Wall clock time and date at job start Mon Mar 30 2020 03:08:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50700 * 109.47098 * 2 1
4 4 N 1.32042 * 118.77583 * 269.98206 * 3 2 1
5 5 C 1.32012 * 121.25382 * 179.72141 * 4 3 2
6 6 C 1.40919 * 118.83511 * 0.57283 * 5 4 3
7 7 C 1.41177 * 121.08627 * 179.71563 * 6 5 4
8 8 H 1.07997 * 119.99938 * 207.78706 * 7 6 5
9 9 C 1.39956 * 119.99855 * 27.78484 * 7 6 5
10 10 N 1.30854 * 119.99930 * 197.43742 * 9 7 6
11 11 Si 1.86795 * 119.99864 * 17.43839 * 9 7 6
12 12 H 1.48505 * 109.47306 * 269.99698 * 11 9 7
13 13 H 1.48501 * 109.47538 * 30.00082 * 11 9 7
14 14 H 1.48508 * 109.46992 * 150.00272 * 11 9 7
15 15 C 1.41871 * 117.82752 * 359.44669 * 6 5 4
16 16 O 1.35272 * 120.67986 * 180.25319 * 15 6 5
17 17 C 1.42900 * 116.99919 * 179.97438 * 16 15 6
18 18 C 1.53005 * 109.47311 * 149.99961 * 17 16 15
19 19 C 1.53002 * 109.47309 * 269.99614 * 17 16 15
20 20 N 1.31874 * 118.76847 * 90.00267 * 3 2 1
21 21 H 1.08997 * 109.47409 * 179.97438 * 1 2 3
22 22 H 1.09002 * 109.47057 * 300.00090 * 1 2 3
23 23 H 1.09002 * 109.47268 * 59.99501 * 1 2 3
24 24 H 1.08998 * 109.46750 * 240.00603 * 2 1 3
25 25 H 1.08990 * 109.47117 * 120.00092 * 2 1 3
26 26 H 1.08004 * 120.58303 * 180.29047 * 5 4 3
27 27 H 0.97002 * 119.99718 * 355.47012 * 10 9 7
28 28 H 1.08991 * 109.47251 * 29.99768 * 17 16 15
29 29 H 1.08997 * 109.46991 * 59.99303 * 18 17 16
30 30 H 1.08997 * 109.47405 * 180.02562 * 18 17 16
31 31 H 1.08998 * 109.46755 * 300.00376 * 18 17 16
32 32 H 1.09002 * 109.47243 * 300.00712 * 19 17 16
33 33 H 1.09003 * 109.47013 * 59.99774 * 19 17 16
34 34 H 1.08997 * 109.47680 * 180.02562 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2445 2.0200 -1.1574
5 6 2.6790 3.2652 -1.2144
6 6 2.9288 3.9538 -0.0106
7 6 3.3999 5.2846 -0.0162
8 1 3.9959 5.6499 0.8070
9 6 3.0946 6.1304 -1.0886
10 7 3.7869 7.2248 -1.2764
11 14 1.6988 5.6971 -2.2518
12 1 2.2247 4.8762 -3.3721
13 1 0.6633 4.9267 -1.5173
14 1 1.0986 6.9439 -2.7910
15 6 2.6859 3.2678 1.2073
16 8 2.9012 3.8755 2.3966
17 6 2.6302 3.1120 3.5737
18 6 3.5572 3.5683 4.7023
19 6 1.1740 3.3218 3.9937
20 7 2.2439 2.0192 1.1560
21 1 -0.3634 -1.0276 -0.0005
22 1 -0.3633 0.5139 0.8900
23 1 -0.3634 0.5139 -0.8899
24 1 1.8933 -0.5137 -0.8900
25 1 1.8933 -0.5138 0.8899
26 1 2.8445 3.7464 -2.1671
27 1 4.4678 7.4839 -0.6359
28 1 2.8005 2.0552 3.3685
29 1 3.3869 4.6252 4.9074
30 1 3.3508 2.9857 5.6000
31 1 4.5946 3.4189 4.4031
32 1 1.0036 4.3787 4.1988
33 1 0.5136 2.9968 3.1897
34 1 0.9674 2.7398 4.8918
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259906381.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:20
Heat of formation + Delta-G solvation = -41.971285 kcal
Electronic energy + Delta-G solvation = -17001.978545 eV
Core-core repulsion = 14319.560233 eV
Total energy + Delta-G solvation = -2682.418313 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.64763 -39.47236 -36.47762 -34.68355 -34.28188 -33.10695 -31.81719 -28.20136
-27.30367 -25.36890 -24.33314 -22.51900 -22.27420 -20.46186 -19.08634 -18.37755
-16.72311 -16.31451 -15.89027 -15.69491 -15.54746 -15.15103 -14.85439 -14.56376
-14.32285 -14.20160 -13.44942 -13.21089 -13.16440 -12.94064 -12.71670 -12.55723
-12.26403 -12.00649 -11.91272 -11.82956 -11.71625 -11.37097 -11.15772 -10.69831
-9.99892 -9.87822 -9.38150 -6.65004 0.36255 0.53400 1.30198 1.44771
1.66533 2.04698 2.23889 2.53606 3.29080 3.42500 3.59274 3.92864
4.05530 4.19051 4.26758 4.40875 4.47165 4.57405 4.65777 4.69141
4.80238 4.83154 4.87867 4.94400 5.05779 5.16295 5.24144 5.27737
5.34537 5.37358 5.55119 5.90807 6.02167 6.35458 6.46248 6.79598
7.61460 7.83659
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.017512 B = 0.011713 C = 0.007807
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1598.551358 B = 2389.988567 C = 3585.789567
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.030 4.030
3 C 0.199 3.801
4 N -0.507 5.507
5 C -0.009 4.009
6 C -0.029 4.029
7 C -0.497 4.497
8 H 0.059 0.941
9 C 0.016 3.984
10 N -0.818 5.818
11 Si 1.096 2.904
12 H -0.247 1.247
13 H -0.279 1.279
14 H -0.265 1.265
15 C 0.256 3.744
16 O -0.312 6.312
17 C 0.067 3.933
18 C -0.140 4.140
19 C -0.156 4.156
20 N -0.541 5.541
21 H 0.089 0.911
22 H 0.041 0.959
23 H 0.042 0.958
24 H 0.087 0.913
25 H 0.085 0.915
26 H 0.156 0.844
27 H 0.284 0.716
28 H 0.075 0.925
29 H 0.061 0.939
30 H 0.106 0.894
31 H 0.052 0.948
32 H 0.057 0.943
33 H 0.037 0.963
34 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.767 -8.511 6.078 11.494
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.069 4.069
3 C -0.065 4.065
4 N -0.223 5.223
5 C -0.172 4.172
6 C -0.036 4.036
7 C -0.527 4.527
8 H 0.077 0.923
9 C -0.201 4.201
10 N -0.440 5.440
11 Si 0.917 3.083
12 H -0.172 1.172
13 H -0.205 1.205
14 H -0.191 1.191
15 C 0.063 3.937
16 O -0.218 6.218
17 C 0.011 3.989
18 C -0.197 4.197
19 C -0.213 4.213
20 N -0.271 5.271
21 H 0.108 0.892
22 H 0.060 0.940
23 H 0.061 0.939
24 H 0.105 0.895
25 H 0.103 0.897
26 H 0.172 0.828
27 H 0.095 0.905
28 H 0.093 0.907
29 H 0.080 0.920
30 H 0.125 0.875
31 H 0.071 0.929
32 H 0.076 0.924
33 H 0.056 0.944
34 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -5.662 -8.573 4.811 11.345
hybrid contribution 1.591 0.878 1.621 2.435
sum -4.071 -7.696 6.431 10.824
Atomic orbital electron populations
1.21633 0.93714 1.02830 1.00886 1.20080 0.96678 0.86774 1.03367
1.22802 1.02754 0.98828 0.82147 1.67555 1.13533 1.10574 1.30602
1.22923 1.06479 0.90966 0.96835 1.18808 0.97403 0.96335 0.91056
1.20331 1.29384 0.95938 1.07061 0.92311 1.28206 1.00604 0.92822
0.98471 1.70580 1.16604 1.23555 1.33240 0.83310 0.73235 0.76566
0.75193 1.17217 1.20492 1.19074 1.20418 0.97420 0.89513 0.86372
1.86189 1.82125 1.41536 1.11990 1.22560 0.96821 0.96389 0.83113
1.21877 0.98340 1.02763 0.96741 1.22120 0.94731 1.02492 1.02002
1.67319 1.18375 1.09156 1.32243 0.89189 0.93961 0.93891 0.89478
0.89661 0.82763 0.90451 0.90738 0.91990 0.87496 0.92921 0.92433
0.94369 0.88303
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.68 9.89 71.98 0.71 -2.97 16
2 C -0.03 -0.96 6.35 29.85 0.19 -0.77 16
3 C 0.20 8.70 6.90 138.65 0.96 9.65 16
4 N -0.51 -24.01 10.29 -185.98 -1.91 -25.92 16
5 C -0.01 -0.45 8.58 85.32 0.73 0.29 16
6 C -0.03 -1.52 5.19 -21.00 -0.11 -1.63 16
7 C -0.50 -27.60 9.16 23.41 0.21 -27.38 16
8 H 0.06 3.48 7.94 -2.91 -0.02 3.46 16
9 C 0.02 0.82 5.44 85.25 0.46 1.28 16
10 N -0.82 -43.51 13.66 21.83 0.30 -43.21 16
11 Si 1.10 48.13 24.90 68.60 1.71 49.83 16
12 H -0.25 -9.90 6.43 99.48 0.64 -9.26 16
13 H -0.28 -12.77 6.99 99.48 0.70 -12.07 16
14 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16
15 C 0.26 12.85 7.53 85.48 0.64 13.50 16
16 O -0.31 -14.58 9.23 -85.57 -0.79 -15.37 16
17 C 0.07 2.35 3.13 30.60 0.10 2.45 16
18 C -0.14 -3.80 9.56 71.98 0.69 -3.11 16
19 C -0.16 -4.74 9.53 71.98 0.69 -4.05 16
20 N -0.54 -24.78 8.68 -299.04 -2.60 -27.38 16
21 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16
22 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16
23 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16
24 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16
25 H 0.08 2.47 8.14 -2.39 -0.02 2.46 16
26 H 0.16 7.41 4.35 -2.91 -0.01 7.40 16
27 H 0.28 14.96 8.73 -92.71 -0.81 14.16 16
28 H 0.07 2.68 7.02 -2.39 -0.02 2.67 16
29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16
31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16
33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16
34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16
Total: -1.00 -61.82 286.15 2.95 -58.87
By element:
Atomic # 1 Polarization: 14.96 SS G_CDS: 0.97 Total: 15.92 kcal
Atomic # 6 Polarization: -18.03 SS G_CDS: 5.27 Total: -12.76 kcal
Atomic # 7 Polarization: -92.30 SS G_CDS: -4.21 Total: -96.51 kcal
Atomic # 8 Polarization: -14.58 SS G_CDS: -0.79 Total: -15.37 kcal
Atomic # 14 Polarization: 48.13 SS G_CDS: 1.71 Total: 49.83 kcal
Total: -61.82 2.95 -58.87 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259906381.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.904 kcal
(2) G-P(sol) polarization free energy of solvation -61.821 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.917 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.875 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.971 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds