Wall clock time and date at job start Mon Mar 30 2020 03:37:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.45413 * 2 1
4 4 C 1.53118 * 109.47381 * 119.98281 * 2 1 3
5 5 C 1.53360 * 109.50652 * 49.73970 * 4 2 1
6 6 C 1.50845 * 108.37802 * 49.96717 * 5 4 2
7 7 C 1.39294 * 127.90351 * 163.36369 * 6 5 4
8 8 N 1.31064 * 108.08131 * 180.08261 * 7 6 5
9 9 N 1.40294 * 108.27053 * 359.97438 * 8 7 6
10 10 C 1.46498 * 126.09536 * 179.97438 * 9 8 7
11 11 C 1.34333 * 107.81629 * 359.95275 * 9 8 7
12 12 C 1.50825 * 128.03345 * 180.10772 * 11 9 8
13 13 O 1.42897 * 109.68566 * 283.11712 * 12 11 9
14 14 C 1.50698 * 109.68236 * 43.63726 * 12 11 9
15 15 H 1.08000 * 120.00460 * 24.49592 * 14 12 11
16 16 C 1.37875 * 120.00167 * 204.50204 * 14 12 11
17 17 N 1.31516 * 120.00394 * 177.77139 * 16 14 12
18 18 Si 1.86804 * 119.99809 * 357.77409 * 16 14 12
19 19 H 1.48497 * 109.47123 * 84.29758 * 18 16 14
20 20 H 1.48499 * 109.46879 * 204.30027 * 18 16 14
21 21 H 1.48504 * 109.46852 * 324.29688 * 18 16 14
22 22 H 1.09001 * 109.46836 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.47046 * 299.97217 * 1 2 3
24 24 H 1.08990 * 109.47476 * 59.97312 * 1 2 3
25 25 H 1.08998 * 109.46447 * 289.73250 * 4 2 1
26 26 H 1.09005 * 109.47229 * 169.75185 * 4 2 1
27 27 H 1.09005 * 109.68293 * 290.24671 * 5 4 2
28 28 H 1.09001 * 109.71807 * 169.70633 * 5 4 2
29 29 H 1.08002 * 125.95483 * 0.11837 * 7 6 5
30 30 H 1.09005 * 109.47063 * 264.31196 * 10 9 8
31 31 H 1.09002 * 109.47237 * 24.31118 * 10 9 8
32 32 H 1.08997 * 109.47564 * 144.31893 * 10 9 8
33 33 H 0.96696 * 114.00151 * 54.73072 * 13 12 11
34 34 H 0.96995 * 120.00178 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8930 1.0278 0.0000
4 6 2.0404 -0.7214 1.2504
5 6 1.3304 -2.0738 1.3871
6 6 1.4221 -2.7949 0.0653
7 6 1.2094 -4.1480 -0.1880
8 7 1.3931 -4.3559 -1.4689
9 7 1.7292 -3.1332 -2.0692
10 6 2.0176 -2.9195 -3.4895
11 6 1.7389 -2.1932 -1.1096
12 6 2.0396 -0.7222 -1.2528
13 8 3.4500 -0.5291 -1.3778
14 6 1.3428 -0.1781 -2.4733
15 1 0.4609 -0.6703 -2.8560
16 6 1.8311 0.9479 -3.1014
17 7 1.2490 1.3973 -4.1918
18 14 3.3196 1.8351 -2.4038
19 1 4.5599 1.1804 -2.8920
20 1 3.3020 3.2531 -2.8444
21 1 3.2802 1.7771 -0.9205
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5134 0.8903
24 1 -0.3634 0.5142 -0.8896
25 1 1.8344 -0.1125 2.1306
26 1 3.1150 -0.8825 1.1637
27 1 0.2837 -1.9144 1.6465
28 1 1.8147 -2.6667 2.1630
29 1 0.9395 -4.8953 0.5436
30 1 3.0950 -2.9548 -3.6508
31 1 1.5362 -3.6995 -4.0794
32 1 1.6363 -1.9452 -3.7952
33 1 3.8547 -1.0380 -2.0934
34 1 1.5928 2.1892 -4.6339
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260129240.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:45
Heat of formation + Delta-G solvation = 2.245794 kcal
Electronic energy + Delta-G solvation = -18167.831215 eV
Core-core repulsion = 15487.330299 eV
Total energy + Delta-G solvation = -2680.500916 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.51119 -39.16997 -36.61358 -34.60547 -33.85531 -31.39448 -30.54265 -28.13055
-27.46697 -25.80716 -23.43346 -22.21242 -21.53512 -19.16429 -18.97118 -17.98274
-17.05296 -16.46541 -16.12351 -15.67107 -15.34237 -14.91797 -14.62400 -14.51444
-13.96332 -13.80615 -13.47563 -13.32018 -13.04336 -12.94818 -12.61599 -12.49934
-12.30330 -11.97697 -11.54806 -11.40895 -11.25685 -11.02034 -10.55251 -10.30386
-10.09956 -9.01422 -8.32870 -6.44162 1.04786 1.47733 1.53291 1.72942
1.79056 1.98784 2.44440 3.00256 3.53123 3.84224 3.89647 4.21468
4.28248 4.37926 4.43558 4.46853 4.64087 4.68686 4.82046 4.94401
4.99581 5.04919 5.11304 5.14711 5.28041 5.39019 5.49137 5.56999
5.65528 5.78156 5.95651 6.03287 6.25755 6.55627 6.82110 6.93672
7.30050 8.78519
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026071 B = 0.013423 C = 0.010767
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.738146 B = 2085.415971 C = 2599.982630
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.077 4.077
3 H 0.060 0.940
4 C -0.112 4.112
5 C -0.029 4.029
6 C -0.257 4.257
7 C 0.044 3.956
8 N -0.342 5.342
9 N -0.362 5.362
10 C 0.088 3.912
11 C 0.077 3.923
12 C 0.288 3.712
13 O -0.558 6.558
14 C -0.531 4.531
15 H 0.043 0.957
16 C 0.038 3.962
17 N -0.929 5.929
18 Si 0.990 3.010
19 H -0.285 1.285
20 H -0.340 1.340
21 H -0.255 1.255
22 H 0.050 0.950
23 H 0.069 0.931
24 H 0.037 0.963
25 H 0.082 0.918
26 H 0.054 0.946
27 H 0.077 0.923
28 H 0.087 0.913
29 H 0.212 0.788
30 H 0.081 0.919
31 H 0.088 0.912
32 H 0.097 0.903
33 H 0.372 0.628
34 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.090 -6.052 9.431 11.399
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.096 4.096
3 H 0.079 0.921
4 C -0.149 4.149
5 C -0.067 4.067
6 C -0.269 4.269
7 C -0.139 4.139
8 N -0.165 5.165
9 N -0.143 5.143
10 C -0.053 4.053
11 C -0.053 4.053
12 C 0.247 3.753
13 O -0.365 6.365
14 C -0.568 4.568
15 H 0.061 0.939
16 C -0.163 4.163
17 N -0.567 5.567
18 Si 0.825 3.175
19 H -0.213 1.213
20 H -0.273 1.273
21 H -0.181 1.181
22 H 0.069 0.931
23 H 0.088 0.912
24 H 0.056 0.944
25 H 0.101 0.899
26 H 0.072 0.928
27 H 0.096 0.904
28 H 0.106 0.894
29 H 0.229 0.771
30 H 0.099 0.901
31 H 0.107 0.893
32 H 0.115 0.885
33 H 0.221 0.779
34 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 2.001 -6.420 8.683 10.982
hybrid contribution 0.542 0.821 -0.536 1.120
sum 2.542 -5.599 8.146 10.206
Atomic orbital electron populations
1.21641 0.94132 1.01332 1.00996 1.21315 0.96477 0.98766 0.93075
0.92124 1.21657 0.99751 0.96459 0.97059 1.20009 1.00975 0.94001
0.91746 1.20315 1.16056 0.93986 0.96514 1.24017 0.99764 0.96671
0.93491 1.77312 1.25066 1.04330 1.09797 1.48277 1.52544 1.05116
1.08314 1.22211 1.02386 1.04797 0.75906 1.22036 1.00214 0.93963
0.89084 1.17967 0.78147 0.84277 0.94940 1.86179 1.23703 1.69120
1.57510 1.21113 1.12786 1.12006 1.10906 0.93868 1.25613 0.99553
0.96975 0.94174 1.70046 1.42556 1.24453 1.19631 0.85025 0.79170
0.73407 0.79884 1.21268 1.27297 1.18094 0.93117 0.91200 0.94350
0.89894 0.92752 0.90433 0.89449 0.77145 0.90079 0.89325 0.88465
0.77949 0.92492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.63 8.03 71.98 0.58 -4.05 16
2 C -0.08 -3.01 2.34 -10.65 -0.02 -3.04 16
3 H 0.06 2.56 5.71 -2.39 -0.01 2.54 16
4 C -0.11 -3.50 5.54 30.75 0.17 -3.33 16
5 C -0.03 -0.83 5.64 30.01 0.17 -0.66 16
6 C -0.26 -9.02 5.15 -20.14 -0.10 -9.13 16
7 C 0.04 1.45 12.00 85.06 1.02 2.47 16
8 N -0.34 -13.07 12.59 -57.28 -0.72 -13.79 16
9 N -0.36 -14.52 4.00 -356.00 -1.43 -15.94 16
10 C 0.09 3.21 11.13 127.77 1.42 4.63 16
11 C 0.08 3.14 5.31 41.64 0.22 3.36 16
12 C 0.29 12.35 0.35 -12.14 0.00 12.34 16
13 O -0.56 -23.44 7.96 -148.98 -1.19 -24.63 16
14 C -0.53 -26.80 4.67 25.60 0.12 -26.68 16
15 H 0.04 2.49 7.47 -2.91 -0.02 2.47 16
16 C 0.04 2.00 5.47 84.65 0.46 2.46 16
17 N -0.93 -53.62 13.96 21.45 0.30 -53.32 16
18 Si 0.99 46.42 24.45 68.60 1.68 48.10 16
19 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16
20 H -0.34 -16.65 7.11 99.48 0.71 -15.95 16
21 H -0.26 -11.58 5.19 99.48 0.52 -11.06 16
22 H 0.05 1.88 5.61 -2.39 -0.01 1.87 16
23 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16
24 H 0.04 1.67 6.97 -2.39 -0.02 1.65 16
25 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16
26 H 0.05 1.81 7.78 -2.38 -0.02 1.79 16
27 H 0.08 2.01 6.98 -2.38 -0.02 1.99 16
28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16
29 H 0.21 4.93 8.06 -2.91 -0.02 4.91 16
30 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16
31 H 0.09 2.88 8.14 -2.39 -0.02 2.87 16
32 H 0.10 4.16 5.17 -2.39 -0.01 4.15 16
33 H 0.37 14.25 8.92 -74.06 -0.66 13.59 16
34 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16
Total: -1.00 -62.80 259.67 2.94 -59.86
By element:
Atomic # 1 Polarization: 21.08 SS G_CDS: 0.27 Total: 21.35 kcal
Atomic # 6 Polarization: -25.66 SS G_CDS: 4.03 Total: -21.63 kcal
Atomic # 7 Polarization: -81.20 SS G_CDS: -1.85 Total: -83.05 kcal
Atomic # 8 Polarization: -23.44 SS G_CDS: -1.19 Total: -24.63 kcal
Atomic # 14 Polarization: 46.42 SS G_CDS: 1.68 Total: 48.10 kcal
Total: -62.80 2.94 -59.86 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260129240.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.106 kcal
(2) G-P(sol) polarization free energy of solvation -62.800 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.695 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.860 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.246 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds