Wall clock time and date at job start Mon Mar 30 2020 03:03:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30253 * 125.62276 * 2 1
4 4 C 1.34471 * 108.70602 * 180.26292 * 3 2 1
5 5 C 1.34332 * 107.66856 * 0.02562 * 4 3 2
6 6 C 1.50699 * 126.44280 * 180.02562 * 5 4 3
7 7 N 1.46897 * 109.46923 * 90.00282 * 6 5 4
8 8 C 1.47902 * 111.00452 * 69.87389 * 7 6 5
9 9 C 1.53996 * 107.05824 * 214.15581 * 8 7 6
10 10 C 1.54600 * 105.13825 * 1.22243 * 9 8 7
11 11 H 1.09002 * 110.72163 * 263.59748 * 10 9 8
12 12 C 1.50704 * 110.72339 * 140.31625 * 10 9 8
13 13 H 1.07989 * 120.00138 * 241.45463 * 12 10 9
14 14 C 1.37877 * 119.99680 * 61.45004 * 12 10 9
15 15 N 1.31509 * 120.00584 * 0.02562 * 14 12 10
16 16 Si 1.86799 * 119.99658 * 179.97438 * 14 12 10
17 17 H 1.48504 * 109.46970 * 90.00250 * 16 14 12
18 18 H 1.48503 * 109.47576 * 209.99979 * 16 14 12
19 19 H 1.48498 * 109.47512 * 330.00302 * 16 14 12
20 20 C 1.48530 * 111.00006 * 312.47301 * 7 6 5
21 21 O 1.33974 * 125.62013 * 180.30958 * 2 1 3
22 22 H 1.08997 * 109.47201 * 269.69318 * 1 2 3
23 23 H 1.09002 * 109.47145 * 29.69406 * 1 2 3
24 24 H 1.09003 * 109.47052 * 149.69094 * 1 2 3
25 25 H 1.08005 * 126.16912 * 180.02562 * 4 3 2
26 26 H 1.08999 * 109.46894 * 209.99509 * 6 5 4
27 27 H 1.08991 * 109.47321 * 329.99779 * 6 5 4
28 28 H 1.09005 * 109.91307 * 333.50537 * 8 7 6
29 29 H 1.08997 * 109.91817 * 94.80163 * 8 7 6
30 30 H 1.08996 * 110.30814 * 120.13704 * 9 8 7
31 31 H 1.09004 * 110.30897 * 242.20566 * 9 8 7
32 32 H 0.97003 * 120.00285 * 180.02562 * 15 14 12
33 33 H 1.09003 * 110.66908 * 278.15754 * 20 7 6
34 34 H 1.08999 * 110.66998 * 41.28992 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5521 0.6675 -0.0058
5 6 3.5698 -0.6757 -0.0101
6 6 4.7937 -1.5549 -0.0167
7 7 5.1957 -1.8449 1.3662
8 6 4.2211 -2.7416 2.0246
9 6 4.1612 -2.3325 3.5080
10 6 5.1327 -1.1367 3.6365
11 1 6.1099 -1.4697 3.9863
12 6 4.5656 -0.0853 4.5552
13 1 4.3631 0.9070 4.1803
14 6 4.3053 -0.3903 5.8744
15 7 4.5522 -1.5985 6.3311
16 14 3.6030 0.9132 7.0133
17 1 2.1195 0.8632 6.9676
18 1 4.0643 0.6583 8.4016
19 1 4.0667 2.2545 6.5761
20 6 5.2220 -0.6052 2.1839
21 8 2.2872 -1.0891 -0.0059
22 1 -0.3633 -0.0055 1.0276
23 1 -0.3633 0.8927 -0.5091
24 1 -0.3633 -0.8872 -0.5186
25 1 4.4157 1.3162 -0.0069
26 1 4.5679 -2.4881 -0.5326
27 1 5.6063 -1.0425 -0.5315
28 1 3.2390 -2.6229 1.5667
29 1 4.5514 -3.7767 1.9379
30 1 3.1494 -2.0284 3.7760
31 1 4.4880 -3.1572 4.1414
32 1 4.3687 -1.8132 7.2591
33 1 6.1546 -0.0623 2.0296
34 1 4.3648 0.0269 1.9522
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260229565.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:27
Heat of formation + Delta-G solvation = 24.469887 kcal
Electronic energy + Delta-G solvation = -17147.444751 eV
Core-core repulsion = 14467.907544 eV
Total energy + Delta-G solvation = -2679.537207 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-43.11899 -38.18211 -34.50837 -33.64793 -32.11976 -30.65643 -28.40679 -27.45663
-25.29046 -23.61806 -22.09731 -20.96263 -19.90143 -19.48210 -16.88426 -16.67519
-16.16135 -15.24045 -14.68939 -14.48657 -14.07455 -13.89007 -13.27272 -13.02959
-12.88752 -12.57684 -12.28036 -12.12301 -11.48812 -11.08315 -10.98730 -10.95975
-10.73591 -10.55020 -10.30273 -10.26954 -9.66527 -9.24574 -8.82027 -8.43401
-8.33689 -8.00589 -6.02476 -4.05621 1.67890 2.88289 2.93056 3.30057
3.36716 3.40830 4.24308 4.41653 4.64349 4.98233 5.14429 5.24437
5.31276 5.37315 5.51844 5.60830 5.73133 5.79720 5.99582 6.04178
6.21074 6.26653 6.39630 6.52639 6.56770 6.80754 7.06356 7.14184
7.46725 7.54834 7.64916 7.84864 7.96352 8.01409 8.43067 8.96526
9.58653 11.07306
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023544 B = 0.008434 C = 0.007138
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1188.988271 B = 3318.931658 C = 3921.992505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 C 0.177 3.823
3 N -0.483 5.483
4 C -0.031 4.031
5 C -0.067 4.067
6 C 0.127 3.873
7 N -0.506 5.506
8 C 0.027 3.973
9 C -0.100 4.100
10 C 0.054 3.946
11 H 0.036 0.964
12 C -0.515 4.515
13 H 0.055 0.945
14 C 0.064 3.936
15 N -0.888 5.888
16 Si 0.889 3.111
17 H -0.282 1.282
18 H -0.286 1.286
19 H -0.274 1.274
20 C 0.027 3.973
21 O -0.199 6.199
22 H 0.091 0.909
23 H 0.097 0.903
24 H 0.084 0.916
25 H 0.180 0.820
26 H 0.084 0.916
27 H 0.105 0.895
28 H 0.034 0.966
29 H 0.065 0.935
30 H 0.052 0.948
31 H 0.061 0.939
32 H 0.260 0.740
33 H 0.065 0.935
34 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.516 -0.203 -12.582 13.369
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.030 4.030
3 N -0.213 5.213
4 C -0.171 4.171
5 C -0.122 4.122
6 C -0.002 4.002
7 N -0.228 5.228
8 C -0.101 4.101
9 C -0.139 4.139
10 C 0.035 3.965
11 H 0.054 0.946
12 C -0.553 4.553
13 H 0.073 0.927
14 C -0.138 4.138
15 N -0.526 5.526
16 Si 0.717 3.283
17 H -0.208 1.208
18 H -0.212 1.212
19 H -0.198 1.198
20 C -0.100 4.100
21 O -0.086 6.086
22 H 0.110 0.890
23 H 0.116 0.884
24 H 0.103 0.897
25 H 0.197 0.803
26 H 0.103 0.897
27 H 0.123 0.877
28 H 0.053 0.947
29 H 0.083 0.917
30 H 0.070 0.930
31 H 0.080 0.920
32 H 0.070 0.930
33 H 0.084 0.916
34 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -4.245 -0.018 -12.435 13.140
hybrid contribution -0.924 0.410 0.787 1.281
sum -5.168 0.391 -11.648 12.749
Atomic orbital electron populations
1.20192 0.81795 1.04516 1.04650 1.26214 0.96418 0.79081 1.01270
1.70373 1.02178 1.30357 1.18433 1.23020 0.94937 0.93075 1.06039
1.24690 0.84192 0.96642 1.06683 1.21167 0.87752 0.97034 0.94286
1.65166 1.43859 1.13670 1.00103 1.23090 0.92882 0.96509 0.97584
1.22298 1.00952 1.00122 0.90494 1.19523 0.95617 0.92677 0.88685
0.94565 1.21066 1.42699 0.97111 0.94451 0.92704 1.24951 0.95498
0.95330 0.98017 1.69973 1.48052 1.19118 1.15446 0.86638 0.79277
0.82229 0.80155 1.20777 1.21165 1.19841 1.23672 0.99959 0.90471
0.95904 1.84422 1.16815 1.37683 1.69658 0.89013 0.88448 0.89717
0.80269 0.89733 0.87700 0.94736 0.91666 0.92955 0.91987 0.93036
0.91623 0.93244
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.57 10.51 36.00 0.38 -0.19 16
2 C 0.18 2.83 8.34 -12.95 -0.11 2.72 16
3 N -0.48 -8.59 11.29 -11.10 -0.13 -8.71 16
4 C -0.03 -0.53 9.87 -17.77 -0.18 -0.70 16
5 C -0.07 -1.12 4.93 -35.69 -0.18 -1.30 16
6 C 0.13 1.92 6.04 -4.98 -0.03 1.89 16
7 N -0.51 -9.50 5.54 -231.90 -1.28 -10.79 16
8 C 0.03 0.54 6.46 -2.75 -0.02 0.52 16
9 C -0.10 -2.40 5.51 -25.37 -0.14 -2.54 16
10 C 0.05 1.38 2.99 -89.91 -0.27 1.11 16
11 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16
12 C -0.51 -14.39 8.42 -34.44 -0.29 -14.68 16
13 H 0.05 1.54 7.78 -52.49 -0.41 1.13 16
14 C 0.06 1.80 5.33 -17.82 -0.10 1.70 16
15 N -0.89 -25.71 12.44 55.43 0.69 -25.02 16
16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16
17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
20 C 0.03 0.57 5.61 -1.90 -0.01 0.55 16
21 O -0.20 -3.42 9.84 5.35 0.05 -3.37 16
22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
23 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16
24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16
25 H 0.18 2.67 8.06 -52.48 -0.42 2.24 16
26 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16
27 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16
28 H 0.03 0.68 6.30 -51.93 -0.33 0.35 16
29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
30 H 0.05 1.36 7.84 -51.93 -0.41 0.95 16
31 H 0.06 1.56 8.05 -51.93 -0.42 1.14 16
32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16
34 H 0.05 1.10 4.84 -51.93 -0.25 0.84 16
LS Contribution 280.23 15.07 4.22 4.22
Total: -1.00 -31.29 280.23 -7.15 -38.44
By element:
Atomic # 1 Polarization: 4.25 SS G_CDS: -4.75 Total: -0.50 kcal
Atomic # 6 Polarization: -9.98 SS G_CDS: -0.93 Total: -10.92 kcal
Atomic # 7 Polarization: -43.80 SS G_CDS: -0.72 Total: -44.52 kcal
Atomic # 8 Polarization: -3.42 SS G_CDS: 0.05 Total: -3.37 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -31.29 -7.15 -38.44 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260229565.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.906 kcal
(2) G-P(sol) polarization free energy of solvation -31.290 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.616 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.470 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds