Wall clock time and date at job start Mon Mar 30 2020 03:03:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30253 * 125.62276 * 2 1
4 4 C 1.34471 * 108.70602 * 180.26292 * 3 2 1
5 5 C 1.34332 * 107.66856 * 0.02562 * 4 3 2
6 6 C 1.50699 * 126.44280 * 180.02562 * 5 4 3
7 7 N 1.46897 * 109.46923 * 90.00282 * 6 5 4
8 8 C 1.47902 * 111.00452 * 69.87389 * 7 6 5
9 9 C 1.53996 * 107.05824 * 214.15581 * 8 7 6
10 10 C 1.54600 * 105.13825 * 1.22243 * 9 8 7
11 11 H 1.09002 * 110.72163 * 263.59748 * 10 9 8
12 12 C 1.50704 * 110.72339 * 140.31625 * 10 9 8
13 13 H 1.07989 * 120.00138 * 241.45463 * 12 10 9
14 14 C 1.37877 * 119.99680 * 61.45004 * 12 10 9
15 15 N 1.31509 * 120.00584 * 0.02562 * 14 12 10
16 16 Si 1.86799 * 119.99658 * 179.97438 * 14 12 10
17 17 H 1.48504 * 109.46970 * 90.00250 * 16 14 12
18 18 H 1.48503 * 109.47576 * 209.99979 * 16 14 12
19 19 H 1.48498 * 109.47512 * 330.00302 * 16 14 12
20 20 C 1.48530 * 111.00006 * 312.47301 * 7 6 5
21 21 O 1.33974 * 125.62013 * 180.30958 * 2 1 3
22 22 H 1.08997 * 109.47201 * 269.69318 * 1 2 3
23 23 H 1.09002 * 109.47145 * 29.69406 * 1 2 3
24 24 H 1.09003 * 109.47052 * 149.69094 * 1 2 3
25 25 H 1.08005 * 126.16912 * 180.02562 * 4 3 2
26 26 H 1.08999 * 109.46894 * 209.99509 * 6 5 4
27 27 H 1.08991 * 109.47321 * 329.99779 * 6 5 4
28 28 H 1.09005 * 109.91307 * 333.50537 * 8 7 6
29 29 H 1.08997 * 109.91817 * 94.80163 * 8 7 6
30 30 H 1.08996 * 110.30814 * 120.13704 * 9 8 7
31 31 H 1.09004 * 110.30897 * 242.20566 * 9 8 7
32 32 H 0.97003 * 120.00285 * 180.02562 * 15 14 12
33 33 H 1.09003 * 110.66908 * 278.15754 * 20 7 6
34 34 H 1.08999 * 110.66998 * 41.28992 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0588 0.0000
4 6 3.5521 0.6675 -0.0058
5 6 3.5698 -0.6757 -0.0101
6 6 4.7937 -1.5549 -0.0167
7 7 5.1957 -1.8449 1.3662
8 6 4.2211 -2.7416 2.0246
9 6 4.1612 -2.3325 3.5080
10 6 5.1327 -1.1367 3.6365
11 1 6.1099 -1.4697 3.9863
12 6 4.5656 -0.0853 4.5552
13 1 4.3631 0.9070 4.1803
14 6 4.3053 -0.3903 5.8744
15 7 4.5522 -1.5985 6.3311
16 14 3.6030 0.9132 7.0133
17 1 2.1195 0.8632 6.9676
18 1 4.0643 0.6583 8.4016
19 1 4.0667 2.2545 6.5761
20 6 5.2220 -0.6052 2.1839
21 8 2.2872 -1.0891 -0.0059
22 1 -0.3633 -0.0055 1.0276
23 1 -0.3633 0.8927 -0.5091
24 1 -0.3633 -0.8872 -0.5186
25 1 4.4157 1.3162 -0.0069
26 1 4.5679 -2.4881 -0.5326
27 1 5.6063 -1.0425 -0.5315
28 1 3.2390 -2.6229 1.5667
29 1 4.5514 -3.7767 1.9379
30 1 3.1494 -2.0284 3.7760
31 1 4.4880 -3.1572 4.1414
32 1 4.3687 -1.8132 7.2591
33 1 6.1546 -0.0623 2.0296
34 1 4.3648 0.0269 1.9522
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260229565.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:27
Heat of formation + Delta-G solvation = 0.965817 kcal
Electronic energy + Delta-G solvation = -17148.463964 eV
Core-core repulsion = 14467.907544 eV
Total energy + Delta-G solvation = -2680.556420 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-44.36303 -39.81797 -35.77563 -35.48135 -33.65422 -32.09196 -30.14289 -28.86642
-26.99267 -25.27954 -23.38028 -22.29732 -21.47530 -21.33898 -18.60652 -17.94253
-17.79747 -16.80508 -16.57731 -16.05351 -15.54541 -15.12331 -14.76909 -14.32723
-14.12329 -13.92746 -13.70184 -13.42911 -13.22955 -13.04607 -12.68963 -12.47429
-12.34860 -12.26232 -12.14972 -11.63366 -11.54774 -11.16680 -10.87987 -10.55044
-9.68376 -9.50413 -8.18067 -6.28222 0.44358 1.36183 1.37105 1.47701
1.67695 1.73237 2.38227 3.09046 3.13980 3.23053 3.79253 3.98616
4.06338 4.10473 4.31897 4.42212 4.56571 4.59833 4.62965 4.67201
4.73740 4.81996 4.97384 5.02044 5.02668 5.19661 5.24715 5.39526
5.55808 5.70089 5.78743 5.93665 6.07107 6.33321 6.72634 6.80804
7.39439 8.91285
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023544 B = 0.008434 C = 0.007138
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1188.988271 B = 3318.931658 C = 3921.992505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 C 0.175 3.825
3 N -0.516 5.516
4 C -0.043 4.043
5 C -0.079 4.079
6 C 0.129 3.871
7 N -0.504 5.504
8 C 0.039 3.961
9 C -0.091 4.091
10 C 0.043 3.957
11 H 0.006 0.994
12 C -0.533 4.533
13 H 0.048 0.952
14 C 0.016 3.984
15 N -0.915 5.915
16 Si 0.951 3.049
17 H -0.277 1.277
18 H -0.279 1.279
19 H -0.268 1.268
20 C 0.042 3.958
21 O -0.211 6.211
22 H 0.096 0.904
23 H 0.115 0.885
24 H 0.110 0.890
25 H 0.193 0.807
26 H 0.107 0.893
27 H 0.135 0.865
28 H 0.039 0.961
29 H 0.086 0.914
30 H 0.023 0.977
31 H 0.041 0.959
32 H 0.262 0.738
33 H 0.077 0.923
34 H 0.042 0.958
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.138 0.036 -13.792 14.718
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.031 4.031
3 N -0.246 5.246
4 C -0.182 4.182
5 C -0.134 4.134
6 C 0.000 4.000
7 N -0.226 5.226
8 C -0.089 4.089
9 C -0.129 4.129
10 C 0.023 3.977
11 H 0.024 0.976
12 C -0.572 4.572
13 H 0.066 0.934
14 C -0.184 4.184
15 N -0.554 5.554
16 Si 0.776 3.224
17 H -0.203 1.203
18 H -0.204 1.204
19 H -0.193 1.193
20 C -0.085 4.085
21 O -0.099 6.099
22 H 0.115 0.885
23 H 0.133 0.867
24 H 0.128 0.872
25 H 0.210 0.790
26 H 0.125 0.875
27 H 0.153 0.847
28 H 0.057 0.943
29 H 0.104 0.896
30 H 0.042 0.958
31 H 0.060 0.940
32 H 0.071 0.929
33 H 0.095 0.905
34 H 0.060 0.940
Dipole moment (debyes) X Y Z Total
from point charges -4.861 0.225 -13.663 14.503
hybrid contribution -0.756 0.340 1.144 1.413
sum -5.617 0.566 -12.519 13.733
Atomic orbital electron populations
1.20497 0.78455 1.06681 1.05557 1.27297 0.98158 0.78433 0.99257
1.70389 1.02825 1.31404 1.20019 1.23354 0.95328 0.93691 1.05861
1.24877 0.84537 0.96749 1.07193 1.21385 0.88135 0.98472 0.92013
1.65131 1.43795 1.12122 1.01553 1.22949 0.93703 0.97792 0.94458
1.22056 0.98646 0.98842 0.93397 1.19490 0.94100 0.92976 0.91090
0.97568 1.21366 1.42938 0.97432 0.95436 0.93381 1.25714 0.95820
0.97305 0.99516 1.70084 1.48808 1.20707 1.15809 0.85667 0.78590
0.79805 0.78315 1.20307 1.20433 1.19299 1.23385 1.00207 0.91298
0.93585 1.84423 1.17202 1.38304 1.69937 0.88509 0.86702 0.87158
0.79003 0.87473 0.84745 0.94292 0.89567 0.95779 0.94045 0.92926
0.90480 0.94012
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -1.04 10.51 71.23 0.75 -0.29 16
2 C 0.18 5.34 8.34 88.34 0.74 6.08 16
3 N -0.52 -17.81 11.29 -303.82 -3.43 -21.24 16
4 C -0.04 -1.42 9.87 83.40 0.82 -0.60 16
5 C -0.08 -2.50 4.93 24.79 0.12 -2.38 16
6 C 0.13 3.51 6.04 85.56 0.52 4.03 16
7 N -0.50 -17.99 5.54 -887.59 -4.91 -22.91 16
8 C 0.04 1.49 6.46 86.45 0.56 2.05 16
9 C -0.09 -4.43 5.51 31.48 0.17 -4.26 16
10 C 0.04 2.21 2.99 -10.33 -0.03 2.18 16
11 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16
12 C -0.53 -30.33 8.42 25.60 0.22 -30.12 16
13 H 0.05 2.73 7.78 -2.92 -0.02 2.71 16
14 C 0.02 0.90 5.33 84.66 0.45 1.35 16
15 N -0.92 -54.04 12.44 21.45 0.27 -53.77 16
16 Si 0.95 44.69 29.54 68.60 2.03 46.72 16
17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16
19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
20 C 0.04 1.78 5.61 86.65 0.49 2.26 16
21 O -0.21 -6.91 9.84 -3.76 -0.04 -6.94 16
22 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16
23 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16
24 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16
25 H 0.19 5.47 8.06 -2.91 -0.02 5.45 16
26 H 0.11 2.49 8.08 -2.39 -0.02 2.47 16
27 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16
28 H 0.04 1.47 6.30 -2.38 -0.02 1.45 16
29 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16
30 H 0.02 1.26 7.84 -2.39 -0.02 1.25 16
31 H 0.04 2.14 8.05 -2.39 -0.02 2.12 16
32 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16
33 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16
34 H 0.04 1.83 4.84 -2.39 -0.01 1.82 16
Total: -1.00 -68.01 280.23 -0.20 -68.22
By element:
Atomic # 1 Polarization: 8.54 SS G_CDS: 1.08 Total: 9.63 kcal
Atomic # 6 Polarization: -24.50 SS G_CDS: 4.80 Total: -19.70 kcal
Atomic # 7 Polarization: -89.84 SS G_CDS: -8.08 Total: -97.92 kcal
Atomic # 8 Polarization: -6.91 SS G_CDS: -0.04 Total: -6.94 kcal
Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal
Total: -68.01 -0.20 -68.22 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260229565.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.183 kcal
(2) G-P(sol) polarization free energy of solvation -68.014 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.218 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.966 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds