Wall clock time and date at job start Mon Mar 30 2020 03:37:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.45413 * 2 1
4 4 C 1.53118 * 109.47381 * 119.98281 * 2 1 3
5 5 C 1.53360 * 109.50652 * 49.73970 * 4 2 1
6 6 C 1.50845 * 108.37802 * 49.96717 * 5 4 2
7 7 C 1.39294 * 127.90351 * 163.36369 * 6 5 4
8 8 N 1.31064 * 108.08131 * 180.08261 * 7 6 5
9 9 N 1.40294 * 108.27053 * 359.97438 * 8 7 6
10 10 C 1.46498 * 126.09536 * 179.97438 * 9 8 7
11 11 C 1.34333 * 107.81629 * 359.95275 * 9 8 7
12 12 C 1.50825 * 128.03345 * 180.10772 * 11 9 8
13 13 O 1.42897 * 109.68566 * 283.11712 * 12 11 9
14 14 C 1.50698 * 109.68236 * 43.63726 * 12 11 9
15 15 H 1.08000 * 120.00460 * 24.49592 * 14 12 11
16 16 C 1.37875 * 120.00167 * 204.50204 * 14 12 11
17 17 N 1.31516 * 120.00394 * 177.77139 * 16 14 12
18 18 Si 1.86804 * 119.99809 * 357.77409 * 16 14 12
19 19 H 1.48497 * 109.47123 * 84.29758 * 18 16 14
20 20 H 1.48499 * 109.46879 * 204.30027 * 18 16 14
21 21 H 1.48504 * 109.46852 * 324.29688 * 18 16 14
22 22 H 1.09001 * 109.46836 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.47046 * 299.97217 * 1 2 3
24 24 H 1.08990 * 109.47476 * 59.97312 * 1 2 3
25 25 H 1.08998 * 109.46447 * 289.73250 * 4 2 1
26 26 H 1.09005 * 109.47229 * 169.75185 * 4 2 1
27 27 H 1.09005 * 109.68293 * 290.24671 * 5 4 2
28 28 H 1.09001 * 109.71807 * 169.70633 * 5 4 2
29 29 H 1.08002 * 125.95483 * 0.11837 * 7 6 5
30 30 H 1.09005 * 109.47063 * 264.31196 * 10 9 8
31 31 H 1.09002 * 109.47237 * 24.31118 * 10 9 8
32 32 H 1.08997 * 109.47564 * 144.31893 * 10 9 8
33 33 H 0.96696 * 114.00151 * 54.73072 * 13 12 11
34 34 H 0.96995 * 120.00178 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8930 1.0278 0.0000
4 6 2.0404 -0.7214 1.2504
5 6 1.3304 -2.0738 1.3871
6 6 1.4221 -2.7949 0.0653
7 6 1.2094 -4.1480 -0.1880
8 7 1.3931 -4.3559 -1.4689
9 7 1.7292 -3.1332 -2.0692
10 6 2.0176 -2.9195 -3.4895
11 6 1.7389 -2.1932 -1.1096
12 6 2.0396 -0.7222 -1.2528
13 8 3.4500 -0.5291 -1.3778
14 6 1.3428 -0.1781 -2.4733
15 1 0.4609 -0.6703 -2.8560
16 6 1.8311 0.9479 -3.1014
17 7 1.2490 1.3973 -4.1918
18 14 3.3196 1.8351 -2.4038
19 1 4.5599 1.1804 -2.8920
20 1 3.3020 3.2531 -2.8444
21 1 3.2802 1.7771 -0.9205
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5134 0.8903
24 1 -0.3634 0.5142 -0.8896
25 1 1.8344 -0.1125 2.1306
26 1 3.1150 -0.8825 1.1637
27 1 0.2837 -1.9144 1.6465
28 1 1.8147 -2.6667 2.1630
29 1 0.9395 -4.8953 0.5436
30 1 3.0950 -2.9548 -3.6508
31 1 1.5362 -3.6995 -4.0794
32 1 1.6363 -1.9452 -3.7952
33 1 3.8547 -1.0380 -2.0934
34 1 1.5928 2.1892 -4.6339
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260129240.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:46
Heat of formation + Delta-G solvation = 22.941961 kcal
Electronic energy + Delta-G solvation = -18166.933762 eV
Core-core repulsion = 15487.330299 eV
Total energy + Delta-G solvation = -2679.603463 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.00369 -37.54800 -35.05713 -32.78158 -32.15885 -29.88489 -28.97762 -26.43416
-25.93972 -24.16818 -21.85363 -20.65267 -20.05082 -17.47814 -17.20898 -16.40234
-15.18642 -14.90877 -14.54268 -14.11456 -13.80643 -13.27926 -13.07809 -12.93671
-12.43497 -12.05716 -11.81821 -11.75705 -11.55113 -11.40023 -11.07739 -10.76921
-10.50905 -10.24310 -10.03874 -9.92435 -9.70742 -9.13960 -8.66630 -8.59702
-8.48047 -7.54266 -6.28438 -4.41012 2.58429 3.25110 3.38865 3.40159
3.50068 3.65800 4.42269 4.97794 5.13941 5.30221 5.37756 5.67377
5.70784 5.76477 5.84668 5.88459 6.13462 6.17732 6.29103 6.31784
6.43941 6.49730 6.50739 6.66452 6.76374 6.87098 7.07631 7.14449
7.28945 7.34153 7.43376 7.76771 8.02148 8.38942 8.50893 8.68309
9.31312 10.79045
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026071 B = 0.013423 C = 0.010767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.738146 B = 2085.415971 C = 2599.982630
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.070 4.070
3 H 0.077 0.923
4 C -0.118 4.118
5 C -0.032 4.032
6 C -0.258 4.258
7 C 0.040 3.960
8 N -0.324 5.324
9 N -0.348 5.348
10 C 0.086 3.914
11 C 0.107 3.893
12 C 0.287 3.713
13 O -0.555 6.555
14 C -0.556 4.556
15 H 0.081 0.919
16 C 0.079 3.921
17 N -0.884 5.884
18 Si 0.942 3.058
19 H -0.293 1.293
20 H -0.326 1.326
21 H -0.263 1.263
22 H 0.051 0.949
23 H 0.037 0.963
24 H 0.072 0.928
25 H 0.053 0.947
26 H 0.062 0.938
27 H 0.063 0.937
28 H 0.056 0.944
29 H 0.171 0.829
30 H 0.061 0.939
31 H 0.073 0.927
32 H 0.128 0.872
33 H 0.365 0.635
34 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.543 -4.830 6.773 8.461
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.089 4.089
3 H 0.095 0.905
4 C -0.155 4.155
5 C -0.070 4.070
6 C -0.270 4.270
7 C -0.144 4.144
8 N -0.147 5.147
9 N -0.128 5.128
10 C -0.055 4.055
11 C -0.024 4.024
12 C 0.246 3.754
13 O -0.361 6.361
14 C -0.593 4.593
15 H 0.099 0.901
16 C -0.127 4.127
17 N -0.519 5.519
18 Si 0.778 3.222
19 H -0.221 1.221
20 H -0.258 1.258
21 H -0.189 1.189
22 H 0.070 0.930
23 H 0.056 0.944
24 H 0.091 0.909
25 H 0.072 0.928
26 H 0.081 0.919
27 H 0.081 0.919
28 H 0.075 0.925
29 H 0.188 0.812
30 H 0.080 0.920
31 H 0.092 0.908
32 H 0.146 0.854
33 H 0.213 0.787
34 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 1.445 -5.182 6.014 8.069
hybrid contribution 0.778 0.530 0.286 0.984
sum 2.223 -4.652 6.299 8.140
Atomic orbital electron populations
1.21747 0.94632 1.01522 1.01125 1.21283 0.96049 0.99497 0.92099
0.90464 1.21706 1.00348 0.95626 0.97852 1.19901 0.99880 0.94732
0.92511 1.19871 1.17614 0.93478 0.95995 1.23351 1.01331 0.96134
0.93605 1.77339 1.24463 1.04348 1.08559 1.48095 1.51916 1.04888
1.07899 1.22291 1.01131 1.06056 0.76070 1.22075 0.98129 0.94399
0.87800 1.18062 0.78517 0.83139 0.95705 1.86229 1.23874 1.68809
1.57206 1.21109 1.14546 1.13272 1.10368 0.90073 1.25057 0.97545
0.96114 0.93990 1.69941 1.40604 1.23506 1.17850 0.85808 0.81179
0.75040 0.80166 1.22059 1.25763 1.18871 0.93025 0.94386 0.90902
0.92776 0.91881 0.91885 0.92503 0.81179 0.92030 0.90798 0.85414
0.78746 0.92257
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.59 8.03 37.16 0.30 -2.29 16
2 C -0.07 -1.43 2.34 -90.39 -0.21 -1.64 16
3 H 0.08 1.69 5.71 -51.93 -0.30 1.39 16
4 C -0.12 -2.07 5.54 -26.48 -0.15 -2.21 16
5 C -0.03 -0.52 5.64 -27.63 -0.16 -0.68 16
6 C -0.26 -4.93 5.15 -105.05 -0.54 -5.47 16
7 C 0.04 0.72 12.00 -17.49 -0.21 0.51 16
8 N -0.32 -6.52 12.59 30.54 0.38 -6.14 16
9 N -0.35 -7.12 4.00 -63.88 -0.26 -7.38 16
10 C 0.09 1.55 11.13 59.85 0.67 2.22 16
11 C 0.11 2.24 5.31 -82.33 -0.44 1.80 16
12 C 0.29 6.24 0.35 -92.70 -0.03 6.21 16
13 O -0.55 -11.97 7.96 -35.23 -0.28 -12.25 16
14 C -0.56 -13.68 4.67 -34.44 -0.16 -13.84 16
15 H 0.08 2.23 7.47 -52.49 -0.39 1.83 16
16 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16
17 N -0.88 -24.56 13.96 55.43 0.77 -23.78 16
18 Si 0.94 22.36 24.45 -169.99 -4.16 18.21 16
19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
20 H -0.33 -8.03 7.11 56.52 0.40 -7.63 16
21 H -0.26 -6.17 5.19 56.52 0.29 -5.87 16
22 H 0.05 1.00 5.61 -51.93 -0.29 0.71 16
23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.07 1.58 6.97 -51.93 -0.36 1.22 16
25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
26 H 0.06 1.16 7.78 -51.93 -0.40 0.76 16
27 H 0.06 0.97 6.98 -51.93 -0.36 0.61 16
28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
29 H 0.17 2.42 8.06 -52.49 -0.42 2.00 16
30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
32 H 0.13 2.62 5.17 -51.93 -0.27 2.35 16
33 H 0.37 7.13 8.92 45.56 0.41 7.54 16
34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16
LS Contribution 259.67 15.07 3.91 3.91
Total: -1.00 -28.89 259.67 -4.40 -33.29
By element:
Atomic # 1 Polarization: 11.35 SS G_CDS: -3.75 Total: 7.60 kcal
Atomic # 6 Polarization: -12.43 SS G_CDS: -1.03 Total: -13.46 kcal
Atomic # 7 Polarization: -38.20 SS G_CDS: 0.90 Total: -37.30 kcal
Atomic # 8 Polarization: -11.97 SS G_CDS: -0.28 Total: -12.25 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -4.16 Total: 18.21 kcal
Total LS contribution 3.91 Total: 3.91 kcal
Total: -28.89 -4.40 -33.29 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260129240.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.231 kcal
(2) G-P(sol) polarization free energy of solvation -28.891 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.289 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.942 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds