Wall clock time and date at job start Mon Mar 30 2020 03:38:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09003 * 109.42762 * 2 1
4 4 C 1.53108 * 109.43314 * 119.89869 * 2 1 3
5 5 C 1.53547 * 109.52382 * 50.16787 * 4 2 1
6 6 C 1.50084 * 108.23203 * 49.24162 * 5 4 2
7 7 C 1.40077 * 130.52326 * 163.81333 * 6 5 4
8 8 N 1.30691 * 105.96584 * 180.22593 * 7 6 5
9 9 O 1.21462 * 111.69134 * 359.97438 * 8 7 6
10 10 C 1.33166 * 111.27440 * 359.91852 * 9 8 7
11 11 C 1.50558 * 129.73604 * 180.41689 * 10 9 8
12 12 C 1.50702 * 109.69838 * 282.97396 * 11 10 9
13 13 H 1.07999 * 119.99873 * 357.56379 * 12 11 10
14 14 C 1.37876 * 120.00133 * 177.56125 * 12 11 10
15 15 N 1.31515 * 120.00240 * 6.52588 * 14 12 11
16 16 Si 1.86801 * 120.00073 * 186.52856 * 14 12 11
17 17 H 1.48501 * 109.47353 * 59.99757 * 16 14 12
18 18 H 1.48501 * 109.47125 * 179.97438 * 16 14 12
19 19 H 1.48502 * 109.47184 * 299.99997 * 16 14 12
20 20 C 1.52998 * 109.69811 * 43.56803 * 11 10 9
21 21 N 1.46904 * 109.47138 * 293.93495 * 20 11 10
22 22 H 1.09009 * 109.47174 * 300.09744 * 1 2 3
23 23 H 1.09001 * 109.47547 * 60.10098 * 1 2 3
24 24 H 1.08998 * 109.47570 * 180.10520 * 1 2 3
25 25 H 1.08999 * 109.46003 * 290.15725 * 4 2 1
26 26 H 1.08993 * 109.45433 * 170.17904 * 4 2 1
27 27 H 1.09008 * 109.71018 * 289.55890 * 5 4 2
28 28 H 1.09000 * 109.74587 * 168.94792 * 5 4 2
29 29 H 1.07998 * 127.01411 * 0.21183 * 7 6 5
30 30 H 0.96998 * 120.00103 * 180.02562 * 15 14 12
31 31 H 1.09000 * 109.47020 * 53.93305 * 20 11 10
32 32 H 1.08998 * 109.47596 * 173.93342 * 20 11 10
33 33 H 1.00897 * 110.99886 * 56.04652 * 21 20 11
34 34 H 1.00900 * 110.99385 * 179.97438 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8925 1.0280 0.0000
4 6 2.0394 -0.7197 1.2517
5 6 1.3359 -2.0781 1.3846
6 6 1.4230 -2.7833 0.0627
7 6 1.2193 -4.1297 -0.2658
8 7 1.4240 -4.2206 -1.5534
9 8 1.7151 -3.1458 -2.0386
10 6 1.7383 -2.1883 -1.1134
11 6 2.0369 -0.7195 -1.2557
12 6 3.5237 -0.5142 -1.3908
13 1 4.1929 -1.3601 -1.3359
14 6 4.0298 0.7537 -1.5845
15 7 3.2313 1.7969 -1.5235
16 14 5.8496 0.9897 -1.9338
17 1 6.2131 0.2644 -3.1776
18 1 6.1376 2.4367 -2.1030
19 1 6.6448 0.4556 -0.7991
20 6 1.3247 -0.1659 -2.4914
21 7 1.8983 -0.7726 -3.7001
22 1 -0.3634 0.5154 0.8892
23 1 -0.3634 0.5123 -0.8909
24 1 -0.3634 -1.0276 0.0019
25 1 1.8262 -0.1128 2.1316
26 1 3.1151 -0.8744 1.1690
27 1 0.2901 -1.9259 1.6519
28 1 1.8286 -2.6744 2.1526
29 1 0.9486 -4.9295 0.4076
30 1 3.5872 2.6888 -1.6601
31 1 0.2623 -0.4028 -2.4351
32 1 1.4541 0.9157 -2.5314
33 1 1.8486 -1.7795 -3.6577
34 1 1.4440 -0.4231 -4.5305
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260171727.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:03
Heat of formation + Delta-G solvation = 39.576243 kcal
Electronic energy + Delta-G solvation = -18156.218603 eV
Core-core repulsion = 15477.336457 eV
Total energy + Delta-G solvation = -2678.882146 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-45.66127 -39.82829 -36.16587 -33.99060 -33.82740 -31.94387 -30.99403 -28.72075
-25.85539 -25.81509 -23.92758 -22.57812 -22.07933 -19.55586 -18.73164 -18.03601
-17.15464 -16.56971 -16.27746 -15.92141 -15.38454 -15.06289 -14.61699 -14.33755
-14.06701 -13.63028 -13.40560 -12.98498 -12.83943 -12.78463 -12.61339 -12.34624
-11.94089 -11.76779 -11.70670 -11.23705 -11.11350 -11.00221 -10.75543 -10.24639
-9.63426 -9.09830 -7.95262 -6.03443 0.77780 1.46307 1.50036 1.52953
1.58306 2.38742 2.55357 3.32470 3.61101 3.94581 4.07908 4.11993
4.39787 4.44014 4.58113 4.63439 4.67098 4.83716 4.91388 4.96982
4.98766 5.09867 5.15846 5.33175 5.41049 5.43938 5.63727 5.66549
5.80926 5.90369 6.13250 6.37936 6.71773 6.84336 6.95465 7.47738
7.59481 9.04754
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.024862 B = 0.011783 C = 0.010800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1125.951931 B = 2375.662612 C = 2592.033879
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.081 4.081
3 H 0.092 0.908
4 C -0.106 4.106
5 C -0.030 4.030
6 C -0.242 4.242
7 C 0.007 3.993
8 N -0.417 5.417
9 O 0.063 5.937
10 C 0.012 3.988
11 C 0.153 3.847
12 C -0.485 4.485
13 H 0.028 0.972
14 C 0.051 3.949
15 N -0.896 5.896
16 Si 0.935 3.065
17 H -0.287 1.287
18 H -0.284 1.284
19 H -0.280 1.280
20 C 0.084 3.916
21 N -0.838 5.838
22 H 0.063 0.937
23 H 0.041 0.959
24 H 0.046 0.954
25 H 0.074 0.926
26 H 0.045 0.955
27 H 0.089 0.911
28 H 0.086 0.914
29 H 0.221 0.779
30 H 0.260 0.740
31 H -0.005 1.005
32 H 0.084 0.916
33 H 0.328 0.672
34 H 0.332 0.668
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.846 -3.923 5.154 8.725
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.100 4.100
3 H 0.110 0.890
4 C -0.143 4.143
5 C -0.068 4.068
6 C -0.246 4.246
7 C -0.171 4.171
8 N -0.131 5.131
9 O 0.009 5.991
10 C -0.053 4.053
11 C 0.152 3.848
12 C -0.524 4.524
13 H 0.046 0.954
14 C -0.150 4.150
15 N -0.535 5.535
16 Si 0.763 3.237
17 H -0.213 1.213
18 H -0.209 1.209
19 H -0.205 1.205
20 C -0.047 4.047
21 N -0.368 5.368
22 H 0.082 0.918
23 H 0.060 0.940
24 H 0.065 0.935
25 H 0.093 0.907
26 H 0.064 0.936
27 H 0.107 0.893
28 H 0.105 0.895
29 H 0.237 0.763
30 H 0.070 0.930
31 H 0.013 0.987
32 H 0.102 0.898
33 H 0.142 0.858
34 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges -5.187 -4.348 4.446 8.098
hybrid contribution 0.250 0.159 -0.092 0.310
sum -4.937 -4.189 4.353 7.802
Atomic orbital electron populations
1.21954 0.96229 1.00638 1.01119 1.21209 0.93863 1.01722 0.93230
0.89047 1.21558 0.99651 0.95392 0.97725 1.19945 1.01710 0.94641
0.90463 1.21185 1.11324 0.93714 0.98396 1.25033 1.01502 0.98102
0.92447 1.74181 1.21192 1.04262 1.13426 1.84564 1.65547 1.12695
1.36331 1.25390 0.96706 0.95167 0.88010 1.17182 0.95144 0.79136
0.93386 1.20529 0.90199 0.92246 1.49377 0.95412 1.25060 0.99790
0.95613 0.94491 1.69797 1.35359 0.98276 1.50027 0.85990 0.82889
0.76594 0.78189 1.21278 1.20920 1.20535 1.21781 0.91420 1.01116
0.90343 1.58566 1.63754 1.10484 1.04034 0.91807 0.94007 0.93502
0.90709 0.93585 0.89305 0.89549 0.76254 0.93015 0.98734 0.89817
0.85848 0.85678
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.92 7.80 71.98 0.56 -4.35 16
2 C -0.08 -3.29 2.18 -10.64 -0.02 -3.31 16
3 H 0.09 4.28 5.96 -2.39 -0.01 4.27 16
4 C -0.11 -3.78 5.52 30.81 0.17 -3.61 16
5 C -0.03 -0.91 5.65 29.84 0.17 -0.75 16
6 C -0.24 -8.79 5.29 -20.24 -0.11 -8.90 16
7 C 0.01 0.22 12.17 85.31 1.04 1.26 16
8 N -0.42 -16.52 12.10 -58.31 -0.71 -17.22 16
9 O 0.06 2.71 9.08 78.86 0.72 3.43 16
10 C 0.01 0.51 5.29 25.01 0.13 0.64 16
11 C 0.15 6.93 0.13 -53.60 -0.01 6.92 16
12 C -0.49 -25.09 6.60 25.60 0.17 -24.92 16
13 H 0.03 1.54 7.75 -2.91 -0.02 1.51 16
14 C 0.05 2.60 5.12 84.65 0.43 3.04 16
15 N -0.90 -46.02 9.49 21.45 0.20 -45.82 16
16 Si 0.94 43.14 29.54 68.60 2.03 45.16 16
17 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16
18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
20 C 0.08 3.76 4.57 86.30 0.39 4.15 16
21 N -0.84 -36.07 9.05 -186.71 -1.69 -37.76 16
22 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16
23 H 0.04 1.49 6.42 -2.39 -0.02 1.48 16
24 H 0.05 1.56 5.62 -2.39 -0.01 1.55 16
25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
26 H 0.05 1.89 7.35 -2.39 -0.02 1.87 16
27 H 0.09 2.31 7.02 -2.38 -0.02 2.29 16
28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16
29 H 0.22 5.18 8.06 -2.91 -0.02 5.15 16
30 H 0.26 13.06 8.31 -92.71 -0.77 12.29 16
31 H -0.01 -0.22 6.65 -2.39 -0.02 -0.24 16
32 H 0.08 4.12 6.29 -2.39 -0.02 4.11 16
33 H 0.33 13.95 6.53 -89.70 -0.59 13.36 16
34 H 0.33 12.31 9.08 -89.69 -0.81 11.50 16
Total: -1.00 -56.80 260.37 3.22 -53.58
By element:
Atomic # 1 Polarization: 28.72 SS G_CDS: -0.26 Total: 28.46 kcal
Atomic # 6 Polarization: -32.76 SS G_CDS: 2.93 Total: -29.84 kcal
Atomic # 7 Polarization: -98.61 SS G_CDS: -2.19 Total: -100.80 kcal
Atomic # 8 Polarization: 2.71 SS G_CDS: 0.72 Total: 3.43 kcal
Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal
Total: -56.80 3.22 -53.58 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260171727.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.155 kcal
(2) G-P(sol) polarization free energy of solvation -56.798 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.357 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.579 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds