Wall clock time and date at job start Mon Mar 30 2020 03:03:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30257 * 125.62146 * 2 1
4 4 C 1.34476 * 108.70010 * 179.73350 * 3 2 1
5 5 C 1.34329 * 107.67040 * 0.39755 * 4 3 2
6 6 C 1.50696 * 126.44261 * 179.87032 * 5 4 3
7 7 N 1.46909 * 109.46832 * 89.71310 * 6 5 4
8 8 C 1.48555 * 111.00001 * 285.41802 * 7 6 5
9 9 C 1.54377 * 104.59390 * 200.95861 * 8 7 6
10 10 C 1.54256 * 105.06068 * 23.85282 * 9 8 7
11 11 C 1.48556 * 110.99846 * 169.99969 * 7 6 5
12 12 H 1.08996 * 110.51601 * 40.21095 * 11 7 6
13 13 C 1.50702 * 110.41086 * 277.81810 * 11 7 6
14 14 H 1.08002 * 120.00299 * 3.37973 * 13 11 7
15 15 C 1.37884 * 119.99942 * 183.09532 * 13 11 7
16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 11
17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 11
18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13
19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13
20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13
21 21 O 1.33965 * 125.61875 * 179.97438 * 2 1 3
22 22 H 1.09004 * 109.47464 * 270.01952 * 1 2 3
23 23 H 1.09000 * 109.46994 * 30.02291 * 1 2 3
24 24 H 1.09006 * 109.47174 * 150.02073 * 1 2 3
25 25 H 1.08006 * 126.16072 * 180.27014 * 4 3 2
26 26 H 1.08995 * 109.47371 * 329.71840 * 6 5 4
27 27 H 1.08993 * 109.47139 * 209.71013 * 6 5 4
28 28 H 1.09001 * 110.41291 * 82.18083 * 8 7 6
29 29 H 1.09003 * 110.41312 * 319.73913 * 8 7 6
30 30 H 1.09000 * 110.32653 * 264.95635 * 9 8 7
31 31 H 1.09008 * 110.32343 * 142.74983 * 9 8 7
32 32 H 1.08999 * 110.33091 * 241.10486 * 10 9 8
33 33 H 1.09000 * 110.41025 * 118.93910 * 10 9 8
34 34 H 0.96996 * 119.99730 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5521 0.6674 0.0059
5 6 3.5697 -0.6757 0.0007
6 6 4.7936 -1.5549 0.0016
7 7 5.1904 -1.8404 1.3870
8 6 5.8319 -0.6551 2.0121
9 6 6.6497 -1.2304 3.1883
10 6 6.9180 -2.7012 2.8084
11 6 6.2398 -2.8908 1.4346
12 1 6.9618 -2.7461 0.6309
13 6 5.6175 -4.2601 1.3402
14 1 4.5516 -4.3602 1.1978
15 6 6.4097 -5.3851 1.4297
16 7 5.8674 -6.5799 1.3419
17 14 8.2533 -5.2119 1.6759
18 1 8.5583 -5.1847 3.1290
19 1 8.9471 -6.3639 1.0459
20 1 8.7201 -3.9495 1.0484
21 8 2.2872 -1.0890 0.0005
22 1 -0.3634 0.0004 1.0277
23 1 -0.3633 0.8898 -0.5142
24 1 -0.3634 -0.8902 -0.5135
25 1 4.4156 1.3162 0.0115
26 1 5.6083 -1.0442 -0.5117
27 1 4.5698 -2.4898 -0.5121
28 1 5.0746 0.0379 2.3786
29 1 6.4896 -0.1584 1.2987
30 1 6.0734 -1.1771 4.1120
31 1 7.5899 -0.6896 3.2960
32 1 6.4735 -3.3699 3.5455
33 1 7.9897 -2.8841 2.7299
34 1 6.4246 -7.3713 1.4053
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260027544.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:23
Heat of formation + Delta-G solvation = 6.260279 kcal
Electronic energy + Delta-G solvation = -16824.038287 eV
Core-core repulsion = 14143.711452 eV
Total energy + Delta-G solvation = -2680.326835 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-44.28501 -39.85773 -35.72688 -34.93259 -34.21153 -32.24598 -30.83605 -29.03962
-26.33805 -25.46247 -23.18713 -22.23942 -21.67013 -21.41596 -18.79637 -17.90538
-17.78785 -16.90901 -16.63890 -15.80817 -15.48728 -15.28918 -14.82025 -14.56447
-14.37036 -13.89666 -13.70912 -13.33435 -13.28536 -12.94773 -12.75029 -12.47309
-12.27668 -12.23997 -11.98555 -11.67312 -11.58046 -11.47643 -11.09750 -10.73878
-9.69761 -9.24816 -8.28762 -6.32722 0.46317 1.33475 1.35950 1.45379
1.66226 1.77813 2.32919 3.03715 3.17154 3.28480 3.81591 3.92367
3.95695 4.11062 4.20280 4.26553 4.49960 4.53309 4.63415 4.65809
4.71212 4.78969 4.80759 5.00240 5.02997 5.04930 5.11141 5.26294
5.40507 5.42973 5.63892 5.87164 6.22184 6.51095 6.72557 6.74017
7.31559 8.88578
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033735 B = 0.006931 C = 0.006120
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.790251 B = 4038.956888 C = 4573.992986
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 C 0.176 3.824
3 N -0.508 5.508
4 C -0.038 4.038
5 C -0.036 4.036
6 C 0.132 3.868
7 N -0.520 5.520
8 C 0.031 3.969
9 C -0.114 4.114
10 C -0.135 4.135
11 C 0.173 3.827
12 H 0.016 0.984
13 C -0.504 4.504
14 H 0.027 0.973
15 C 0.013 3.987
16 N -0.951 5.951
17 Si 0.944 3.056
18 H -0.262 1.262
19 H -0.294 1.294
20 H -0.242 1.242
21 O -0.218 6.218
22 H 0.106 0.894
23 H 0.117 0.883
24 H 0.100 0.900
25 H 0.204 0.796
26 H 0.091 0.909
27 H 0.069 0.931
28 H 0.078 0.922
29 H 0.061 0.939
30 H 0.069 0.931
31 H 0.092 0.908
32 H 0.051 0.949
33 H 0.060 0.940
34 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.201 15.278 -1.294 15.490
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.031 4.031
3 N -0.239 5.239
4 C -0.177 4.177
5 C -0.089 4.089
6 C 0.004 3.996
7 N -0.244 5.244
8 C -0.096 4.096
9 C -0.152 4.152
10 C -0.174 4.174
11 C 0.065 3.935
12 H 0.033 0.967
13 C -0.542 4.542
14 H 0.046 0.954
15 C -0.184 4.184
16 N -0.591 5.591
17 Si 0.768 3.232
18 H -0.187 1.187
19 H -0.221 1.221
20 H -0.165 1.165
21 O -0.106 6.106
22 H 0.124 0.876
23 H 0.136 0.864
24 H 0.119 0.881
25 H 0.221 0.779
26 H 0.109 0.891
27 H 0.088 0.912
28 H 0.096 0.904
29 H 0.079 0.921
30 H 0.088 0.912
31 H 0.110 0.890
32 H 0.070 0.930
33 H 0.078 0.922
34 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -2.916 15.499 -1.022 15.804
hybrid contribution 1.506 -1.260 -0.374 1.999
sum -1.410 14.239 -1.396 14.377
Atomic orbital electron populations
1.20512 0.78276 1.06394 1.05971 1.27343 0.98202 0.78126 0.99400
1.70421 1.02440 1.30796 1.20213 1.23309 0.95617 0.92483 1.06263
1.23480 0.83345 0.95451 1.06628 1.20455 0.89940 0.97467 0.91757
1.65160 1.37328 1.06722 1.15226 1.23219 0.96947 0.92751 0.96713
1.22267 1.00443 0.94303 0.98144 1.22668 0.98918 0.97618 0.98181
1.20509 0.89080 0.90114 0.93750 0.96672 1.21050 0.94276 0.90085
1.48820 0.95421 1.25794 1.03710 0.94455 0.94469 1.70055 1.37913
0.98669 1.52477 0.85901 0.79535 0.78259 0.79474 1.18742 1.22074
1.16536 1.84441 1.17548 1.38874 1.69714 0.87574 0.86414 0.88143
0.77876 0.89107 0.91214 0.90365 0.92131 0.91195 0.88968 0.93038
0.92162 0.92504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.96 10.51 71.23 0.75 -0.21 16
2 C 0.18 5.21 8.34 88.34 0.74 5.94 16
3 N -0.51 -15.85 11.29 -303.83 -3.43 -19.28 16
4 C -0.04 -1.15 11.53 83.39 0.96 -0.19 16
5 C -0.04 -1.25 6.61 24.79 0.16 -1.08 16
6 C 0.13 4.87 5.33 85.55 0.46 5.33 16
7 N -0.52 -21.14 5.00 -865.58 -4.32 -25.46 16
8 C 0.03 0.97 5.93 86.45 0.51 1.48 16
9 C -0.11 -3.50 7.00 31.49 0.22 -3.28 16
10 C -0.14 -5.44 4.82 31.49 0.15 -5.29 16
11 C 0.17 7.91 1.72 44.32 0.08 7.98 16
12 H 0.02 0.70 7.14 -2.39 -0.02 0.69 16
13 C -0.50 -29.02 8.92 25.60 0.23 -28.79 16
14 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16
15 C 0.01 0.74 5.46 84.66 0.46 1.21 16
16 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16
17 Si 0.94 43.33 24.69 68.60 1.69 45.02 16
18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16
19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16
20 H -0.24 -10.01 6.35 99.48 0.63 -9.38 16
21 O -0.22 -8.02 10.78 -3.72 -0.04 -8.06 16
22 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16
23 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16
24 H 0.10 1.50 8.14 -2.38 -0.02 1.49 16
25 H 0.20 4.74 8.06 -2.91 -0.02 4.72 16
26 H 0.09 2.76 7.77 -2.39 -0.02 2.74 16
27 H 0.07 2.97 7.78 -2.39 -0.02 2.95 16
28 H 0.08 2.31 8.09 -2.39 -0.02 2.29 16
29 H 0.06 1.59 7.75 -2.39 -0.02 1.57 16
30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
31 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16
32 H 0.05 2.30 7.85 -2.39 -0.02 2.28 16
33 H 0.06 2.26 5.75 -2.39 -0.01 2.24 16
34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16
Total: -1.00 -72.01 279.70 -0.08 -72.08
By element:
Atomic # 1 Polarization: 11.07 SS G_CDS: 1.01 Total: 12.08 kcal
Atomic # 6 Polarization: -21.62 SS G_CDS: 4.72 Total: -16.90 kcal
Atomic # 7 Polarization: -96.76 SS G_CDS: -7.46 Total: -104.22 kcal
Atomic # 8 Polarization: -8.02 SS G_CDS: -0.04 Total: -8.06 kcal
Atomic # 14 Polarization: 43.33 SS G_CDS: 1.69 Total: 45.02 kcal
Total: -72.01 -0.08 -72.08 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260027544.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.343 kcal
(2) G-P(sol) polarization free energy of solvation -72.005 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.338 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.083 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds