Wall clock time and date at job start Mon Mar 30 2020 03:03:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30257 * 125.62146 * 2 1
4 4 C 1.34476 * 108.70010 * 179.73350 * 3 2 1
5 5 C 1.34329 * 107.67040 * 0.39755 * 4 3 2
6 6 C 1.50696 * 126.44261 * 179.87032 * 5 4 3
7 7 N 1.46909 * 109.46832 * 89.71310 * 6 5 4
8 8 C 1.48555 * 111.00001 * 285.41802 * 7 6 5
9 9 C 1.54377 * 104.59390 * 200.95861 * 8 7 6
10 10 C 1.54256 * 105.06068 * 23.85282 * 9 8 7
11 11 C 1.48556 * 110.99846 * 169.99969 * 7 6 5
12 12 H 1.08996 * 110.51601 * 40.21095 * 11 7 6
13 13 C 1.50702 * 110.41086 * 277.81810 * 11 7 6
14 14 H 1.08002 * 120.00299 * 3.37973 * 13 11 7
15 15 C 1.37884 * 119.99942 * 183.09532 * 13 11 7
16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 11
17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 11
18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13
19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13
20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13
21 21 O 1.33965 * 125.61875 * 179.97438 * 2 1 3
22 22 H 1.09004 * 109.47464 * 270.01952 * 1 2 3
23 23 H 1.09000 * 109.46994 * 30.02291 * 1 2 3
24 24 H 1.09006 * 109.47174 * 150.02073 * 1 2 3
25 25 H 1.08006 * 126.16072 * 180.27014 * 4 3 2
26 26 H 1.08995 * 109.47371 * 329.71840 * 6 5 4
27 27 H 1.08993 * 109.47139 * 209.71013 * 6 5 4
28 28 H 1.09001 * 110.41291 * 82.18083 * 8 7 6
29 29 H 1.09003 * 110.41312 * 319.73913 * 8 7 6
30 30 H 1.09000 * 110.32653 * 264.95635 * 9 8 7
31 31 H 1.09008 * 110.32343 * 142.74983 * 9 8 7
32 32 H 1.08999 * 110.33091 * 241.10486 * 10 9 8
33 33 H 1.09000 * 110.41025 * 118.93910 * 10 9 8
34 34 H 0.96996 * 119.99730 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5521 0.6674 0.0059
5 6 3.5697 -0.6757 0.0007
6 6 4.7936 -1.5549 0.0016
7 7 5.1904 -1.8404 1.3870
8 6 5.8319 -0.6551 2.0121
9 6 6.6497 -1.2304 3.1883
10 6 6.9180 -2.7012 2.8084
11 6 6.2398 -2.8908 1.4346
12 1 6.9618 -2.7461 0.6309
13 6 5.6175 -4.2601 1.3402
14 1 4.5516 -4.3602 1.1978
15 6 6.4097 -5.3851 1.4297
16 7 5.8674 -6.5799 1.3419
17 14 8.2533 -5.2119 1.6759
18 1 8.5583 -5.1847 3.1290
19 1 8.9471 -6.3639 1.0459
20 1 8.7201 -3.9495 1.0484
21 8 2.2872 -1.0890 0.0005
22 1 -0.3634 0.0004 1.0277
23 1 -0.3633 0.8898 -0.5142
24 1 -0.3634 -0.8902 -0.5135
25 1 4.4156 1.3162 0.0115
26 1 5.6083 -1.0442 -0.5117
27 1 4.5698 -2.4898 -0.5121
28 1 5.0746 0.0379 2.3786
29 1 6.4896 -0.1584 1.2987
30 1 6.0734 -1.1771 4.1120
31 1 7.5899 -0.6896 3.2960
32 1 6.4735 -3.3699 3.5455
33 1 7.9897 -2.8841 2.7299
34 1 6.4246 -7.3713 1.4053
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260027544.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:23
Heat of formation + Delta-G solvation = 31.399548 kcal
Electronic energy + Delta-G solvation = -16822.948167 eV
Core-core repulsion = 14143.711452 eV
Total energy + Delta-G solvation = -2679.236715 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-43.02003 -38.29569 -34.45332 -33.24683 -32.44916 -31.08700 -29.06204 -27.78084
-24.76270 -23.81344 -21.91946 -20.93580 -20.17248 -19.74726 -16.83917 -16.59041
-16.45733 -15.34699 -15.01730 -14.35005 -14.07415 -13.69260 -13.36046 -13.06356
-13.03905 -12.73868 -12.61465 -12.10096 -11.76471 -11.32436 -11.14596 -11.00578
-10.76200 -10.67586 -10.27712 -10.17655 -9.90275 -9.82743 -9.21587 -8.61191
-8.42624 -7.72038 -6.10947 -4.09843 1.72762 2.88193 2.95986 3.23975
3.31168 3.33186 4.25109 4.35498 4.72348 5.05834 5.13886 5.22274
5.32181 5.36711 5.40316 5.50266 5.58340 5.66675 5.70740 5.95654
6.00183 6.10987 6.19276 6.32365 6.41413 6.53765 6.56274 6.65661
6.69557 7.08829 7.45176 7.69294 7.79110 7.97732 8.56104 8.98540
9.50209 11.02067
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033735 B = 0.006931 C = 0.006120
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.790251 B = 4038.956888 C = 4573.992986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 C 0.171 3.829
3 N -0.488 5.488
4 C -0.055 4.055
5 C -0.004 4.004
6 C 0.126 3.874
7 N -0.492 5.492
8 C 0.028 3.972
9 C -0.121 4.121
10 C -0.134 4.134
11 C 0.172 3.828
12 H 0.013 0.987
13 C -0.501 4.501
14 H 0.082 0.918
15 C 0.073 3.927
16 N -0.897 5.897
17 Si 0.876 3.124
18 H -0.275 1.275
19 H -0.292 1.292
20 H -0.268 1.268
21 O -0.189 6.189
22 H 0.089 0.911
23 H 0.095 0.905
24 H 0.086 0.914
25 H 0.177 0.823
26 H 0.064 0.936
27 H 0.104 0.896
28 H 0.069 0.931
29 H 0.035 0.965
30 H 0.064 0.936
31 H 0.056 0.944
32 H 0.077 0.923
33 H 0.048 0.952
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.543 12.449 -1.686 13.053
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.035 4.035
3 N -0.218 5.218
4 C -0.194 4.194
5 C -0.059 4.059
6 C -0.003 4.003
7 N -0.217 5.217
8 C -0.100 4.100
9 C -0.159 4.159
10 C -0.172 4.172
11 C 0.065 3.935
12 H 0.030 0.970
13 C -0.539 4.539
14 H 0.100 0.900
15 C -0.129 4.129
16 N -0.535 5.535
17 Si 0.704 3.296
18 H -0.201 1.201
19 H -0.219 1.219
20 H -0.193 1.193
21 O -0.075 6.075
22 H 0.108 0.892
23 H 0.114 0.886
24 H 0.105 0.895
25 H 0.194 0.806
26 H 0.082 0.918
27 H 0.122 0.878
28 H 0.087 0.913
29 H 0.053 0.947
30 H 0.083 0.917
31 H 0.075 0.925
32 H 0.095 0.905
33 H 0.067 0.933
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -4.252 12.626 -1.415 13.398
hybrid contribution 2.133 -0.400 -0.218 2.181
sum -2.119 12.227 -1.633 12.516
Atomic orbital electron populations
1.20171 0.81798 1.04646 1.04421 1.26162 0.96425 0.79054 1.01902
1.70346 1.02138 1.30500 1.18830 1.22916 0.94842 0.93029 1.08627
1.23598 0.83668 0.94933 1.03666 1.20579 0.88470 0.98444 0.92797
1.65306 1.37398 1.05450 1.13525 1.23151 0.96406 0.93979 0.96472
1.22253 0.98604 0.97025 0.98046 1.22796 0.98904 0.95110 1.00417
1.20705 0.88532 0.91871 0.92356 0.96966 1.20841 0.96541 0.86921
1.49617 0.89992 1.24876 0.98085 0.95152 0.94789 1.69882 1.35704
0.97560 1.50375 0.87002 0.86422 0.77388 0.78781 1.20119 1.21865
1.19276 1.84445 1.16785 1.37268 1.68986 0.89219 0.88593 0.89510
0.80601 0.91833 0.87799 0.91278 0.94723 0.91697 0.92510 0.90462
0.93320 0.92552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.52 10.51 36.00 0.38 -0.14 16
2 C 0.17 2.64 8.34 -12.95 -0.11 2.53 16
3 N -0.49 -8.05 11.29 -11.10 -0.13 -8.18 16
4 C -0.05 -0.88 11.53 -17.77 -0.20 -1.09 16
5 C 0.00 -0.08 6.61 -35.69 -0.24 -0.31 16
6 C 0.13 2.31 5.33 -4.97 -0.03 2.29 16
7 N -0.49 -10.14 5.00 -224.94 -1.12 -11.27 16
8 C 0.03 0.49 5.93 -2.19 -0.01 0.47 16
9 C -0.12 -2.09 7.00 -25.35 -0.18 -2.26 16
10 C -0.13 -2.82 4.82 -25.35 -0.12 -2.95 16
11 C 0.17 3.97 1.72 -67.22 -0.12 3.86 16
12 H 0.01 0.30 7.14 -51.93 -0.37 -0.07 16
13 C -0.50 -13.82 8.92 -34.44 -0.31 -14.13 16
14 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16
15 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16
16 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16
17 Si 0.88 21.06 24.69 -169.99 -4.20 16.87 16
18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
20 H -0.27 -6.13 6.35 56.52 0.36 -5.77 16
21 O -0.19 -3.44 10.78 5.37 0.06 -3.38 16
22 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16
23 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
24 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16
25 H 0.18 2.36 8.06 -52.48 -0.42 1.94 16
26 H 0.06 1.02 7.77 -51.93 -0.40 0.61 16
27 H 0.10 2.08 7.78 -51.93 -0.40 1.68 16
28 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16
29 H 0.03 0.54 7.75 -51.93 -0.40 0.14 16
30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
31 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16
32 H 0.08 1.75 7.85 -51.93 -0.41 1.34 16
33 H 0.05 1.00 5.75 -51.93 -0.30 0.70 16
34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
LS Contribution 279.70 15.07 4.22 4.22
Total: -1.00 -31.64 279.70 -6.27 -37.91
By element:
Atomic # 1 Polarization: 4.68 SS G_CDS: -4.84 Total: -0.16 kcal
Atomic # 6 Polarization: -8.75 SS G_CDS: -1.03 Total: -9.78 kcal
Atomic # 7 Polarization: -45.19 SS G_CDS: -0.48 Total: -45.67 kcal
Atomic # 8 Polarization: -3.44 SS G_CDS: 0.06 Total: -3.38 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -4.20 Total: 16.87 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -31.64 -6.27 -37.91 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260027544.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.307 kcal
(2) G-P(sol) polarization free energy of solvation -31.636 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.272 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.908 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.400 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds