Wall clock time and date at job start Mon Mar 30 2020 03:04:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50698 * 109.47095 * 2 1
4 4 N 1.32047 * 118.76793 * 269.99809 * 3 2 1
5 5 C 1.32023 * 121.24888 * 180.02562 * 4 3 2
6 6 C 1.50698 * 120.57884 * 180.27344 * 5 4 3
7 7 C 1.52994 * 109.47278 * 269.71999 * 6 5 4
8 8 C 1.40912 * 118.83562 * 359.97438 * 5 4 3
9 9 C 1.41172 * 121.08487 * 180.02562 * 8 5 4
10 10 H 1.08004 * 119.99959 * 322.63129 * 9 8 5
11 11 C 1.39960 * 120.00028 * 142.63008 * 9 8 5
12 12 N 1.30854 * 120.00236 * 339.42990 * 11 9 8
13 13 Si 1.86799 * 120.00025 * 159.43525 * 11 9 8
14 14 H 1.48496 * 109.47267 * 89.99538 * 13 11 9
15 15 H 1.48500 * 109.47395 * 209.99679 * 13 11 9
16 16 H 1.48505 * 109.46867 * 329.99829 * 13 11 9
17 17 C 1.41878 * 117.83350 * 0.02562 * 8 5 4
18 18 O 1.35268 * 120.68291 * 180.02562 * 17 8 5
19 19 C 1.42893 * 116.99990 * 179.97438 * 18 17 8
20 20 N 1.31872 * 118.77415 * 90.00067 * 3 2 1
21 21 H 1.08994 * 109.47666 * 180.02562 * 1 2 3
22 22 H 1.08995 * 109.47440 * 300.00634 * 1 2 3
23 23 H 1.09010 * 109.46721 * 60.00141 * 1 2 3
24 24 H 1.09001 * 109.47349 * 240.00067 * 2 1 3
25 25 H 1.08997 * 109.46990 * 119.99820 * 2 1 3
26 26 H 1.08996 * 109.47477 * 29.71892 * 6 5 4
27 27 H 1.09001 * 109.46745 * 149.71652 * 6 5 4
28 28 H 1.09003 * 109.47601 * 180.02562 * 7 6 5
29 29 H 1.09011 * 109.47259 * 300.00190 * 7 6 5
30 30 H 1.09001 * 109.47516 * 60.00125 * 7 6 5
31 31 H 0.96994 * 120.00172 * 180.02562 * 12 11 9
32 32 H 1.08999 * 109.47186 * 179.97438 * 19 18 17
33 33 H 1.08999 * 109.47362 * 299.99686 * 19 18 17
34 34 H 1.08998 * 109.47284 * 59.99855 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2442 2.0199 -1.1575
5 6 2.6843 3.2633 -1.2146
6 6 2.9151 3.9345 -2.5440
7 6 4.3549 3.6860 -2.9977
8 6 2.9284 3.9539 -0.0108
9 6 3.3989 5.2848 -0.0165
10 1 4.1132 5.6019 -0.7621
11 6 2.9398 6.1935 0.9439
12 7 1.8173 5.9656 1.5765
13 14 3.9295 7.7319 1.3226
14 1 3.4911 8.8347 0.4301
15 1 3.7120 8.1245 2.7381
16 1 5.3724 7.4593 1.1005
17 6 2.6858 3.2679 1.2072
18 8 2.9002 3.8760 2.3964
19 6 2.6297 3.1125 3.5735
20 7 2.2439 2.0193 1.1559
21 1 -0.3634 -1.0276 0.0005
22 1 -0.3634 0.5139 0.8899
23 1 -0.3633 0.5139 -0.8901
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 2.2257 3.5251 -3.2823
27 1 2.7455 5.0066 -2.4439
28 1 4.5220 4.1718 -3.9591
29 1 5.0444 4.0954 -2.2593
30 1 4.5244 2.6139 -3.0978
31 1 1.4990 6.5955 2.2418
32 1 2.8433 3.7165 4.4554
33 1 1.5809 2.8159 3.5812
34 1 3.2590 2.2226 3.5820
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260345779.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:53
Heat of formation + Delta-G solvation = -18.697507 kcal
Electronic energy + Delta-G solvation = -17228.983039 eV
Core-core repulsion = 14547.573953 eV
Total energy + Delta-G solvation = -2681.409086 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.49758 -37.01599 -34.70401 -33.25296 -32.18059 -30.54830 -29.45610 -26.46010
-25.64173 -23.44379 -22.92225 -21.04840 -19.81845 -17.56536 -16.95394 -15.92981
-15.15539 -14.68369 -14.00679 -13.75285 -13.49593 -13.34273 -13.17609 -12.71221
-12.46754 -11.96549 -11.86826 -11.37984 -11.24110 -11.12717 -11.01311 -10.79873
-10.61946 -10.49757 -10.38959 -10.20248 -10.16421 -9.35964 -9.03783 -8.52004
-7.82525 -7.31554 -6.82840 -4.40390 2.54954 2.84486 3.07394 3.08478
3.14996 3.93300 4.42527 4.66463 5.27883 5.39999 5.48336 5.84424
5.94215 5.98984 6.05506 6.06115 6.12126 6.15638 6.27487 6.33753
6.38904 6.52360 6.60513 6.67686 6.77971 6.81736 6.94100 7.04070
7.13729 7.24308 7.72877 8.16088 8.25589 8.57986 8.72264 9.02338
9.80484 10.15197
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022286 B = 0.010852 C = 0.007986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1256.072523 B = 2579.655880 C = 3505.477039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.028 4.028
3 C 0.204 3.796
4 N -0.510 5.510
5 C 0.054 3.946
6 C -0.042 4.042
7 C -0.138 4.138
8 C 0.025 3.975
9 C -0.444 4.444
10 H 0.087 0.913
11 C 0.085 3.915
12 N -0.762 5.762
13 Si 0.907 3.093
14 H -0.271 1.271
15 H -0.276 1.276
16 H -0.260 1.260
17 C 0.291 3.709
18 O -0.270 6.270
19 C 0.045 3.955
20 N -0.563 5.563
21 H 0.048 0.952
22 H 0.050 0.950
23 H 0.052 0.948
24 H 0.068 0.932
25 H 0.066 0.934
26 H 0.058 0.942
27 H 0.077 0.923
28 H 0.046 0.954
29 H 0.054 0.946
30 H 0.047 0.953
31 H 0.282 0.718
32 H 0.074 0.926
33 H 0.044 0.956
34 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.993 -2.404 -0.384 2.629
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.067 4.067
3 C -0.060 4.060
4 N -0.227 5.227
5 C -0.091 4.091
6 C -0.080 4.080
7 C -0.197 4.197
8 C 0.017 3.983
9 C -0.474 4.474
10 H 0.105 0.895
11 C -0.137 4.137
12 N -0.385 5.385
13 Si 0.731 3.269
14 H -0.196 1.196
15 H -0.201 1.201
16 H -0.184 1.184
17 C 0.099 3.901
18 O -0.174 6.174
19 C -0.052 4.052
20 N -0.293 5.293
21 H 0.067 0.933
22 H 0.070 0.930
23 H 0.071 0.929
24 H 0.087 0.913
25 H 0.084 0.916
26 H 0.077 0.923
27 H 0.095 0.905
28 H 0.065 0.935
29 H 0.073 0.927
30 H 0.066 0.934
31 H 0.093 0.907
32 H 0.093 0.907
33 H 0.062 0.938
34 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 0.582 -2.975 -0.131 3.035
hybrid contribution 0.489 1.412 0.677 1.640
sum 1.071 -1.564 0.546 1.972
Atomic orbital electron populations
1.21665 0.95734 1.00306 1.01907 1.19821 0.95111 0.90388 1.01417
1.21464 1.04876 0.96808 0.82860 1.67254 1.14470 1.11087 1.29846
1.21136 1.03219 0.90727 0.94024 1.19958 0.96035 0.99961 0.92096
1.21669 0.97260 1.00884 0.99840 1.18148 0.95880 0.95404 0.88845
1.19168 1.22336 0.93227 1.12633 0.89487 1.25765 0.93978 0.99892
0.94041 1.69717 1.16133 1.34788 1.17894 0.86336 0.81436 0.80806
0.78339 1.19622 1.20131 1.18424 1.20416 0.96686 0.86805 0.86165
1.86331 1.81258 1.38797 1.11001 1.22510 1.00341 0.95671 0.86637
1.67204 1.19049 1.11047 1.32009 0.93285 0.93045 0.92859 0.91314
0.91579 0.92306 0.90452 0.93522 0.92710 0.93396 0.90685 0.90735
0.93770 0.94162
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.34 9.89 37.16 0.37 -1.97 16
2 C -0.03 -0.53 6.35 -27.89 -0.18 -0.71 16
3 C 0.20 4.88 6.90 -156.91 -1.08 3.80 16
4 N -0.51 -12.56 10.23 -6.43 -0.07 -12.63 16
5 C 0.05 1.33 6.15 -81.50 -0.50 0.83 16
6 C -0.04 -0.88 5.77 -27.89 -0.16 -1.04 16
7 C -0.14 -2.49 9.89 37.15 0.37 -2.12 16
8 C 0.02 0.65 5.40 -106.38 -0.57 0.08 16
9 C -0.44 -11.35 7.77 -37.82 -0.29 -11.64 16
10 H 0.09 2.10 7.24 -52.48 -0.38 1.72 16
11 C 0.08 2.09 4.48 -17.32 -0.08 2.01 16
12 N -0.76 -19.60 11.19 55.55 0.62 -18.98 16
13 Si 0.91 18.50 29.61 -169.99 -5.03 13.47 16
14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16
15 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16
16 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16
17 C 0.29 7.75 7.04 -15.85 -0.11 7.64 16
18 O -0.27 -6.82 7.45 -17.50 -0.13 -6.95 16
19 C 0.05 0.92 10.41 101.05 1.05 1.97 16
20 N -0.56 -14.24 9.26 -10.18 -0.09 -14.34 16
21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
23 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16
24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16
26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16
27 H 0.08 1.60 7.11 -51.93 -0.37 1.23 16
28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
29 H 0.05 1.02 7.84 -51.92 -0.41 0.61 16
30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16
32 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
33 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16
34 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16
LS Contribution 289.11 15.07 4.36 4.36
Total: -1.00 -28.97 289.11 -6.47 -35.44
By element:
Atomic # 1 Polarization: 5.71 SS G_CDS: -4.94 Total: 0.78 kcal
Atomic # 6 Polarization: 0.04 SS G_CDS: -1.19 Total: -1.15 kcal
Atomic # 7 Polarization: -46.41 SS G_CDS: 0.46 Total: -45.94 kcal
Atomic # 8 Polarization: -6.82 SS G_CDS: -0.13 Total: -6.95 kcal
Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -28.97 -6.47 -35.44 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260345779.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.747 kcal
(2) G-P(sol) polarization free energy of solvation -28.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.444 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.698 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds