Wall clock time and date at job start Mon Mar 30 2020 03:37:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 109.45467 * 2 1
4 4 C 1.53118 * 109.46275 * 240.01350 * 2 1 3
5 5 C 1.53359 * 109.50526 * 169.71653 * 4 2 1
6 6 C 1.50832 * 108.37978 * 49.96557 * 5 4 2
7 7 C 1.39299 * 127.90008 * 163.35919 * 6 5 4
8 8 N 1.31075 * 108.07952 * 180.08370 * 7 6 5
9 9 N 1.40296 * 108.26496 * 0.02562 * 8 7 6
10 10 C 1.46498 * 126.08508 * 179.97438 * 9 8 7
11 11 C 1.34317 * 107.82028 * 359.95127 * 9 8 7
12 12 C 1.50832 * 128.03468 * 180.11469 * 11 9 8
13 13 O 1.42897 * 109.68038 * 283.15218 * 12 11 9
14 14 C 1.50700 * 109.67962 * 43.66415 * 12 11 9
15 15 H 1.07996 * 120.00382 * 242.97437 * 14 12 11
16 16 C 1.37875 * 119.99902 * 62.97919 * 14 12 11
17 17 N 1.31519 * 120.00192 * 348.92247 * 16 14 12
18 18 Si 1.86801 * 120.00049 * 168.92393 * 16 14 12
19 19 H 1.48504 * 109.47370 * 269.99777 * 18 16 14
20 20 H 1.48502 * 109.47153 * 149.99750 * 18 16 14
21 21 H 1.48501 * 109.47042 * 30.00036 * 18 16 14
22 22 H 1.09009 * 109.46760 * 300.02227 * 1 2 3
23 23 H 1.08992 * 109.47066 * 60.01981 * 1 2 3
24 24 H 1.08992 * 109.47119 * 180.02562 * 1 2 3
25 25 H 1.09006 * 109.46014 * 49.70569 * 4 2 1
26 26 H 1.09002 * 109.46433 * 289.72823 * 4 2 1
27 27 H 1.09002 * 109.68028 * 290.23845 * 5 4 2
28 28 H 1.09001 * 109.68285 * 169.69006 * 5 4 2
29 29 H 1.07997 * 125.95974 * 0.04781 * 7 6 5
30 30 H 1.08998 * 109.47553 * 264.46688 * 10 9 8
31 31 H 1.09001 * 109.47705 * 24.46910 * 10 9 8
32 32 H 1.09005 * 109.47427 * 144.46630 * 10 9 8
33 33 H 0.96702 * 114.00468 * 56.41822 * 13 12 11
34 34 H 0.96994 * 119.99902 * 0.99142 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0278 0.0000
4 6 2.0402 -0.7215 -1.2504
5 6 3.5519 -0.5025 -1.3871
6 6 4.2012 -0.8290 -0.0654
7 6 5.5479 -1.0792 0.1876
8 7 5.6829 -1.3218 1.4687
9 7 4.4179 -1.2325 2.0687
10 6 4.1205 -1.4336 3.4890
11 6 3.5283 -0.9292 1.1092
12 6 2.0408 -0.7239 1.2523
13 8 1.3902 -1.9899 1.3780
14 6 1.7593 0.1147 2.4723
15 1 1.1910 -0.2986 3.2923
16 6 2.2273 1.4098 2.5417
17 7 3.0958 1.8436 1.6544
18 14 1.6280 2.5482 3.8960
19 1 0.4178 3.2740 3.4332
20 1 2.6947 3.5263 4.2286
21 1 1.2950 1.7495 5.1028
22 1 -0.3633 0.5142 0.8899
23 1 -0.3633 0.5135 -0.8901
24 1 -0.3633 -1.0276 0.0005
25 1 1.5345 -0.3244 -2.1306
26 1 1.8341 -1.7884 -1.1637
27 1 3.7501 0.5375 -1.6466
28 1 3.9491 -1.1570 -2.1630
29 1 6.3422 -1.0748 -0.5441
30 1 3.7984 -2.4623 3.6508
31 1 5.0153 -1.2361 4.0793
32 1 3.3264 -0.7520 3.7941
33 1 1.7182 -2.5298 2.1100
34 1 3.3961 1.2569 0.9427
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260129244.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:51
Heat of formation + Delta-G solvation = 16.790669 kcal
Electronic energy + Delta-G solvation = -18294.052243 eV
Core-core repulsion = 15614.182040 eV
Total energy + Delta-G solvation = -2679.870203 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.77085 -37.31368 -34.49363 -33.17896 -31.75612 -30.30455 -28.35220 -26.08150
-25.58572 -23.82412 -21.76733 -20.07313 -19.74949 -18.22891 -17.63451 -16.08175
-14.82192 -14.50367 -14.15658 -13.77218 -13.65527 -13.32153 -12.83949 -12.76432
-12.23890 -12.14651 -11.79159 -11.69717 -11.32339 -11.00327 -10.88530 -10.67117
-10.37723 -10.24739 -9.93418 -9.75251 -9.68168 -9.55246 -8.57267 -8.52360
-8.15195 -7.32552 -6.46991 -4.36315 2.84230 3.30906 3.32423 3.47263
3.48855 3.66358 4.33425 5.06237 5.36979 5.48680 5.63216 5.79074
5.82923 5.85765 5.89819 6.04719 6.25986 6.35765 6.41629 6.46553
6.51915 6.63312 6.67232 6.81648 6.86148 6.97682 7.20902 7.26672
7.47151 7.57330 7.83828 7.97867 8.15873 8.57194 8.65218 8.67487
9.38291 10.80411
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021290 B = 0.014737 C = 0.011464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1314.846124 B = 1899.499482 C = 2441.926065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.076 4.076
3 H 0.091 0.909
4 C -0.116 4.116
5 C -0.032 4.032
6 C -0.268 4.268
7 C 0.042 3.958
8 N -0.330 5.330
9 N -0.345 5.345
10 C 0.094 3.906
11 C 0.113 3.887
12 C 0.304 3.696
13 O -0.560 6.560
14 C -0.635 4.635
15 H 0.063 0.937
16 C 0.035 3.965
17 N -0.888 5.888
18 Si 1.062 2.938
19 H -0.283 1.283
20 H -0.284 1.284
21 H -0.287 1.287
22 H 0.060 0.940
23 H 0.032 0.968
24 H 0.049 0.951
25 H 0.051 0.949
26 H 0.059 0.941
27 H 0.059 0.941
28 H 0.055 0.945
29 H 0.168 0.832
30 H 0.056 0.944
31 H 0.071 0.929
32 H 0.118 0.882
33 H 0.357 0.643
34 H 0.290 0.710
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.017 -3.966 -1.339 4.308
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.095 4.095
3 H 0.109 0.891
4 C -0.153 4.153
5 C -0.071 4.071
6 C -0.280 4.280
7 C -0.142 4.142
8 N -0.153 5.153
9 N -0.124 5.124
10 C -0.048 4.048
11 C -0.019 4.019
12 C 0.262 3.738
13 O -0.363 6.363
14 C -0.672 4.672
15 H 0.081 0.919
16 C -0.175 4.175
17 N -0.523 5.523
18 Si 0.890 3.110
19 H -0.210 1.210
20 H -0.210 1.210
21 H -0.213 1.213
22 H 0.079 0.921
23 H 0.051 0.949
24 H 0.068 0.932
25 H 0.070 0.930
26 H 0.078 0.922
27 H 0.077 0.923
28 H 0.074 0.926
29 H 0.185 0.815
30 H 0.074 0.926
31 H 0.089 0.911
32 H 0.136 0.864
33 H 0.202 0.798
34 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -0.367 -2.520 -0.165 2.552
hybrid contribution -0.119 -1.416 -0.693 1.581
sum -0.486 -3.936 -0.859 4.058
Atomic orbital electron populations
1.21507 0.95448 1.00854 1.00187 1.21245 0.95791 1.00481 0.92011
0.89063 1.21716 0.94848 1.00865 0.97887 1.19855 0.94524 0.99913
0.92758 1.19822 0.93193 1.18926 0.96027 1.23269 0.96458 1.00913
0.93582 1.77269 1.01997 1.27585 1.08436 1.47833 1.04287 1.52823
1.07473 1.22094 1.03467 1.02267 0.76981 1.22541 0.96635 0.95256
0.87421 1.17732 0.79462 0.81423 0.95179 1.86411 1.64401 1.31021
1.54481 1.22312 1.40525 1.00566 1.03808 0.91877 1.25722 0.93534
0.96744 1.01488 1.70716 1.25053 1.41715 1.14828 0.83643 0.76479
0.75945 0.74981 1.20956 1.21014 1.21272 0.92124 0.94907 0.93204
0.93017 0.92175 0.92289 0.92600 0.81503 0.92578 0.91065 0.86388
0.79833 0.89523
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.52 8.79 37.16 0.33 -2.20 16
2 C -0.08 -1.70 1.66 -90.35 -0.15 -1.85 16
3 H 0.09 2.30 5.52 -51.93 -0.29 2.01 16
4 C -0.12 -2.28 5.19 -26.48 -0.14 -2.42 16
5 C -0.03 -0.63 6.28 -27.63 -0.17 -0.80 16
6 C -0.27 -5.96 5.09 -105.06 -0.54 -6.50 16
7 C 0.04 0.88 12.00 -17.48 -0.21 0.67 16
8 N -0.33 -7.53 12.59 30.55 0.38 -7.15 16
9 N -0.34 -7.84 4.00 -63.88 -0.26 -8.10 16
10 C 0.09 1.80 11.13 59.85 0.67 2.47 16
11 C 0.11 2.64 3.96 -82.33 -0.33 2.31 16
12 C 0.30 7.05 0.44 -92.65 -0.04 7.01 16
13 O -0.56 -12.24 11.56 -35.23 -0.41 -12.65 16
14 C -0.63 -15.61 4.85 -34.44 -0.17 -15.78 16
15 H 0.06 1.55 7.84 -52.49 -0.41 1.14 16
16 C 0.03 0.89 4.94 -17.82 -0.09 0.80 16
17 N -0.89 -24.69 12.51 55.43 0.69 -23.99 16
18 Si 1.06 23.22 29.92 -169.99 -5.09 18.14 16
19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16
20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
21 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16
22 H 0.06 1.32 7.59 -51.92 -0.39 0.92 16
23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
24 H 0.05 1.00 7.48 -51.93 -0.39 0.61 16
25 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16
26 H 0.06 1.21 7.78 -51.93 -0.40 0.80 16
27 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16
28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.17 2.87 8.06 -52.49 -0.42 2.45 16
30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16
32 H 0.12 2.44 5.45 -51.93 -0.28 2.16 16
33 H 0.36 6.86 9.03 45.56 0.41 7.27 16
34 H 0.29 8.01 3.89 -40.82 -0.16 7.85 16
LS Contribution 267.69 15.07 4.03 4.03
Total: -1.00 -29.56 267.69 -5.14 -34.70
By element:
Atomic # 1 Polarization: 14.96 SS G_CDS: -3.67 Total: 11.29 kcal
Atomic # 6 Polarization: -15.44 SS G_CDS: -0.84 Total: -16.28 kcal
Atomic # 7 Polarization: -40.06 SS G_CDS: 0.82 Total: -39.23 kcal
Atomic # 8 Polarization: -12.24 SS G_CDS: -0.41 Total: -12.65 kcal
Atomic # 14 Polarization: 23.22 SS G_CDS: -5.09 Total: 18.14 kcal
Total LS contribution 4.03 Total: 4.03 kcal
Total: -29.56 -5.14 -34.70 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260129244.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.489 kcal
(2) G-P(sol) polarization free energy of solvation -29.559 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.930 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.139 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.699 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.791 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds