Wall clock time and date at job start Mon Mar 30 2020 03:37:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 109.45467 * 2 1
4 4 C 1.53118 * 109.46275 * 240.01350 * 2 1 3
5 5 C 1.53359 * 109.50526 * 169.71653 * 4 2 1
6 6 C 1.50832 * 108.37978 * 49.96557 * 5 4 2
7 7 C 1.39299 * 127.90008 * 163.35919 * 6 5 4
8 8 N 1.31075 * 108.07952 * 180.08370 * 7 6 5
9 9 N 1.40296 * 108.26496 * 0.02562 * 8 7 6
10 10 C 1.46498 * 126.08508 * 179.97438 * 9 8 7
11 11 C 1.34317 * 107.82028 * 359.95127 * 9 8 7
12 12 C 1.50832 * 128.03468 * 180.11469 * 11 9 8
13 13 O 1.42897 * 109.68038 * 283.15218 * 12 11 9
14 14 C 1.50700 * 109.67962 * 43.66415 * 12 11 9
15 15 H 1.07996 * 120.00382 * 242.97437 * 14 12 11
16 16 C 1.37875 * 119.99902 * 62.97919 * 14 12 11
17 17 N 1.31519 * 120.00192 * 348.92247 * 16 14 12
18 18 Si 1.86801 * 120.00049 * 168.92393 * 16 14 12
19 19 H 1.48504 * 109.47370 * 269.99777 * 18 16 14
20 20 H 1.48502 * 109.47153 * 149.99750 * 18 16 14
21 21 H 1.48501 * 109.47042 * 30.00036 * 18 16 14
22 22 H 1.09009 * 109.46760 * 300.02227 * 1 2 3
23 23 H 1.08992 * 109.47066 * 60.01981 * 1 2 3
24 24 H 1.08992 * 109.47119 * 180.02562 * 1 2 3
25 25 H 1.09006 * 109.46014 * 49.70569 * 4 2 1
26 26 H 1.09002 * 109.46433 * 289.72823 * 4 2 1
27 27 H 1.09002 * 109.68028 * 290.23845 * 5 4 2
28 28 H 1.09001 * 109.68285 * 169.69006 * 5 4 2
29 29 H 1.07997 * 125.95974 * 0.04781 * 7 6 5
30 30 H 1.08998 * 109.47553 * 264.46688 * 10 9 8
31 31 H 1.09001 * 109.47705 * 24.46910 * 10 9 8
32 32 H 1.09005 * 109.47427 * 144.46630 * 10 9 8
33 33 H 0.96702 * 114.00468 * 56.41822 * 13 12 11
34 34 H 0.96994 * 119.99902 * 0.99142 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0278 0.0000
4 6 2.0402 -0.7215 -1.2504
5 6 3.5519 -0.5025 -1.3871
6 6 4.2012 -0.8290 -0.0654
7 6 5.5479 -1.0792 0.1876
8 7 5.6829 -1.3218 1.4687
9 7 4.4179 -1.2325 2.0687
10 6 4.1205 -1.4336 3.4890
11 6 3.5283 -0.9292 1.1092
12 6 2.0408 -0.7239 1.2523
13 8 1.3902 -1.9899 1.3780
14 6 1.7593 0.1147 2.4723
15 1 1.1910 -0.2986 3.2923
16 6 2.2273 1.4098 2.5417
17 7 3.0958 1.8436 1.6544
18 14 1.6280 2.5482 3.8960
19 1 0.4178 3.2740 3.4332
20 1 2.6947 3.5263 4.2286
21 1 1.2950 1.7495 5.1028
22 1 -0.3633 0.5142 0.8899
23 1 -0.3633 0.5135 -0.8901
24 1 -0.3633 -1.0276 0.0005
25 1 1.5345 -0.3244 -2.1306
26 1 1.8341 -1.7884 -1.1637
27 1 3.7501 0.5375 -1.6466
28 1 3.9491 -1.1570 -2.1630
29 1 6.3422 -1.0748 -0.5441
30 1 3.7984 -2.4623 3.6508
31 1 5.0153 -1.2361 4.0793
32 1 3.3264 -0.7520 3.7941
33 1 1.7182 -2.5298 2.1100
34 1 3.3961 1.2569 0.9427
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260129244.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:51
Heat of formation + Delta-G solvation = -3.109045 kcal
Electronic energy + Delta-G solvation = -18294.915160 eV
Core-core repulsion = 15614.182040 eV
Total energy + Delta-G solvation = -2680.733119 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-42.44288 -39.03009 -36.14513 -35.00605 -33.46173 -31.95551 -30.03093 -27.84807
-27.24625 -25.58124 -23.41549 -21.76134 -21.41685 -19.97272 -19.46474 -17.75209
-16.54655 -16.17245 -15.87508 -15.46989 -15.35410 -14.98853 -14.47312 -14.36102
-13.85295 -13.82031 -13.43493 -13.32605 -12.97248 -12.72043 -12.61967 -12.28987
-12.11280 -11.98324 -11.58108 -11.48302 -11.30871 -11.25436 -10.46019 -10.25581
-9.92073 -9.03142 -8.42584 -6.33780 1.14171 1.54089 1.58223 1.75223
1.87410 2.01255 2.53937 3.15777 3.71923 3.88970 3.99008 4.18608
4.23069 4.37313 4.42484 4.45085 4.62940 4.75347 4.83430 4.90750
4.94483 4.99646 5.09052 5.20068 5.24427 5.35635 5.54771 5.57989
5.74575 5.96822 6.01567 6.14486 6.39743 6.61962 6.93265 6.98856
7.47925 8.83294
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021290 B = 0.014737 C = 0.011464
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1314.846124 B = 1899.499482 C = 2441.926065
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.081 4.081
3 H 0.062 0.938
4 C -0.109 4.109
5 C -0.031 4.031
6 C -0.283 4.283
7 C 0.038 3.962
8 N -0.350 5.350
9 N -0.356 5.356
10 C 0.089 3.911
11 C 0.092 3.908
12 C 0.301 3.699
13 O -0.563 6.563
14 C -0.627 4.627
15 H 0.058 0.942
16 C -0.002 4.002
17 N -0.923 5.923
18 Si 1.096 2.904
19 H -0.277 1.277
20 H -0.295 1.295
21 H -0.267 1.267
22 H 0.041 0.959
23 H 0.055 0.945
24 H 0.052 0.948
25 H 0.076 0.924
26 H 0.056 0.944
27 H 0.055 0.945
28 H 0.086 0.914
29 H 0.203 0.797
30 H 0.084 0.916
31 H 0.082 0.918
32 H 0.101 0.899
33 H 0.367 0.633
34 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.266 -4.606 -1.863 5.127
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.101 4.101
3 H 0.080 0.920
4 C -0.146 4.146
5 C -0.069 4.069
6 C -0.295 4.295
7 C -0.145 4.145
8 N -0.173 5.173
9 N -0.136 5.136
10 C -0.052 4.052
11 C -0.039 4.039
12 C 0.259 3.741
13 O -0.367 6.367
14 C -0.664 4.664
15 H 0.076 0.924
16 C -0.206 4.206
17 N -0.560 5.560
18 Si 0.920 3.080
19 H -0.202 1.202
20 H -0.221 1.221
21 H -0.191 1.191
22 H 0.060 0.940
23 H 0.074 0.926
24 H 0.071 0.929
25 H 0.095 0.905
26 H 0.075 0.925
27 H 0.074 0.926
28 H 0.104 0.896
29 H 0.220 0.780
30 H 0.103 0.897
31 H 0.100 0.900
32 H 0.119 0.881
33 H 0.213 0.787
34 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -0.632 -3.187 -0.672 3.318
hybrid contribution -0.041 -1.271 -0.520 1.374
sum -0.673 -4.458 -1.192 4.663
Atomic orbital electron populations
1.21443 0.94404 1.01064 1.00431 1.21210 0.96715 0.99002 0.93125
0.92003 1.21656 0.95255 1.00268 0.97468 1.19931 0.94259 1.00383
0.92352 1.20299 0.93793 1.18454 0.96923 1.23874 0.97172 0.99741
0.93710 1.77211 1.02323 1.28429 1.09369 1.48119 1.04209 1.52970
1.08325 1.22205 1.03488 1.03544 0.75960 1.22631 0.96733 0.96244
0.88303 1.17705 0.79799 0.81546 0.95039 1.86371 1.64471 1.30771
1.55132 1.22461 1.39233 1.00615 1.04134 0.92386 1.26656 0.93210
0.98286 1.02406 1.70784 1.27080 1.42129 1.16013 0.83192 0.75929
0.74784 0.74044 1.20248 1.22141 1.19135 0.94028 0.92562 0.92862
0.90519 0.92497 0.92616 0.89556 0.77999 0.89730 0.89967 0.88074
0.78685 0.90201
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.63 8.79 71.98 0.63 -4.00 16
2 C -0.08 -3.55 1.66 -10.62 -0.02 -3.57 16
3 H 0.06 3.12 5.52 -2.39 -0.01 3.10 16
4 C -0.11 -4.07 5.19 30.75 0.16 -3.91 16
5 C -0.03 -1.14 6.28 30.01 0.19 -0.96 16
6 C -0.28 -12.22 5.09 -20.15 -0.10 -12.32 16
7 C 0.04 1.56 12.00 85.06 1.02 2.58 16
8 N -0.35 -15.61 12.59 -57.27 -0.72 -16.33 16
9 N -0.36 -15.96 4.00 -356.01 -1.42 -17.38 16
10 C 0.09 3.36 11.13 127.77 1.42 4.78 16
11 C 0.09 4.25 3.96 41.64 0.17 4.42 16
12 C 0.30 13.78 0.44 -12.11 -0.01 13.77 16
13 O -0.56 -24.02 11.56 -148.98 -1.72 -25.75 16
14 C -0.63 -30.70 4.85 25.60 0.12 -30.58 16
15 H 0.06 2.83 7.84 -2.91 -0.02 2.81 16
16 C 0.00 -0.08 4.94 84.65 0.42 0.34 16
17 N -0.92 -51.77 12.51 21.45 0.27 -51.50 16
18 Si 1.10 46.71 29.92 68.60 2.05 48.76 16
19 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16
20 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16
21 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16
22 H 0.04 1.77 7.59 -2.38 -0.02 1.75 16
23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
24 H 0.05 2.05 7.48 -2.39 -0.02 2.03 16
25 H 0.08 2.45 8.11 -2.38 -0.02 2.43 16
26 H 0.06 2.15 7.78 -2.39 -0.02 2.14 16
27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
28 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16
29 H 0.20 6.42 8.06 -2.91 -0.02 6.40 16
30 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16
31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16
32 H 0.10 4.16 5.45 -2.38 -0.01 4.15 16
33 H 0.37 13.73 9.03 -74.06 -0.67 13.06 16
34 H 0.28 15.83 3.89 -92.71 -0.36 15.47 16
Total: -1.00 -62.21 267.69 3.30 -58.91
By element:
Atomic # 1 Polarization: 31.90 SS G_CDS: 0.85 Total: 32.74 kcal
Atomic # 6 Polarization: -33.46 SS G_CDS: 4.01 Total: -29.45 kcal
Atomic # 7 Polarization: -83.34 SS G_CDS: -1.88 Total: -85.22 kcal
Atomic # 8 Polarization: -24.02 SS G_CDS: -1.72 Total: -25.75 kcal
Atomic # 14 Polarization: 46.71 SS G_CDS: 2.05 Total: 48.76 kcal
Total: -62.21 3.30 -58.91 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260129244.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.796 kcal
(2) G-P(sol) polarization free energy of solvation -62.210 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.414 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.109 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds