Wall clock time and date at job start Mon Mar 30 2020 03:38:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.42762 * 2 1
4 4 C 1.53108 * 109.43314 * 119.89869 * 2 1 3
5 5 C 1.53547 * 109.52382 * 50.16787 * 4 2 1
6 6 C 1.50084 * 108.23203 * 49.24162 * 5 4 2
7 7 C 1.40077 * 130.52326 * 163.81333 * 6 5 4
8 8 N 1.30691 * 105.96584 * 180.22593 * 7 6 5
9 9 O 1.21462 * 111.69134 * 359.97438 * 8 7 6
10 10 C 1.33166 * 111.27440 * 359.91852 * 9 8 7
11 11 C 1.50558 * 129.73604 * 180.41689 * 10 9 8
12 12 C 1.50702 * 109.69838 * 282.97396 * 11 10 9
13 13 H 1.07999 * 119.99873 * 357.56379 * 12 11 10
14 14 C 1.37876 * 120.00133 * 177.56125 * 12 11 10
15 15 N 1.31515 * 120.00240 * 6.52588 * 14 12 11
16 16 Si 1.86801 * 120.00073 * 186.52856 * 14 12 11
17 17 H 1.48501 * 109.47353 * 59.99757 * 16 14 12
18 18 H 1.48501 * 109.47125 * 179.97438 * 16 14 12
19 19 H 1.48502 * 109.47184 * 299.99997 * 16 14 12
20 20 C 1.52998 * 109.69811 * 43.56803 * 11 10 9
21 21 N 1.46904 * 109.47138 * 293.93495 * 20 11 10
22 22 H 1.09009 * 109.47174 * 300.09744 * 1 2 3
23 23 H 1.09001 * 109.47547 * 60.10098 * 1 2 3
24 24 H 1.08998 * 109.47570 * 180.10520 * 1 2 3
25 25 H 1.08999 * 109.46003 * 290.15725 * 4 2 1
26 26 H 1.08993 * 109.45433 * 170.17904 * 4 2 1
27 27 H 1.09008 * 109.71018 * 289.55890 * 5 4 2
28 28 H 1.09000 * 109.74587 * 168.94792 * 5 4 2
29 29 H 1.07998 * 127.01411 * 0.21183 * 7 6 5
30 30 H 0.96998 * 120.00103 * 180.02562 * 15 14 12
31 31 H 1.09000 * 109.47020 * 53.93305 * 20 11 10
32 32 H 1.08998 * 109.47596 * 173.93342 * 20 11 10
33 33 H 1.00897 * 110.99886 * 56.04652 * 21 20 11
34 34 H 1.00900 * 110.99385 * 179.97438 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8925 1.0280 0.0000
4 6 2.0394 -0.7197 1.2517
5 6 1.3359 -2.0781 1.3846
6 6 1.4230 -2.7833 0.0627
7 6 1.2193 -4.1297 -0.2658
8 7 1.4240 -4.2206 -1.5534
9 8 1.7151 -3.1458 -2.0386
10 6 1.7383 -2.1883 -1.1134
11 6 2.0369 -0.7195 -1.2557
12 6 3.5237 -0.5142 -1.3908
13 1 4.1929 -1.3601 -1.3359
14 6 4.0298 0.7537 -1.5845
15 7 3.2313 1.7969 -1.5235
16 14 5.8496 0.9897 -1.9338
17 1 6.2131 0.2644 -3.1776
18 1 6.1376 2.4367 -2.1030
19 1 6.6448 0.4556 -0.7991
20 6 1.3247 -0.1659 -2.4914
21 7 1.8983 -0.7726 -3.7001
22 1 -0.3634 0.5154 0.8892
23 1 -0.3634 0.5123 -0.8909
24 1 -0.3634 -1.0276 0.0019
25 1 1.8262 -0.1128 2.1316
26 1 3.1151 -0.8744 1.1690
27 1 0.2901 -1.9259 1.6519
28 1 1.8286 -2.6744 2.1526
29 1 0.9486 -4.9295 0.4076
30 1 3.5872 2.6888 -1.6601
31 1 0.2623 -0.4028 -2.4351
32 1 1.4541 0.9157 -2.5314
33 1 1.8486 -1.7795 -3.6577
34 1 1.4440 -0.4231 -4.5305
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260171727.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:03
Heat of formation + Delta-G solvation = 56.041700 kcal
Electronic energy + Delta-G solvation = -18155.504608 eV
Core-core repulsion = 15477.336457 eV
Total energy + Delta-G solvation = -2678.168151 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-44.13502 -38.22160 -34.55151 -32.30521 -32.04906 -30.40390 -29.40725 -27.05883
-24.29279 -24.01362 -22.38780 -21.02252 -20.45275 -17.94436 -17.06888 -16.41276
-15.42063 -14.79181 -14.57515 -14.39164 -13.64061 -13.57648 -13.12710 -12.72250
-12.43706 -12.02857 -11.81565 -11.40430 -11.34068 -10.93879 -10.76991 -10.55165
-10.39209 -10.17818 -9.91801 -9.64851 -9.51915 -9.37492 -9.09225 -8.34888
-8.04363 -7.38497 -6.01948 -4.06236 2.36498 3.00808 3.36163 3.39672
3.46935 3.97803 4.46781 4.98281 5.26788 5.42542 5.58544 5.68009
5.86486 5.92590 6.07423 6.14542 6.20823 6.27984 6.39119 6.50233
6.55272 6.58699 6.63640 6.82053 6.89264 6.98308 7.20260 7.35712
7.51610 7.69408 7.97222 8.16149 8.43936 8.53546 8.85122 9.04535
9.56754 11.01458
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.024862 B = 0.011783 C = 0.010800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1125.951931 B = 2375.662612 C = 2592.033879
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.080 4.080
3 H 0.121 0.879
4 C -0.107 4.107
5 C -0.035 4.035
6 C -0.245 4.245
7 C -0.008 4.008
8 N -0.401 5.401
9 O 0.086 5.914
10 C 0.041 3.959
11 C 0.157 3.843
12 C -0.478 4.478
13 H 0.053 0.947
14 C 0.081 3.919
15 N -0.889 5.889
16 Si 0.897 3.103
17 H -0.275 1.275
18 H -0.289 1.289
19 H -0.281 1.281
20 C 0.076 3.924
21 N -0.827 5.827
22 H 0.039 0.961
23 H 0.050 0.950
24 H 0.041 0.959
25 H 0.051 0.949
26 H 0.074 0.926
27 H 0.064 0.936
28 H 0.060 0.940
29 H 0.178 0.822
30 H 0.262 0.738
31 H -0.014 1.014
32 H 0.107 0.893
33 H 0.326 0.674
34 H 0.318 0.682
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.844 -3.050 3.629 6.778
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.099 4.099
3 H 0.138 0.862
4 C -0.145 4.145
5 C -0.073 4.073
6 C -0.250 4.250
7 C -0.185 4.185
8 N -0.111 5.111
9 O 0.029 5.971
10 C -0.024 4.024
11 C 0.155 3.845
12 C -0.516 4.516
13 H 0.072 0.928
14 C -0.121 4.121
15 N -0.528 5.528
16 Si 0.725 3.275
17 H -0.201 1.201
18 H -0.215 1.215
19 H -0.207 1.207
20 C -0.054 4.054
21 N -0.356 5.356
22 H 0.058 0.942
23 H 0.069 0.931
24 H 0.060 0.940
25 H 0.070 0.930
26 H 0.093 0.907
27 H 0.082 0.918
28 H 0.079 0.921
29 H 0.195 0.805
30 H 0.072 0.928
31 H 0.004 0.996
32 H 0.125 0.875
33 H 0.139 0.861
34 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -4.187 -3.504 2.934 6.198
hybrid contribution -0.070 -0.065 0.383 0.394
sum -4.257 -3.569 3.316 6.470
Atomic orbital electron populations
1.22072 0.98324 1.00179 1.00361 1.21329 0.92114 1.03418 0.93055
0.86171 1.21613 1.01264 0.93799 0.97827 1.19854 1.00243 0.95975
0.91181 1.20754 1.12851 0.93197 0.98149 1.24375 1.03712 0.97541
0.92881 1.74189 1.20270 1.04584 1.12028 1.84591 1.64516 1.12311
1.35703 1.25445 0.94741 0.95369 0.86834 1.17255 0.96912 0.77832
0.92516 1.20488 0.88587 0.93153 1.49369 0.92829 1.24657 0.97718
0.95536 0.94148 1.69702 1.34901 0.98419 1.49762 0.86580 0.85171
0.76720 0.79003 1.20086 1.21491 1.20680 1.21957 0.90904 1.02624
0.89959 1.58617 1.63223 1.10245 1.03474 0.94159 0.93108 0.93987
0.93047 0.90741 0.91760 0.92132 0.80504 0.92795 0.99621 0.87513
0.86089 0.87213
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.79 7.80 37.16 0.29 -2.50 16
2 C -0.08 -1.66 2.18 -90.39 -0.20 -1.86 16
3 H 0.12 2.81 5.96 -51.93 -0.31 2.50 16
4 C -0.11 -2.02 5.52 -26.39 -0.15 -2.17 16
5 C -0.03 -0.59 5.65 -27.90 -0.16 -0.75 16
6 C -0.24 -4.77 5.29 -105.20 -0.56 -5.33 16
7 C -0.01 -0.14 12.17 -17.35 -0.21 -0.35 16
8 N -0.40 -8.26 12.10 30.41 0.37 -7.89 16
9 O 0.09 1.88 9.08 19.24 0.17 2.06 16
10 C 0.04 0.89 5.29 -35.35 -0.19 0.71 16
11 C 0.16 3.54 0.13 -156.70 -0.02 3.52 16
12 C -0.48 -12.14 6.60 -34.44 -0.23 -12.37 16
13 H 0.05 1.44 7.75 -52.49 -0.41 1.04 16
14 C 0.08 2.05 5.12 -17.82 -0.09 1.96 16
15 N -0.89 -22.55 9.49 55.43 0.53 -22.03 16
16 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16
17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
18 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
20 C 0.08 1.69 4.57 -3.82 -0.02 1.67 16
21 N -0.83 -17.61 9.05 -10.37 -0.09 -17.70 16
22 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16
23 H 0.05 0.94 6.42 -51.93 -0.33 0.61 16
24 H 0.04 0.76 5.62 -51.93 -0.29 0.47 16
25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
26 H 0.07 1.55 7.35 -51.93 -0.38 1.17 16
27 H 0.06 1.00 7.02 -51.92 -0.36 0.63 16
28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
29 H 0.18 2.53 8.06 -52.49 -0.42 2.11 16
30 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16
31 H -0.01 -0.30 6.65 -51.93 -0.35 -0.64 16
32 H 0.11 2.59 6.29 -51.93 -0.33 2.26 16
33 H 0.33 6.84 6.53 -39.29 -0.26 6.58 16
34 H 0.32 5.87 9.08 -39.29 -0.36 5.51 16
LS Contribution 260.37 15.07 3.92 3.92
Total: -1.00 -26.43 260.37 -5.84 -32.28
By element:
Atomic # 1 Polarization: 15.23 SS G_CDS: -4.20 Total: 11.04 kcal
Atomic # 6 Polarization: -15.95 SS G_CDS: -1.52 Total: -17.47 kcal
Atomic # 7 Polarization: -48.42 SS G_CDS: 0.80 Total: -47.62 kcal
Atomic # 8 Polarization: 1.88 SS G_CDS: 0.17 Total: 2.06 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 3.92 Total: 3.92 kcal
Total: -26.43 -5.84 -32.28 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260171727.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.318 kcal
(2) G-P(sol) polarization free energy of solvation -26.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.276 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds