Wall clock time and date at job start Mon Mar 30 2020 03:00:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50690 * 1
3 3 C 1.34328 * 126.16870 * 2 1
4 4 O 1.34761 * 107.11509 * 180.02562 * 3 2 1
5 5 C 1.33966 * 107.75258 * 359.97438 * 4 3 2
6 6 C 1.50702 * 125.61405 * 179.97438 * 5 4 3
7 7 N 1.46896 * 109.47056 * 270.02515 * 6 5 4
8 8 C 1.47904 * 111.00054 * 69.88104 * 7 6 5
9 9 C 1.53995 * 107.05974 * 145.84166 * 8 7 6
10 10 C 1.54603 * 105.14000 * 358.77299 * 9 8 7
11 11 H 1.09000 * 110.72105 * 96.57841 * 10 9 8
12 12 C 1.50695 * 110.72429 * 219.68782 * 10 9 8
13 13 H 1.07995 * 120.00496 * 118.54590 * 12 10 9
14 14 C 1.37880 * 119.99572 * 298.54523 * 12 10 9
15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 10
16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 10
17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12
18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12
19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12
20 20 C 1.48539 * 110.99804 * 187.27402 * 7 6 5
21 21 N 1.30260 * 108.76412 * 0.26568 * 5 4 3
22 22 H 1.09003 * 109.47326 * 89.97241 * 1 2 3
23 23 H 1.09000 * 109.47505 * 209.97513 * 1 2 3
24 24 H 1.09003 * 109.46902 * 329.97782 * 1 2 3
25 25 H 1.08000 * 126.44245 * 359.97438 * 3 2 1
26 26 H 1.09006 * 109.46546 * 150.02555 * 6 5 4
27 27 H 1.08990 * 109.47254 * 30.03045 * 6 5 4
28 28 H 1.08993 * 109.91739 * 26.48681 * 8 7 6
29 29 H 1.09005 * 110.07588 * 265.28108 * 8 7 6
30 30 H 1.08996 * 110.30427 * 239.85691 * 9 8 7
31 31 H 1.09000 * 110.30899 * 117.68338 * 9 8 7
32 32 H 0.97006 * 119.99995 * 359.97438 * 15 14 12
33 33 H 1.09002 * 110.66679 * 81.84200 * 20 7 6
34 34 H 1.08997 * 110.66367 * 318.71520 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2997 1.0844 0.0000
4 8 3.5734 0.6445 -0.0006
5 6 3.5430 -0.6948 -0.0003
6 6 4.7479 -1.6000 -0.0014
7 7 5.1384 -1.8938 -1.3866
8 6 5.7000 -0.6942 -2.0448
9 6 6.7969 -1.1803 -3.0102
10 6 6.8398 -2.7155 -2.8325
11 1 6.2447 -3.2095 -3.6005
12 6 8.2611 -3.2158 -2.8579
13 1 8.6725 -3.7177 -1.9948
14 6 9.0363 -3.0326 -3.9834
15 7 8.5355 -2.4208 -5.0344
16 14 10.7978 -3.6532 -4.0153
17 1 10.8084 -5.1237 -3.8078
18 1 11.5742 -2.9952 -2.9339
19 1 11.4112 -3.3349 -5.3297
20 6 6.2117 -2.9197 -1.4309
21 7 2.3005 -1.0857 -0.0054
22 1 -0.3634 0.0005 -1.0277
23 1 -0.3634 -0.8902 0.5134
24 1 -0.3633 0.8898 0.5142
25 1 1.9769 2.1150 -0.0004
26 1 4.5041 -2.5299 0.5125
27 1 5.5732 -1.1069 0.5120
28 1 6.1314 -0.0284 -1.2976
29 1 4.9205 -0.1730 -2.6007
30 1 7.7580 -0.7415 -2.7425
31 1 6.5367 -0.9256 -4.0376
32 1 7.6206 -2.0988 -5.0180
33 1 5.7908 -3.9211 -1.3401
34 1 6.9491 -2.7389 -0.6489
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260001056.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:53
Heat of formation + Delta-G solvation = 18.879158 kcal
Electronic energy + Delta-G solvation = -16508.447603 eV
Core-core repulsion = 13828.667964 eV
Total energy + Delta-G solvation = -2679.779639 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-43.24504 -38.30292 -35.09159 -33.95032 -32.04165 -30.22661 -28.36752 -27.56974
-25.63162 -23.87041 -21.68007 -21.09587 -20.31214 -19.62313 -17.17119 -16.83760
-16.54923 -15.47447 -14.75959 -14.52853 -14.39303 -13.74884 -13.38316 -13.22751
-13.08412 -12.77929 -12.27605 -11.95757 -11.75697 -11.36821 -10.99926 -10.90963
-10.64237 -10.56886 -10.44173 -10.11323 -9.85220 -9.49813 -8.75859 -8.50264
-8.36479 -8.03103 -6.34617 -4.07979 1.48965 2.67429 2.83541 3.43321
3.44700 3.63536 4.00031 4.47936 4.58532 4.77749 4.87180 5.20974
5.36728 5.38965 5.44446 5.54205 5.58421 5.64600 5.82008 5.93476
5.98423 6.02467 6.18868 6.30926 6.34868 6.60410 6.84247 6.87619
7.20047 7.31906 7.39775 7.65267 7.85106 8.21979 8.41279 8.86919
9.64789 11.03659
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.065352 B = 0.004821 C = 0.004747
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 428.347426 B = 5806.271426 C = 5897.273086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 C -0.019 4.019
3 C -0.088 4.088
4 O -0.202 6.202
5 C 0.217 3.783
6 C 0.140 3.860
7 N -0.516 5.516
8 C 0.036 3.964
9 C -0.120 4.120
10 C 0.038 3.962
11 H 0.030 0.970
12 C -0.598 4.598
13 H 0.050 0.950
14 C 0.021 3.979
15 N -0.911 5.911
16 Si 1.067 2.933
17 H -0.288 1.288
18 H -0.289 1.289
19 H -0.283 1.283
20 C 0.051 3.949
21 N -0.473 5.473
22 H 0.073 0.927
23 H 0.074 0.926
24 H 0.071 0.929
25 H 0.211 0.789
26 H 0.113 0.887
27 H 0.062 0.938
28 H 0.035 0.965
29 H 0.061 0.939
30 H 0.063 0.937
31 H 0.055 0.945
32 H 0.273 0.727
33 H 0.071 0.929
34 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.036 6.393 10.397 16.455
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.139 4.139
3 C -0.159 4.159
4 O -0.088 6.088
5 C 0.009 3.991
6 C 0.010 3.990
7 N -0.242 5.242
8 C -0.092 4.092
9 C -0.159 4.159
10 C 0.019 3.981
11 H 0.048 0.952
12 C -0.636 4.636
13 H 0.068 0.932
14 C -0.184 4.184
15 N -0.547 5.547
16 Si 0.896 3.104
17 H -0.214 1.214
18 H -0.215 1.215
19 H -0.208 1.208
20 C -0.075 4.075
21 N -0.203 5.203
22 H 0.092 0.908
23 H 0.093 0.907
24 H 0.090 0.910
25 H 0.227 0.773
26 H 0.131 0.869
27 H 0.080 0.920
28 H 0.053 0.947
29 H 0.079 0.921
30 H 0.081 0.919
31 H 0.074 0.926
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -10.295 5.514 9.179 14.854
hybrid contribution -0.634 1.337 1.400 2.037
sum -10.929 6.850 10.579 16.682
Atomic orbital electron populations
1.20072 0.86728 1.03052 1.02828 1.21845 0.98125 0.88452 1.05453
1.24685 0.80476 1.00821 1.09895 1.84463 1.30468 1.24340 1.69548
1.26271 0.95365 0.78882 0.98606 1.20611 0.89200 0.95734 0.93417
1.64803 1.38513 1.09241 1.11625 1.22959 0.97213 0.91577 0.97404
1.22639 0.96077 0.99950 0.97198 1.19702 0.96246 0.91169 0.91027
0.95182 1.21909 0.96968 1.41815 1.02936 0.93155 1.25777 1.05251
0.95044 0.92287 1.70786 1.17950 1.35521 1.30436 0.83563 0.74776
0.76085 0.75987 1.21429 1.21540 1.20817 1.23304 0.90095 0.93691
1.00445 1.70369 1.00500 1.31039 1.18401 0.90783 0.90682 0.90963
0.77258 0.86907 0.91956 0.94655 0.92085 0.91852 0.92634 0.91503
0.91057 0.93924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.66 10.43 36.00 0.38 -0.28 16
2 C -0.02 -0.26 7.11 -82.81 -0.59 -0.85 16
3 C -0.09 -1.10 12.08 29.35 0.35 -0.74 16
4 O -0.20 -3.12 10.78 5.34 0.06 -3.06 16
5 C 0.22 3.57 7.35 -12.94 -0.10 3.47 16
6 C 0.14 2.24 5.39 -4.98 -0.03 2.21 16
7 N -0.52 -9.95 5.26 -231.89 -1.22 -11.17 16
8 C 0.04 0.72 6.17 -2.75 -0.02 0.70 16
9 C -0.12 -2.78 5.34 -25.37 -0.14 -2.91 16
10 C 0.04 0.94 2.62 -89.91 -0.24 0.70 16
11 H 0.03 0.82 8.08 -51.93 -0.42 0.40 16
12 C -0.60 -16.39 8.42 -34.44 -0.29 -16.68 16
13 H 0.05 1.36 7.78 -52.49 -0.41 0.95 16
14 C 0.02 0.59 5.33 -17.82 -0.10 0.50 16
15 N -0.91 -27.03 13.42 55.43 0.74 -26.28 16
16 Si 1.07 24.74 29.90 -169.99 -5.08 19.66 16
17 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16
18 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16
19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
20 C 0.05 1.06 5.95 -1.89 -0.01 1.05 16
21 N -0.47 -7.95 11.29 -7.36 -0.08 -8.03 16
22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
25 H 0.21 1.64 8.06 -52.49 -0.42 1.21 16
26 H 0.11 1.63 8.11 -51.93 -0.42 1.21 16
27 H 0.06 0.92 7.81 -51.93 -0.41 0.51 16
28 H 0.04 0.65 7.57 -51.93 -0.39 0.26 16
29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
30 H 0.06 1.55 7.84 -51.93 -0.41 1.14 16
31 H 0.05 1.32 6.97 -51.93 -0.36 0.96 16
32 H 0.27 8.04 5.53 -40.82 -0.23 7.81 16
33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16
34 H 0.04 0.86 7.92 -51.93 -0.41 0.45 16
LS Contribution 284.55 15.07 4.29 4.29
Total: -1.00 -31.51 284.55 -6.85 -38.36
By element:
Atomic # 1 Polarization: 3.85 SS G_CDS: -4.79 Total: -0.93 kcal
Atomic # 6 Polarization: -12.07 SS G_CDS: -0.77 Total: -12.83 kcal
Atomic # 7 Polarization: -44.92 SS G_CDS: -0.56 Total: -45.48 kcal
Atomic # 8 Polarization: -3.12 SS G_CDS: 0.06 Total: -3.06 kcal
Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -31.51 -6.85 -38.36 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260001056.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.238 kcal
(2) G-P(sol) polarization free energy of solvation -31.512 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.726 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.879 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds