Wall clock time and date at job start Mon Mar 30 2020 03:05:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.50695 * 109.47062 * 2 1
4 4 N 1.31853 * 120.57228 * 90.00408 * 3 2 1
5 5 C 1.32567 * 121.03443 * 179.97438 * 4 3 2
6 6 O 1.35309 * 118.89611 * 180.02562 * 5 4 3
7 7 C 1.42899 * 117.00289 * 180.02562 * 6 5 4
8 8 C 1.52999 * 109.47374 * 149.99795 * 7 6 5
9 9 C 1.53007 * 109.46893 * 269.99541 * 7 6 5
10 10 N 1.32603 * 122.21457 * 359.97438 * 5 4 3
11 11 C 1.31821 * 121.02754 * 0.02562 * 10 5 4
12 12 C 1.41131 * 120.58059 * 270.00194 * 3 2 1
13 13 C 1.41315 * 120.98593 * 359.97438 * 12 3 2
14 14 H 1.08005 * 120.00050 * 24.57712 * 13 12 3
15 15 C 1.39888 * 120.00167 * 204.57932 * 13 12 3
16 16 N 1.30881 * 120.00030 * 14.11772 * 15 13 12
17 17 Si 1.86802 * 120.00445 * 194.12007 * 15 13 12
18 18 H 1.48495 * 109.47026 * 94.96733 * 17 15 13
19 19 H 1.48498 * 109.47241 * 214.97103 * 17 15 13
20 20 H 1.48501 * 109.46780 * 334.97030 * 17 15 13
21 21 H 1.08995 * 109.47087 * 59.99509 * 1 2 3
22 22 H 1.09006 * 109.47103 * 179.97438 * 1 2 3
23 23 H 1.08998 * 109.47019 * 299.99505 * 1 2 3
24 24 H 1.09008 * 109.46545 * 240.00412 * 2 1 3
25 25 H 1.08999 * 109.47506 * 120.00726 * 2 1 3
26 26 H 1.08998 * 109.46931 * 29.99373 * 7 6 5
27 27 H 1.09000 * 109.47203 * 59.99399 * 8 7 6
28 28 H 1.08995 * 109.47226 * 180.02562 * 8 7 6
29 29 H 1.09004 * 109.46906 * 300.00044 * 8 7 6
30 30 H 1.09000 * 109.46913 * 300.00128 * 9 7 6
31 31 H 1.09002 * 109.46507 * 60.00278 * 9 7 6
32 32 H 1.08995 * 109.46712 * 179.97438 * 9 7 6
33 33 H 1.08001 * 120.57648 * 179.97438 * 11 10 5
34 34 H 0.96997 * 120.00537 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2559 2.0530 1.1352
5 6 2.6983 3.3027 1.1459
6 8 2.9136 3.9099 2.3358
7 6 3.3897 5.2568 2.3001
8 6 2.8906 6.0071 3.5365
9 6 4.9197 5.2566 2.2868
10 7 2.9378 3.9773 0.0298
11 6 2.7431 3.4268 -1.1520
12 6 2.2716 2.0977 -1.2150
13 6 2.0478 1.4632 -2.4577
14 1 1.3463 0.6449 -2.5277
15 6 2.7348 1.8948 -3.5972
16 7 3.7724 2.6834 -3.4764
17 14 2.1715 1.3457 -5.2916
18 1 1.2757 2.3771 -5.8737
19 1 3.3539 1.1633 -6.1713
20 1 1.4371 0.0602 -5.1764
21 1 -0.3633 0.5139 -0.8899
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5137 0.8900
24 1 1.8933 -0.5138 -0.8901
25 1 1.8934 -0.5139 0.8899
26 1 3.0186 5.7496 1.4015
27 1 3.2617 5.5142 4.4351
28 1 3.2534 7.0346 3.5091
29 1 1.8006 6.0072 3.5461
30 1 5.2908 4.7637 3.1853
31 1 5.2752 4.7220 1.4058
32 1 5.2829 6.2839 2.2591
33 1 2.9402 3.9831 -2.0565
34 1 4.2490 2.9824 -4.2665
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259925070.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:05:18
Heat of formation + Delta-G solvation = -17.536065 kcal
Electronic energy + Delta-G solvation = -16769.116779 eV
Core-core repulsion = 14087.758057 eV
Total energy + Delta-G solvation = -2681.358722 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.56589 -37.60863 -34.21394 -33.67438 -32.42712 -30.90104 -29.41349 -26.90185
-25.54996 -23.82352 -22.15529 -21.51282 -19.75275 -17.70438 -17.17844 -16.41811
-15.05503 -14.87438 -14.17971 -13.99929 -13.54465 -13.18927 -12.94226 -12.83960
-12.17497 -11.98332 -11.91510 -11.86509 -11.59847 -11.36083 -11.29805 -11.08920
-10.73650 -10.68561 -10.27242 -10.25690 -10.00159 -9.53023 -9.32284 -9.09556
-7.75795 -7.49615 -6.94541 -4.50753 2.51741 2.71155 2.98676 3.02180
3.08190 3.76432 3.81582 4.52797 5.29209 5.38989 5.52089 5.59216
5.64666 5.75287 5.85420 5.86765 6.04735 6.09418 6.18360 6.21346
6.37085 6.44206 6.54624 6.55597 6.63432 6.78384 6.90583 6.97535
7.05328 7.37811 7.59234 8.11352 8.20185 8.34862 8.58406 8.93592
9.73938 9.98961
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026975 B = 0.007701 C = 0.006289
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1037.734566 B = 3634.890135 C = 4451.193760
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.047 4.047
3 C 0.074 3.926
4 N -0.502 5.502
5 C 0.356 3.644
6 O -0.305 6.305
7 C 0.092 3.908
8 C -0.146 4.146
9 C -0.164 4.164
10 N -0.551 5.551
11 C 0.108 3.892
12 C -0.006 4.006
13 C -0.435 4.435
14 H 0.088 0.912
15 C 0.071 3.929
16 N -0.797 5.797
17 Si 0.917 3.083
18 H -0.267 1.267
19 H -0.276 1.276
20 H -0.260 1.260
21 H 0.055 0.945
22 H 0.047 0.953
23 H 0.048 0.952
24 H 0.079 0.921
25 H 0.061 0.939
26 H 0.084 0.916
27 H 0.059 0.941
28 H 0.069 0.931
29 H 0.059 0.941
30 H 0.054 0.946
31 H 0.062 0.938
32 H 0.061 0.939
33 H 0.166 0.834
34 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.391 1.711 2.373 3.239
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.085 4.085
3 C -0.074 4.074
4 N -0.226 5.226
5 C 0.056 3.944
6 O -0.211 6.211
7 C 0.034 3.966
8 C -0.204 4.204
9 C -0.222 4.222
10 N -0.277 5.277
11 C -0.062 4.062
12 C -0.012 4.012
13 C -0.465 4.465
14 H 0.106 0.894
15 C -0.147 4.147
16 N -0.423 5.423
17 Si 0.741 3.259
18 H -0.192 1.192
19 H -0.201 1.201
20 H -0.183 1.183
21 H 0.075 0.925
22 H 0.066 0.934
23 H 0.067 0.933
24 H 0.097 0.903
25 H 0.079 0.921
26 H 0.102 0.898
27 H 0.078 0.922
28 H 0.088 0.912
29 H 0.078 0.922
30 H 0.073 0.927
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.183 0.817
34 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -1.051 2.236 3.455 4.247
hybrid contribution -0.074 -0.371 -1.778 1.818
sum -1.125 1.865 1.677 2.749
Atomic orbital electron populations
1.21668 0.95889 1.00372 1.01808 1.20043 0.95009 0.91565 1.01892
1.21178 1.03675 0.95658 0.86878 1.66593 1.15919 1.07763 1.32277
1.19842 1.02311 0.88251 0.83987 1.85856 1.82093 1.27852 1.25289
1.22018 0.93650 0.81567 0.99333 1.21864 1.01698 0.99219 0.97573
1.22182 0.95993 1.01567 1.02473 1.67455 1.20913 1.39836 0.99452
1.23270 0.97706 0.92451 0.92729 1.18972 0.94717 0.93464 0.94083
1.19422 1.20755 1.15224 0.91109 0.89405 1.26000 0.93149 0.93671
1.01901 1.69716 1.13396 1.26590 1.32601 0.86141 0.79226 0.80203
0.80355 1.19217 1.20136 1.18326 0.92543 0.93362 0.93257 0.90275
0.92079 0.89775 0.92152 0.91226 0.92238 0.92707 0.91921 0.92041
0.81704 0.90326
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.47 9.89 37.16 0.37 -2.10 16
2 C -0.05 -0.96 5.71 -27.88 -0.16 -1.11 16
3 C 0.07 1.83 6.15 -81.49 -0.50 1.33 16
4 N -0.50 -13.07 10.38 -10.33 -0.11 -13.18 16
5 C 0.36 9.16 8.45 -90.79 -0.77 8.39 16
6 O -0.30 -7.05 9.83 -17.62 -0.17 -7.23 16
7 C 0.09 1.71 3.09 -26.73 -0.08 1.62 16
8 C -0.15 -2.09 9.56 37.16 0.36 -1.73 16
9 C -0.16 -2.75 9.53 37.16 0.35 -2.40 16
10 N -0.55 -14.06 8.60 -14.09 -0.12 -14.18 16
11 C 0.11 2.82 9.99 -16.45 -0.16 2.66 16
12 C -0.01 -0.15 5.61 -106.52 -0.60 -0.75 16
13 C -0.43 -10.54 8.25 -37.80 -0.31 -10.85 16
14 H 0.09 2.00 6.82 -52.48 -0.36 1.65 16
15 C 0.07 1.63 5.25 -17.34 -0.09 1.54 16
16 N -0.80 -19.24 10.81 55.54 0.60 -18.64 16
17 Si 0.92 17.31 29.58 -169.99 -5.03 12.28 16
18 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16
19 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16
20 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16
21 H 0.06 1.03 8.03 -51.93 -0.42 0.61 16
22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16
23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
24 H 0.08 1.57 6.87 -51.92 -0.36 1.21 16
25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16
26 H 0.08 1.66 6.94 -51.93 -0.36 1.30 16
27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
33 H 0.17 4.29 6.14 -52.49 -0.32 3.96 16
34 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16
LS Contribution 288.37 15.07 4.35 4.35
Total: -1.00 -27.96 288.37 -6.83 -34.79
By element:
Atomic # 1 Polarization: 9.97 SS G_CDS: -4.75 Total: 5.22 kcal
Atomic # 6 Polarization: -1.81 SS G_CDS: -1.60 Total: -3.41 kcal
Atomic # 7 Polarization: -46.37 SS G_CDS: 0.37 Total: -46.00 kcal
Atomic # 8 Polarization: -7.05 SS G_CDS: -0.17 Total: -7.23 kcal
Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -27.96 -6.83 -34.79 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259925070.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.255 kcal
(2) G-P(sol) polarization free energy of solvation -27.956 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.701 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.536 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds