Wall clock time and date at job start Mon Mar 30 2020 03:28:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53004 * 109.46709 * 2 1
4 4 H 1.09005 * 109.46994 * 305.56306 * 3 2 1
5 5 C 1.50693 * 109.47244 * 65.56937 * 3 2 1
6 6 H 1.07999 * 120.00252 * 28.11176 * 5 3 2
7 7 C 1.37882 * 119.99498 * 208.11576 * 5 3 2
8 8 N 1.31507 * 120.00072 * 6.10949 * 7 5 3
9 9 Si 1.86800 * 119.99537 * 186.10927 * 7 5 3
10 10 H 1.48502 * 109.47483 * 59.99853 * 9 7 5
11 11 H 1.48499 * 109.47161 * 180.02562 * 9 7 5
12 12 H 1.48500 * 109.47538 * 300.00012 * 9 7 5
13 13 C 1.53007 * 109.46790 * 185.56742 * 3 2 1
14 14 N 1.46500 * 109.46898 * 64.99769 * 13 3 2
15 15 C 1.34784 * 119.99374 * 179.97438 * 14 13 3
16 16 O 1.21617 * 120.00209 * 0.02562 * 15 14 13
17 17 C 1.47266 * 119.99347 * 179.97438 * 15 14 13
18 18 C 1.46686 * 126.93686 * 179.97438 * 17 15 14
19 19 C 1.34487 * 106.33408 * 180.02562 * 18 17 15
20 20 N 1.36445 * 108.85237 * 0.02562 * 19 18 17
21 21 H 0.97001 * 124.85155 * 179.97438 * 20 19 18
22 22 C 1.34659 * 110.29941 * 0.26301 * 20 19 18
23 23 H 1.08996 * 109.47026 * 174.04907 * 1 2 3
24 24 H 1.09002 * 109.47286 * 294.04879 * 1 2 3
25 25 H 1.08995 * 109.47275 * 54.04744 * 1 2 3
26 26 H 1.08994 * 109.46687 * 240.00200 * 2 1 3
27 27 H 1.08999 * 109.47259 * 120.00096 * 2 1 3
28 28 H 0.97008 * 120.00004 * 180.02562 * 8 7 5
29 29 H 1.09002 * 109.46656 * 305.00316 * 13 3 2
30 30 H 1.08998 * 109.47094 * 185.00101 * 13 3 2
31 31 H 0.96992 * 120.00539 * 0.02562 * 14 13 3
32 32 H 1.08003 * 126.83707 * 0.02562 * 18 17 15
33 33 H 1.07994 * 125.57521 * 179.97438 * 19 18 17
34 34 H 1.08007 * 125.79980 * 179.73350 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.5975 1.9843 -0.8360
5 6 1.6533 2.1120 1.2935
6 1 1.5267 1.5228 2.1897
7 6 1.4613 3.4768 1.3328
8 7 1.4969 4.1781 0.2209
9 14 1.1504 4.3296 2.9655
10 1 2.3064 4.1037 3.8700
11 1 0.9767 5.7867 2.7377
12 1 -0.0796 3.7761 3.5868
13 6 3.5636 1.4449 -0.1400
14 7 3.9345 0.9026 -1.4494
15 6 5.2335 0.8083 -1.7962
16 8 6.0977 1.1729 -1.0221
17 6 5.6063 0.2626 -3.1123
18 6 6.9629 0.0925 -3.6439
19 6 6.8241 -0.4365 -4.8725
20 7 5.4951 -0.6023 -5.1336
21 1 5.1332 -0.9671 -5.9563
22 6 4.7576 -0.1811 -4.0886
23 1 -0.3633 -1.0221 -0.1065
24 1 -0.3634 0.4188 0.9385
25 1 -0.3633 0.6033 -0.8318
26 1 1.8933 -0.5138 -0.8900
27 1 1.8934 -0.5138 0.8900
28 1 1.3622 5.1384 0.2486
29 1 4.0015 0.8290 0.6456
30 1 3.9351 2.4657 -0.0509
31 1 3.2453 0.6122 -2.0670
32 1 7.8889 0.3424 -3.1474
33 1 7.6322 -0.6882 -5.5431
34 1 3.6792 -0.1945 -4.0302
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260117837.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:15
Heat of formation + Delta-G solvation = -34.765799 kcal
Electronic energy + Delta-G solvation = -16313.280052 eV
Core-core repulsion = 13631.174192 eV
Total energy + Delta-G solvation = -2682.105859 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.94485 -40.04408 -37.52381 -34.79968 -33.62881 -31.92262 -30.50374 -29.37045
-26.77782 -24.50172 -23.35377 -21.49357 -21.20020 -20.55036 -19.52232 -18.45265
-17.15728 -16.49158 -16.38680 -16.11707 -15.18661 -14.91017 -14.82955 -14.51079
-14.37165 -13.95392 -13.82595 -13.63804 -13.01374 -12.90857 -12.79885 -12.65628
-12.25123 -11.92831 -11.53467 -11.14944 -10.96924 -10.77089 -10.52314 -9.98625
-9.63034 -9.24463 -8.14627 -6.21607 0.84705 1.41349 1.44745 1.50745
1.59169 2.36401 2.45019 2.63021 2.67963 3.21490 4.13272 4.16298
4.35948 4.43511 4.52255 4.57352 4.69208 4.83117 4.97626 5.08268
5.14177 5.17323 5.26197 5.35792 5.55393 5.61699 5.65367 5.77631
5.84355 5.93937 5.98426 6.37421 6.73872 6.84310 6.96478 7.45285
7.49523 8.94512
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033495 B = 0.005684 C = 0.005214
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 835.734676 B = 4925.016172 C = 5368.877348
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.106 4.106
3 C 0.032 3.968
4 H 0.036 0.964
5 C -0.520 4.520
6 H 0.054 0.946
7 C 0.017 3.983
8 N -0.920 5.920
9 Si 0.946 3.054
10 H -0.277 1.277
11 H -0.286 1.286
12 H -0.265 1.265
13 C 0.148 3.852
14 N -0.709 5.709
15 C 0.570 3.430
16 O -0.613 6.613
17 C -0.271 4.271
18 C -0.189 4.189
19 C 0.004 3.996
20 N -0.532 5.532
21 H 0.439 0.561
22 C 0.067 3.933
23 H 0.062 0.938
24 H 0.039 0.961
25 H 0.041 0.959
26 H 0.060 0.940
27 H 0.041 0.959
28 H 0.261 0.739
29 H 0.033 0.967
30 H 0.016 0.984
31 H 0.407 0.593
32 H 0.130 0.870
33 H 0.211 0.789
34 H 0.201 0.799
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.079 -11.586 -13.767 18.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.143 4.143
3 C 0.013 3.987
4 H 0.054 0.946
5 C -0.558 4.558
6 H 0.072 0.928
7 C -0.182 4.182
8 N -0.558 5.558
9 Si 0.771 3.229
10 H -0.202 1.202
11 H -0.212 1.212
12 H -0.190 1.190
13 C 0.024 3.976
14 N -0.359 5.359
15 C 0.360 3.640
16 O -0.497 6.497
17 C -0.281 4.281
18 C -0.213 4.213
19 C -0.124 4.124
20 N -0.128 5.128
21 H 0.280 0.720
22 C -0.071 4.071
23 H 0.081 0.919
24 H 0.058 0.942
25 H 0.061 0.939
26 H 0.078 0.922
27 H 0.060 0.940
28 H 0.070 0.930
29 H 0.051 0.949
30 H 0.034 0.966
31 H 0.243 0.757
32 H 0.148 0.852
33 H 0.227 0.773
34 H 0.218 0.782
Dipole moment (debyes) X Y Z Total
from point charges 3.600 -11.208 -13.415 17.848
hybrid contribution -0.350 0.863 0.733 1.186
sum 3.250 -10.345 -12.682 16.685
Atomic orbital electron populations
1.21535 0.95620 1.00292 1.01113 1.21504 0.96382 0.96451 0.99985
1.19017 0.88729 0.93557 0.97370 0.94553 1.21278 1.46222 0.92414
0.95902 0.92799 1.25713 0.94852 0.98598 0.99046 1.70027 1.50756
1.07128 1.27936 0.85799 0.78886 0.77402 0.80769 1.20230 1.21199
1.18987 1.21447 0.98834 0.94984 0.82347 1.45988 1.06762 1.63998
1.19112 1.18198 0.82223 0.77071 0.86494 1.90671 1.50884 1.53139
1.55033 1.20526 0.96138 1.16015 0.95428 1.22089 0.95668 1.06912
0.96669 1.22232 0.86560 1.05749 0.97900 1.41597 1.06040 1.48850
1.16316 0.71975 1.22250 0.98246 0.99341 0.87248 0.91885 0.94224
0.93936 0.92185 0.93977 0.93017 0.94854 0.96585 0.75710 0.85210
0.77254 0.78179
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.55 9.63 71.98 0.69 -3.86 16
2 C -0.11 -4.06 5.32 30.60 0.16 -3.89 16
3 C 0.03 1.55 1.87 -11.54 -0.02 1.53 16
4 H 0.04 1.91 7.43 -2.38 -0.02 1.89 16
5 C -0.52 -28.07 7.42 25.60 0.19 -27.88 16
6 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16
7 C 0.02 0.96 5.45 84.66 0.46 1.42 16
8 N -0.92 -53.84 12.87 21.45 0.28 -53.57 16
9 Si 0.95 44.23 29.54 68.60 2.03 46.26 16
10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16
11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16
12 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
13 C 0.15 7.24 5.05 86.38 0.44 7.67 16
14 N -0.71 -28.38 5.22 -466.51 -2.43 -30.81 16
15 C 0.57 24.11 7.81 86.62 0.68 24.79 16
16 O -0.61 -32.07 16.97 -4.08 -0.07 -32.14 16
17 C -0.27 -8.61 6.29 -19.04 -0.12 -8.73 16
18 C -0.19 -5.28 10.97 23.62 0.26 -5.02 16
19 C 0.00 0.07 11.89 83.12 0.99 1.06 16
20 N -0.53 -7.20 5.90 -194.56 -1.15 -8.35 16
21 H 0.44 2.00 8.96 -92.71 -0.83 1.17 16
22 C 0.07 1.38 11.40 83.91 0.96 2.34 16
23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
24 H 0.04 1.55 7.59 -2.39 -0.02 1.53 16
25 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
26 H 0.06 1.93 7.06 -2.39 -0.02 1.92 16
27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
28 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16
29 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16
30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16
31 H 0.41 13.10 6.60 -92.71 -0.61 12.49 16
32 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16
33 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16
34 H 0.20 2.81 7.45 -2.91 -0.02 2.78 16
Total: -1.00 -76.58 292.97 3.00 -73.58
By element:
Atomic # 1 Polarization: 15.94 SS G_CDS: -0.33 Total: 15.61 kcal
Atomic # 6 Polarization: -15.26 SS G_CDS: 4.68 Total: -10.57 kcal
Atomic # 7 Polarization: -89.42 SS G_CDS: -3.31 Total: -92.73 kcal
Atomic # 8 Polarization: -32.07 SS G_CDS: -0.07 Total: -32.14 kcal
Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal
Total: -76.58 3.00 -73.58 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260117837.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.810 kcal
(2) G-P(sol) polarization free energy of solvation -76.576 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.766 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.766 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds