.15006 * 11 7 6
14 14 H 1.07999 * 119.99543 * 294.92103 * 13 11 7
15 15 C 1.37870 * 120.00279 * 114.92276 * 13 11 7
16 16 N 1.31518 * 120.00205 * 359.97438 * 15 13 11
17 17 Si 1.86802 * 119.99921 * 179.97438 * 15 13 11
18 18 H 1.48504 * 109.46840 * 179.97438 * 17 15 13
19 19 H 1.48496 * 109.47315 * 299.99714 * 17 15 13
20 20 H 1.48494 * 109.47084 * 60.00205 * 17 15 13
21 21 N 1.30258 * 108.75789 * 0.25713 * 5 4 3
22 22 H 1.09003 * 109.46911 * 89.98136 * 1 2 3
23 23 H 1.09002 * 109.46583 * 209.97131 * 1 2 3
24 24 H 1.08996 * 109.47523 * 329.97579 * 1 2 3
25 25 H 1.08000 * 126.44477 * 359.97438 * 3 2 1
26 26 H 1.09002 * 109.47158 * 150.01938 * 6 5 4
27 27 H 1.08996 * 109.47291 * 30.01861 * 6 5 4
28 28 H 1.09008 * 110.36996 * 265.19350 * 8 7 6
29 29 H 1.09002 * 110.37096 * 27.41966 * 8 7 6
30 30 H 1.09001 * 110.98944 * 81.01644 * 9 8 7
31 31 H 1.09000 * 110.98814 * 204.80440 * 9 8 7
32 32 H 1.08995 * 110.70865 * 277.27210 * 10 9 8
33 33 H 1.09001 * 110.70609 * 154.03875 * 10 9 8
34 34 H 0.97003 * 120.00010 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2996 1.0845 0.0000
4 8 3.5733 0.6447 0.0006
5 6 3.5431 -0.6947 0.0003
6 6 4.7480 -1.5997 0.0014
7 7 5.1411 -1.8932 -1.3833
8 6 5.6684 -0.6846 -2.0519
9 6 6.7612 -1.2105 -3.0157
10 6 7.3882 -2.3587 -2.1818
11 6 6.1752 -2.9432 -1.4278
12 1 5.7937 -3.8174 -1.9555
13 6 6.5781 -3.3257 -0.0268
14 1 7.0706 -2.6051 0.6091
15 6 6.3179 -4.5955 0.4429
16 7 5.7177 -5.4730 -0.3314
17 14 6.8179 -5.0698 2.1791
18 1 6.4283 -6.4791 2.4388
19 1 8.2885 -4.9269 2.3272
20 1 6.1336 -4.1804 3.1516
21 7 2.3006 -1.0856 -0.0059
22 1 -0.3633 0.0003 -1.0277
23 1 -0.3632 -0.8903 0.5134
24 1 -0.3634 0.8897 0.5142
25 1 1.9767 2.1152 -0.0004
26 1 4.5034 -2.5298 0.5145
27 1 5.5725 -1.1066 0.5163
28 1 4.8775 -0.1849 -2.6114
29 1 6.1019 -0.0041 -1.3190
30 1 6.3192 -1.5927 -3.9359
31 1 7.4976 -0.4362 -3.2308
32 1 8.1256 -1.9676 -1.4809
33 1 7.8348 -3.1092 -2.8339
34 1 5.5350 -6.3665 -0.0011
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259901245.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:48
Heat of formation + Delta-G solvation = 1.641430 kcal
Electronic energy + Delta-G solvation = -16980.197396 eV
Core-core repulsion = 14299.670272 eV
Total energy + Delta-G solvation = -2680.527123 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-44.20986 -39.78036 -36.05211 -34.69990 -33.96460 -31.71316 -30.23896 -28.49520
-26.56341 -26.28094 -22.76212 -22.04640 -21.65442 -21.09989 -18.66560 -17.82549
-17.66094 -16.80962 -16.44829 -15.96555 -15.66907 -15.05567 -14.56095 -14.25537
-14.10471 -13.79768 -13.76418 -13.31507 -12.99235 -12.81237 -12.54759 -12.46296
-12.19160 -11.99416 -11.89203 -11.76215 -11.40734 -11.25427 -11.10886 -10.67243
-9.63515 -9.01754 -8.12598 -6.29155 0.54578 1.40910 1.42211 1.49495
1.72598 1.91681 2.39051 3.04291 3.15516 3.67771 3.93410 4.01459
4.12061 4.15217 4.37801 4.48302 4.66731 4.71557 4.80752 4.86737
4.91938 4.96401 4.99606 5.08185 5.13908 5.16484 5.32904 5.36162
5.49082 5.59024 5.81311 5.95837 6.51425 6.54126 6.90980 6.94776
7.37381 8.89684
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021857 B = 0.008589 C = 0.006863
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1280.749522 B = 3259.298699 C = 4078.647315
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C -0.048 4.048
3 C -0.080 4.080
4 O -0.213 6.213
5 C 0.198 3.802
6 C 0.183 3.817
7 N -0.541 5.541
8 C 0.043 3.957
9 C -0.118 4.118
10 C -0.126 4.126
11 C 0.183 3.817
12 H 0.044 0.956
13 C -0.542 4.542
14 H 0.057 0.943
15 C 0.028 3.972
16 N -0.914 5.914
17 Si 0.948 3.052
18 H -0.286 1.286
19 H -0.266 1.266
20 H -0.270 1.270
21 N -0.512 5.512
22 H 0.081 0.919
23 H 0.063 0.937
24 H 0.106 0.894
25 H 0.260 0.740
26 H 0.092 0.908
27 H 0.056 0.944
28 H 0.062 0.938
29 H 0.041 0.959
30 H 0.068 0.932
31 H 0.090 0.910
32 H 0.057 0.943
33 H 0.056 0.944
34 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.661 13.253 -0.129 14.050
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C -0.167 4.167
3 C -0.150 4.150
4 O -0.099 6.099
5 C -0.010 4.010
6 C 0.055 3.945
7 N -0.267 5.267
8 C -0.085 4.085
9 C -0.156 4.156
10 C -0.166 4.166
11 C 0.078 3.922
12 H 0.062 0.938
13 C -0.581 4.581
14 H 0.075 0.925
15 C -0.174 4.174
16 N -0.552 5.552
17 Si 0.773 3.227
18 H -0.211 1.211
19 H -0.191 1.191
20 H -0.195 1.195
21 N -0.244 5.244
22 H 0.099 0.901
23 H 0.082 0.918
24 H 0.125 0.875
25 H 0.276 0.724
26 H 0.110 0.890
27 H 0.074 0.926
28 H 0.080 0.920
29 H 0.059 0.941
30 H 0.087 0.913
31 H 0.109 0.891
32 H 0.076 0.924
33 H 0.075 0.925
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -5.317 12.277 -0.404 13.385
hybrid contribution 1.035 0.143 1.256 1.634
sum -4.282 12.421 0.852 13.166
Atomic orbital electron populations
1.20185 0.84186 1.04179 1.03558 1.22601 0.99950 0.88074 1.06075
1.25592 0.79251 1.02305 1.07852 1.84449 1.31994 1.23784 1.69689
1.26746 0.95707 0.79270 0.99260 1.20125 0.87544 0.94103 0.92774
1.63827 1.41275 1.08052 1.13546 1.23009 0.96519 0.92244 0.96683
1.22647 0.97309 0.98045 0.97597 1.22808 0.98397 0.97390 0.97969
1.20108 0.86597 0.90218 0.95304 0.93757 1.21507 1.39272 0.97836
0.99514 0.92518 1.25731 0.94055 0.96659 1.00944 1.70027 1.41634
1.05573 1.37943 0.85767 0.79135 0.77304 0.80510 1.21112 1.19076
1.19509 1.70392 1.01577 1.33149 1.19274 0.90062 0.91816 0.87535
0.72428 0.88982 0.92591 0.91986 0.94074 0.91307 0.89131 0.92418
0.92472 0.92628
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.38 10.43 71.24 0.74 -0.64 16
2 C -0.05 -1.50 7.11 41.26 0.29 -1.21 16
3 C -0.08 -2.16 12.08 66.93 0.81 -1.36 16
4 O -0.21 -7.47 10.78 -3.80 -0.04 -7.51 16
5 C 0.20 8.22 7.29 88.34 0.64 8.86 16
6 C 0.18 8.36 4.33 85.56 0.37 8.73 16
7 N -0.54 -25.05 5.16 -869.41 -4.49 -29.53 16
8 C 0.04 1.64 6.15 86.77 0.53 2.17 16
9 C -0.12 -4.04 7.08 31.98 0.23 -3.81 16
10 C -0.13 -5.24 6.46 31.78 0.21 -5.03 16
11 C 0.18 9.18 3.71 44.51 0.16 9.35 16
12 H 0.04 2.61 6.97 -2.38 -0.02 2.59 16
13 C -0.54 -28.67 5.52 25.60 0.14 -28.53 16
14 H 0.06 2.92 7.27 -2.91 -0.02 2.90 16
15 C 0.03 1.52 5.38 84.65 0.46 1.97 16
16 N -0.91 -53.47 12.63 21.45 0.27 -53.20 16
17 Si 0.95 42.85 29.54 68.60 2.03 44.88 16
18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16
19 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16
20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16
21 N -0.51 -21.61 11.29 -291.97 -3.30 -24.91 16
22 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16
24 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16
25 H 0.26 3.74 8.06 -2.91 -0.02 3.71 16
26 H 0.09 4.82 6.94 -2.39 -0.02 4.81 16
27 H 0.06 2.45 7.15 -2.39 -0.02 2.44 16
28 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16
29 H 0.04 1.50 7.64 -2.39 -0.02 1.48 16
30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
31 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16
32 H 0.06 2.35 7.84 -2.39 -0.02 2.33 16
33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
34 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16
Total: -1.00 -66.04 283.41 0.14 -65.89
By element:
Atomic # 1 Polarization: 12.79 SS G_CDS: 1.08 Total: 13.87 kcal
Atomic # 6 Polarization: -14.08 SS G_CDS: 4.59 Total: -9.49 kcal
Atomic # 7 Polarization: -100.13 SS G_CDS: -7.51 Total: -107.64 kcal
Atomic # 8 Polarization: -7.47 SS G_CDS: -0.04 Total: -7.51 kcal
Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal
Total: -66.04 0.14 -65.89 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259901245.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.536 kcal
(2) G-P(sol) polarization free energy of solvation -66.035 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.501 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.641 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds