Wall clock time and date at job start Mon Mar 30 2020 03:04:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50698 * 109.47095 * 2 1
4 4 N 1.32047 * 118.76793 * 269.99809 * 3 2 1
5 5 C 1.32023 * 121.24888 * 180.02562 * 4 3 2
6 6 C 1.50698 * 120.57884 * 180.27344 * 5 4 3
7 7 C 1.52994 * 109.47278 * 269.71999 * 6 5 4
8 8 C 1.40912 * 118.83562 * 359.97438 * 5 4 3
9 9 C 1.41172 * 121.08487 * 180.02562 * 8 5 4
10 10 H 1.08004 * 119.99959 * 322.63129 * 9 8 5
11 11 C 1.39960 * 120.00028 * 142.63008 * 9 8 5
12 12 N 1.30854 * 120.00236 * 339.42990 * 11 9 8
13 13 Si 1.86799 * 120.00025 * 159.43525 * 11 9 8
14 14 H 1.48496 * 109.47267 * 89.99538 * 13 11 9
15 15 H 1.48500 * 109.47395 * 209.99679 * 13 11 9
16 16 H 1.48505 * 109.46867 * 329.99829 * 13 11 9
17 17 C 1.41878 * 117.83350 * 0.02562 * 8 5 4
18 18 O 1.35268 * 120.68291 * 180.02562 * 17 8 5
19 19 C 1.42893 * 116.99990 * 179.97438 * 18 17 8
20 20 N 1.31872 * 118.77415 * 90.00067 * 3 2 1
21 21 H 1.08994 * 109.47666 * 180.02562 * 1 2 3
22 22 H 1.08995 * 109.47440 * 300.00634 * 1 2 3
23 23 H 1.09010 * 109.46721 * 60.00141 * 1 2 3
24 24 H 1.09001 * 109.47349 * 240.00067 * 2 1 3
25 25 H 1.08997 * 109.46990 * 119.99820 * 2 1 3
26 26 H 1.08996 * 109.47477 * 29.71892 * 6 5 4
27 27 H 1.09001 * 109.46745 * 149.71652 * 6 5 4
28 28 H 1.09003 * 109.47601 * 180.02562 * 7 6 5
29 29 H 1.09011 * 109.47259 * 300.00190 * 7 6 5
30 30 H 1.09001 * 109.47516 * 60.00125 * 7 6 5
31 31 H 0.96994 * 120.00172 * 180.02562 * 12 11 9
32 32 H 1.08999 * 109.47186 * 179.97438 * 19 18 17
33 33 H 1.08999 * 109.47362 * 299.99686 * 19 18 17
34 34 H 1.08998 * 109.47284 * 59.99855 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2442 2.0199 -1.1575
5 6 2.6843 3.2633 -1.2146
6 6 2.9151 3.9345 -2.5440
7 6 4.3549 3.6860 -2.9977
8 6 2.9284 3.9539 -0.0108
9 6 3.3989 5.2848 -0.0165
10 1 4.1132 5.6019 -0.7621
11 6 2.9398 6.1935 0.9439
12 7 1.8173 5.9656 1.5765
13 14 3.9295 7.7319 1.3226
14 1 3.4911 8.8347 0.4301
15 1 3.7120 8.1245 2.7381
16 1 5.3724 7.4593 1.1005
17 6 2.6858 3.2679 1.2072
18 8 2.9002 3.8760 2.3964
19 6 2.6297 3.1125 3.5735
20 7 2.2439 2.0193 1.1559
21 1 -0.3634 -1.0276 0.0005
22 1 -0.3634 0.5139 0.8899
23 1 -0.3633 0.5139 -0.8901
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 2.2257 3.5251 -3.2823
27 1 2.7455 5.0066 -2.4439
28 1 4.5220 4.1718 -3.9591
29 1 5.0444 4.0954 -2.2593
30 1 4.5244 2.6139 -3.0978
31 1 1.4990 6.5955 2.2418
32 1 2.8433 3.7165 4.4554
33 1 1.5809 2.8159 3.5812
34 1 3.2590 2.2226 3.5820
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260345779.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:53
Heat of formation + Delta-G solvation = -36.958817 kcal
Electronic energy + Delta-G solvation = -17229.774909 eV
Core-core repulsion = 14547.573953 eV
Total energy + Delta-G solvation = -2682.200956 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.36174 -38.85111 -36.46546 -35.03226 -33.81088 -32.31912 -31.23023 -28.16991
-27.39039 -25.08124 -24.65562 -22.82239 -21.53965 -19.44820 -18.80169 -17.72449
-16.96303 -16.48810 -15.64978 -15.38435 -15.21414 -15.02724 -14.72195 -14.32562
-14.11454 -13.63497 -13.52378 -13.11520 -12.86722 -12.68161 -12.64583 -12.45216
-12.21042 -12.08723 -11.92695 -11.87466 -11.75502 -11.16081 -10.89425 -10.39861
-9.74277 -9.21888 -8.65384 -6.31517 0.68333 0.90958 1.41772 1.48240
1.55958 2.24075 2.64636 2.82994 3.53620 3.62036 3.75144 4.32315
4.38431 4.46203 4.49270 4.51588 4.57821 4.65507 4.69009 4.71933
4.82302 5.02466 5.03892 5.16648 5.19790 5.25028 5.31224 5.37164
5.45977 5.49551 5.91001 6.28250 6.37464 6.69330 6.84811 7.12935
7.89347 8.35466
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022286 B = 0.010852 C = 0.007986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1256.072523 B = 2579.655880 C = 3505.477039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.027 4.027
3 C 0.194 3.806
4 N -0.522 5.522
5 C 0.046 3.954
6 C -0.041 4.041
7 C -0.128 4.128
8 C -0.011 4.011
9 C -0.466 4.466
10 H 0.092 0.908
11 C 0.048 3.952
12 N -0.797 5.797
13 Si 0.975 3.025
14 H -0.260 1.260
15 H -0.272 1.272
16 H -0.259 1.259
17 C 0.267 3.733
18 O -0.289 6.289
19 C 0.044 3.956
20 N -0.572 5.572
21 H 0.088 0.912
22 H 0.034 0.966
23 H 0.041 0.959
24 H 0.084 0.916
25 H 0.078 0.922
26 H 0.069 0.931
27 H 0.073 0.927
28 H 0.081 0.919
29 H 0.042 0.958
30 H 0.044 0.956
31 H 0.287 0.713
32 H 0.106 0.894
33 H 0.036 0.964
34 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.408 -2.490 -0.758 2.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.067 4.067
3 C -0.071 4.071
4 N -0.239 5.239
5 C -0.099 4.099
6 C -0.079 4.079
7 C -0.186 4.186
8 C -0.019 4.019
9 C -0.495 4.495
10 H 0.110 0.890
11 C -0.171 4.171
12 N -0.422 5.422
13 Si 0.796 3.204
14 H -0.184 1.184
15 H -0.197 1.197
16 H -0.183 1.183
17 C 0.076 3.924
18 O -0.192 6.192
19 C -0.052 4.052
20 N -0.303 5.303
21 H 0.107 0.893
22 H 0.054 0.946
23 H 0.060 0.940
24 H 0.103 0.897
25 H 0.096 0.904
26 H 0.088 0.912
27 H 0.091 0.909
28 H 0.100 0.900
29 H 0.061 0.939
30 H 0.063 0.937
31 H 0.098 0.902
32 H 0.124 0.876
33 H 0.055 0.945
34 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 0.995 -3.066 -0.501 3.262
hybrid contribution 0.307 1.317 0.782 1.562
sum 1.302 -1.749 0.281 2.199
Atomic orbital electron populations
1.21593 0.94104 1.02503 1.00512 1.19995 0.96385 0.87537 1.02747
1.22544 1.03400 0.98604 0.82505 1.67404 1.15203 1.11195 1.30102
1.21838 1.01794 0.90910 0.95330 1.20042 0.98129 0.99282 0.90477
1.21578 0.94857 1.01001 1.01151 1.18575 0.97227 0.96448 0.89611
1.19374 1.22978 0.93351 1.13834 0.88997 1.26556 0.94477 1.02670
0.93373 1.69778 1.17505 1.36233 1.18645 0.85303 0.79656 0.77123
0.78296 1.18442 1.19721 1.18319 1.20731 0.97472 0.87366 0.86843
1.86276 1.81312 1.39954 1.11694 1.22717 0.99989 0.96364 0.86141
1.67303 1.19514 1.10830 1.32629 0.89277 0.94638 0.93993 0.89743
0.90391 0.91234 0.90889 0.89988 0.93919 0.93661 0.90232 0.87563
0.94532 0.93592
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.15 9.89 71.98 0.71 -3.44 16
2 C -0.03 -1.00 6.35 29.85 0.19 -0.81 16
3 C 0.19 9.25 6.90 138.65 0.96 10.20 16
4 N -0.52 -25.67 10.23 -174.25 -1.78 -27.46 16
5 C 0.05 2.31 6.15 43.18 0.27 2.58 16
6 C -0.04 -1.68 5.77 29.85 0.17 -1.51 16
7 C -0.13 -4.41 9.89 71.98 0.71 -3.69 16
8 C -0.01 -0.62 5.40 -21.00 -0.11 -0.74 16
9 C -0.47 -24.12 7.77 23.41 0.18 -23.93 16
10 H 0.09 4.48 7.24 -2.91 -0.02 4.45 16
11 C 0.05 2.35 4.48 85.26 0.38 2.73 16
12 N -0.80 -41.53 11.19 21.83 0.24 -41.29 16
13 Si 0.98 37.69 29.61 68.60 2.03 39.72 16
14 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16
15 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16
16 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16
17 C 0.27 14.46 7.04 85.48 0.60 15.06 16
18 O -0.29 -14.75 7.45 -85.52 -0.64 -15.39 16
19 C 0.04 1.77 10.41 113.37 1.18 2.95 16
20 N -0.57 -29.24 9.26 -299.04 -2.77 -32.01 16
21 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16
22 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16
23 H 0.04 1.42 8.14 -2.38 -0.02 1.41 16
24 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16
25 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16
26 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16
27 H 0.07 3.01 7.11 -2.39 -0.02 3.00 16
28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
29 H 0.04 1.55 7.84 -2.38 -0.02 1.53 16
30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
31 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16
32 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16
33 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16
34 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16
Total: -1.00 -62.77 289.11 3.41 -59.36
By element:
Atomic # 1 Polarization: 16.57 SS G_CDS: 1.08 Total: 17.65 kcal
Atomic # 6 Polarization: -5.83 SS G_CDS: 5.24 Total: -0.59 kcal
Atomic # 7 Polarization: -96.44 SS G_CDS: -4.31 Total: -100.75 kcal
Atomic # 8 Polarization: -14.75 SS G_CDS: -0.64 Total: -15.39 kcal
Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal
Total: -62.77 3.41 -59.36 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260345779.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.402 kcal
(2) G-P(sol) polarization free energy of solvation -62.769 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.367 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.361 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.959 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds