Wall clock time and date at job start Mon Mar 30 2020 03:00:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50690 * 1
3 3 C 1.34328 * 126.16870 * 2 1
4 4 O 1.34761 * 107.11509 * 180.02562 * 3 2 1
5 5 C 1.33966 * 107.75258 * 359.97438 * 4 3 2
6 6 C 1.50702 * 125.61405 * 179.97438 * 5 4 3
7 7 N 1.46896 * 109.47056 * 270.02515 * 6 5 4
8 8 C 1.47904 * 111.00054 * 69.88104 * 7 6 5
9 9 C 1.53995 * 107.05974 * 145.84166 * 8 7 6
10 10 C 1.54603 * 105.14000 * 358.77299 * 9 8 7
11 11 H 1.09000 * 110.72105 * 96.57841 * 10 9 8
12 12 C 1.50695 * 110.72429 * 219.68782 * 10 9 8
13 13 H 1.07995 * 120.00496 * 118.54590 * 12 10 9
14 14 C 1.37880 * 119.99572 * 298.54523 * 12 10 9
15 15 N 1.31511 * 120.00327 * 0.02562 * 14 12 10
16 16 Si 1.86798 * 119.99951 * 180.02562 * 14 12 10
17 17 H 1.48506 * 109.47297 * 59.99744 * 16 14 12
18 18 H 1.48503 * 109.47261 * 299.99924 * 16 14 12
19 19 H 1.48500 * 109.47454 * 179.97438 * 16 14 12
20 20 C 1.48539 * 110.99804 * 187.27402 * 7 6 5
21 21 N 1.30260 * 108.76412 * 0.26568 * 5 4 3
22 22 H 1.09003 * 109.47326 * 89.97241 * 1 2 3
23 23 H 1.09000 * 109.47505 * 209.97513 * 1 2 3
24 24 H 1.09003 * 109.46902 * 329.97782 * 1 2 3
25 25 H 1.08000 * 126.44245 * 359.97438 * 3 2 1
26 26 H 1.09006 * 109.46546 * 150.02555 * 6 5 4
27 27 H 1.08990 * 109.47254 * 30.03045 * 6 5 4
28 28 H 1.08993 * 109.91739 * 26.48681 * 8 7 6
29 29 H 1.09005 * 110.07588 * 265.28108 * 8 7 6
30 30 H 1.08996 * 110.30427 * 239.85691 * 9 8 7
31 31 H 1.09000 * 110.30899 * 117.68338 * 9 8 7
32 32 H 0.97006 * 119.99995 * 359.97438 * 15 14 12
33 33 H 1.09002 * 110.66679 * 81.84200 * 20 7 6
34 34 H 1.08997 * 110.66367 * 318.71520 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 6 2.2997 1.0844 0.0000
4 8 3.5734 0.6445 -0.0006
5 6 3.5430 -0.6948 -0.0003
6 6 4.7479 -1.6000 -0.0014
7 7 5.1384 -1.8938 -1.3866
8 6 5.7000 -0.6942 -2.0448
9 6 6.7969 -1.1803 -3.0102
10 6 6.8398 -2.7155 -2.8325
11 1 6.2447 -3.2095 -3.6005
12 6 8.2611 -3.2158 -2.8579
13 1 8.6725 -3.7177 -1.9948
14 6 9.0363 -3.0326 -3.9834
15 7 8.5355 -2.4208 -5.0344
16 14 10.7978 -3.6532 -4.0153
17 1 10.8084 -5.1237 -3.8078
18 1 11.5742 -2.9952 -2.9339
19 1 11.4112 -3.3349 -5.3297
20 6 6.2117 -2.9197 -1.4309
21 7 2.3005 -1.0857 -0.0054
22 1 -0.3634 0.0005 -1.0277
23 1 -0.3634 -0.8902 0.5134
24 1 -0.3633 0.8898 0.5142
25 1 1.9769 2.1150 -0.0004
26 1 4.5041 -2.5299 0.5125
27 1 5.5732 -1.1069 0.5120
28 1 6.1314 -0.0284 -1.2976
29 1 4.9205 -0.1730 -2.6007
30 1 7.7580 -0.7415 -2.7425
31 1 6.5367 -0.9256 -4.0376
32 1 7.6206 -2.0988 -5.0180
33 1 5.7908 -3.9211 -1.3401
34 1 6.9491 -2.7389 -0.6489
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260001056.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:53
Heat of formation + Delta-G solvation = -4.553437 kcal
Electronic energy + Delta-G solvation = -16509.463717 eV
Core-core repulsion = 13828.667964 eV
Total energy + Delta-G solvation = -2680.795753 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-44.33150 -39.96698 -36.16819 -35.77800 -33.48736 -31.64594 -30.13558 -28.71532
-26.96448 -25.83266 -22.93114 -22.24640 -21.91953 -21.37221 -18.99782 -18.00450
-17.80989 -17.06496 -16.20396 -15.91744 -15.69788 -15.48644 -14.78524 -14.57034
-14.15688 -13.93161 -13.79283 -13.53649 -13.07974 -12.96076 -12.76361 -12.40308
-12.36318 -11.95360 -11.92134 -11.74391 -11.56621 -11.40530 -10.59424 -10.48261
-9.78376 -9.51458 -8.57254 -6.31548 0.41797 1.55896 1.58480 1.63619
1.78699 1.82486 2.59580 2.93183 3.08352 3.23167 3.81638 3.83156
3.97156 4.01674 4.22274 4.22954 4.36705 4.44419 4.62359 4.64215
4.77231 4.82469 4.84802 4.96680 4.98388 5.04301 5.05710 5.29869
5.40097 5.55843 5.67728 5.91985 6.13325 6.23591 6.65589 6.75974
7.50107 8.81312
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.065352 B = 0.004821 C = 0.004747
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 428.347426 B = 5806.271426 C = 5897.273086
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 C -0.044 4.044
3 C -0.075 4.075
4 O -0.214 6.214
5 C 0.193 3.807
6 C 0.142 3.858
7 N -0.525 5.525
8 C 0.051 3.949
9 C -0.110 4.110
10 C 0.025 3.975
11 H -0.003 1.003
12 C -0.608 4.608
13 H 0.053 0.947
14 C -0.029 4.029
15 N -0.938 5.938
16 Si 1.114 2.886
17 H -0.271 1.271
18 H -0.270 1.270
19 H -0.288 1.288
20 C 0.065 3.935
21 N -0.499 5.499
22 H 0.078 0.922
23 H 0.069 0.931
24 H 0.104 0.896
25 H 0.256 0.744
26 H 0.126 0.874
27 H 0.079 0.921
28 H 0.052 0.948
29 H 0.062 0.938
30 H 0.045 0.955
31 H 0.037 0.963
32 H 0.261 0.739
33 H 0.078 0.922
34 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.535 7.209 12.022 18.154
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.163 4.163
3 C -0.145 4.145
4 O -0.100 6.100
5 C -0.014 4.014
6 C 0.014 3.986
7 N -0.251 5.251
8 C -0.077 4.077
9 C -0.149 4.149
10 C 0.006 3.994
11 H 0.015 0.985
12 C -0.646 4.646
13 H 0.071 0.929
14 C -0.228 4.228
15 N -0.576 5.576
16 Si 0.936 3.064
17 H -0.196 1.196
18 H -0.195 1.195
19 H -0.213 1.213
20 C -0.062 4.062
21 N -0.230 5.230
22 H 0.097 0.903
23 H 0.088 0.912
24 H 0.122 0.878
25 H 0.272 0.728
26 H 0.144 0.856
27 H 0.097 0.903
28 H 0.070 0.930
29 H 0.081 0.919
30 H 0.064 0.936
31 H 0.055 0.945
32 H 0.072 0.928
33 H 0.097 0.903
34 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -10.817 6.333 10.832 16.566
hybrid contribution -0.599 1.123 0.910 1.564
sum -11.416 7.455 11.742 17.994
Atomic orbital electron populations
1.20200 0.84158 1.04447 1.03541 1.22529 0.99890 0.87997 1.05904
1.25617 0.79138 1.02510 1.07223 1.84455 1.32036 1.23918 1.69572
1.26167 0.95331 0.79436 1.00513 1.20633 0.89815 0.96843 0.91332
1.64719 1.37566 1.08571 1.14249 1.22771 0.95968 0.91988 0.96981
1.22408 0.96501 0.98809 0.97194 1.19682 0.95083 0.91899 0.92774
0.98488 1.22284 0.98151 1.41290 1.02913 0.92900 1.27210 1.09011
0.94618 0.91965 1.70899 1.17610 1.37469 1.31603 0.82962 0.70507
0.76657 0.76239 1.19649 1.19521 1.21341 1.23065 0.90563 0.94726
0.97827 1.70340 1.01194 1.32884 1.18614 0.90313 0.91164 0.87750
0.72824 0.85572 0.90339 0.93005 0.91920 0.93610 0.94453 0.92766
0.90318 0.93101
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.09 10.43 71.23 0.74 -0.34 16
2 C -0.04 -1.09 7.11 41.26 0.29 -0.80 16
3 C -0.08 -1.65 12.08 66.93 0.81 -0.84 16
4 O -0.21 -6.14 10.78 -3.81 -0.04 -6.18 16
5 C 0.19 6.06 7.35 88.34 0.65 6.71 16
6 C 0.14 4.32 5.39 85.56 0.46 4.78 16
7 N -0.53 -19.78 5.26 -887.56 -4.66 -24.45 16
8 C 0.05 1.98 6.17 86.45 0.53 2.51 16
9 C -0.11 -5.22 5.34 31.48 0.17 -5.06 16
10 C 0.02 1.26 2.62 -10.33 -0.03 1.23 16
11 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16
12 C -0.61 -33.62 8.42 25.60 0.22 -33.41 16
13 H 0.05 2.83 7.78 -2.91 -0.02 2.81 16
14 C -0.03 -1.66 5.33 84.66 0.45 -1.21 16
15 N -0.94 -57.07 13.42 21.45 0.29 -56.78 16
16 Si 1.11 49.52 29.90 68.60 2.05 51.57 16
17 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16
18 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16
19 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16
20 C 0.06 2.66 5.95 86.65 0.52 3.17 16
21 N -0.50 -16.12 11.29 -291.98 -3.30 -19.42 16
22 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16
24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16
25 H 0.26 2.81 8.06 -2.91 -0.02 2.78 16
26 H 0.13 3.44 8.11 -2.38 -0.02 3.42 16
27 H 0.08 2.13 7.81 -2.39 -0.02 2.11 16
28 H 0.05 1.84 7.57 -2.39 -0.02 1.82 16
29 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16
30 H 0.05 2.28 7.84 -2.39 -0.02 2.27 16
31 H 0.04 1.85 6.97 -2.39 -0.02 1.84 16
32 H 0.26 16.05 5.53 -92.70 -0.51 15.54 16
33 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16
34 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16
Total: -1.00 -68.97 284.55 0.48 -68.49
By element:
Atomic # 1 Polarization: 8.69 SS G_CDS: 1.34 Total: 10.02 kcal
Atomic # 6 Polarization: -28.06 SS G_CDS: 4.81 Total: -23.25 kcal
Atomic # 7 Polarization: -92.97 SS G_CDS: -7.67 Total: -100.65 kcal
Atomic # 8 Polarization: -6.14 SS G_CDS: -0.04 Total: -6.18 kcal
Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal
Total: -68.97 0.48 -68.49 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260001056.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.932 kcal
(2) G-P(sol) polarization free energy of solvation -68.968 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.485 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.553 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds