Wall clock time and date at job start Mon Mar 30 2020 03:37:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.46194 * 2 1
4 4 C 1.53107 * 109.45992 * 240.04795 * 2 1 3
5 5 C 1.53433 * 109.73320 * 170.09510 * 4 2 1
6 6 C 1.50559 * 108.30051 * 49.98151 * 5 4 2
7 7 O 1.33164 * 129.73187 * 163.20331 * 6 5 4
8 8 N 1.21456 * 111.27661 * 180.27899 * 7 6 5
9 9 C 1.30702 * 111.68985 * 359.92483 * 8 7 6
10 10 C 1.35519 * 123.81156 * 343.36640 * 6 5 4
11 11 C 1.50076 * 124.86534 * 359.69749 * 10 6 5
12 12 C 1.50695 * 109.71120 * 103.60320 * 11 10 6
13 13 H 1.08000 * 120.00545 * 246.30346 * 12 11 10
14 14 C 1.37881 * 119.99740 * 66.30414 * 12 11 10
15 15 N 1.31509 * 120.00110 * 359.95667 * 14 12 11
16 16 Si 1.86808 * 119.99787 * 179.97438 * 14 12 11
17 17 H 1.48496 * 109.47285 * 0.02562 * 16 14 12
18 18 H 1.48499 * 109.46708 * 119.99931 * 16 14 12
19 19 H 1.48498 * 109.46865 * 239.99640 * 16 14 12
20 20 C 1.52997 * 109.71229 * 224.23639 * 11 10 6
21 21 N 1.46902 * 109.47149 * 64.63325 * 20 11 10
22 22 H 1.09003 * 109.46921 * 300.01347 * 1 2 3
23 23 H 1.08993 * 109.47710 * 60.01966 * 1 2 3
24 24 H 1.08999 * 109.47043 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.43079 * 290.17011 * 4 2 1
26 26 H 1.09004 * 109.43098 * 50.01062 * 4 2 1
27 27 H 1.08997 * 109.68223 * 290.28707 * 5 4 2
28 28 H 1.09004 * 109.73992 * 169.70658 * 5 4 2
29 29 H 1.07998 * 127.01431 * 180.02562 * 9 8 7
30 30 H 0.97000 * 120.00381 * 180.02562 * 15 14 12
31 31 H 1.09002 * 109.47160 * 184.63488 * 20 11 10
32 32 H 1.09000 * 109.46885 * 304.63564 * 20 11 10
33 33 H 1.00902 * 111.00104 * 65.09026 * 21 20 11
34 34 H 1.00902 * 111.00282 * 189.04100 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0400 -0.7208 -1.2508
5 6 3.5541 -0.5127 -1.3874
6 6 4.1981 -0.8473 -0.0683
7 8 5.4734 -1.1057 0.2150
8 7 5.6233 -1.3411 1.3971
9 6 4.4934 -1.2718 2.0505
10 6 3.5185 -0.9418 1.1003
11 6 2.0416 -0.7235 1.2539
12 6 1.3435 -2.0515 1.3949
13 1 0.6683 -2.3913 0.6235
14 6 1.5666 -2.8328 2.5089
15 7 2.3894 -2.4194 3.4478
16 14 0.7006 -4.4787 2.6840
17 1 -0.1647 -4.7112 1.4998
18 1 1.7116 -5.5623 2.7781
19 1 -0.1328 -4.4712 3.9130
20 6 1.7729 0.1356 2.4911
21 7 2.3497 1.4722 2.2938
22 1 -0.3633 0.5141 0.8899
23 1 -0.3634 0.5135 -0.8901
24 1 -0.3633 -1.0277 0.0005
25 1 1.8267 -1.7865 -1.1676
26 1 1.5380 -0.3189 -2.1310
27 1 3.7602 0.5264 -1.6438
28 1 3.9471 -1.1680 -2.1648
29 1 4.3425 -1.4350 3.1074
30 1 2.5467 -2.9692 4.2314
31 1 0.6975 0.2233 2.6460
32 1 2.2288 -0.3317 3.3639
33 1 1.8858 1.9589 1.5415
34 1 2.3166 2.0099 3.1470
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260346939.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:41
Heat of formation + Delta-G solvation = 55.415172 kcal
Electronic energy + Delta-G solvation = -18136.344165 eV
Core-core repulsion = 15458.148846 eV
Total energy + Delta-G solvation = -2678.195319 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-43.53471 -38.16557 -33.87216 -32.48921 -31.99654 -31.07110 -29.00214 -26.75122
-24.44351 -23.55552 -22.10950 -20.84773 -19.89781 -18.39999 -16.23524 -16.12998
-15.95994 -15.03411 -14.61239 -14.09868 -13.51840 -13.23067 -12.95849 -12.78559
-12.15869 -11.96453 -11.68099 -11.47036 -11.23304 -10.95318 -10.77143 -10.67810
-10.53416 -10.07105 -10.02815 -9.76791 -9.23838 -8.95547 -8.72300 -8.53482
-7.67023 -7.59345 -6.12836 -4.22176 2.77874 3.21354 3.31029 3.32508
3.91660 4.27993 4.32047 5.13021 5.50103 5.58967 5.67859 5.72282
5.85907 6.03239 6.11591 6.26120 6.27759 6.44231 6.51120 6.58718
6.65449 6.77492 6.89060 6.92968 7.07415 7.14219 7.23780 7.37115
7.70555 7.70613 7.91271 8.08663 8.33797 8.36441 8.79805 9.43764
9.59363 10.87806
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.020275 B = 0.013530 C = 0.011534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1380.709704 B = 2068.985794 C = 2427.087646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.082 4.082
3 H 0.056 0.944
4 C -0.107 4.107
5 C -0.018 4.018
6 C -0.107 4.107
7 O 0.069 5.931
8 N -0.418 5.418
9 C 0.040 3.960
10 C -0.092 4.092
11 C 0.149 3.851
12 C -0.499 4.499
13 H 0.067 0.933
14 C 0.067 3.933
15 N -0.885 5.885
16 Si 0.893 3.107
17 H -0.273 1.273
18 H -0.285 1.285
19 H -0.284 1.284
20 C 0.069 3.931
21 N -0.854 5.854
22 H 0.045 0.955
23 H 0.031 0.969
24 H 0.066 0.934
25 H 0.074 0.926
26 H 0.057 0.943
27 H 0.071 0.929
28 H 0.069 0.931
29 H 0.196 0.804
30 H 0.262 0.738
31 H 0.007 0.993
32 H 0.109 0.891
33 H 0.321 0.679
34 H 0.321 0.679
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.523 4.757 -5.176 7.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.101 4.101
3 H 0.074 0.926
4 C -0.144 4.144
5 C -0.056 4.056
6 C -0.171 4.171
7 O 0.009 5.991
8 N -0.129 5.129
9 C -0.136 4.136
10 C -0.095 4.095
11 C 0.147 3.853
12 C -0.537 4.537
13 H 0.085 0.915
14 C -0.135 4.135
15 N -0.523 5.523
16 Si 0.721 3.279
17 H -0.198 1.198
18 H -0.211 1.211
19 H -0.210 1.210
20 C -0.061 4.061
21 N -0.382 5.382
22 H 0.064 0.936
23 H 0.050 0.950
24 H 0.085 0.915
25 H 0.093 0.907
26 H 0.075 0.925
27 H 0.090 0.910
28 H 0.088 0.912
29 H 0.213 0.787
30 H 0.072 0.928
31 H 0.026 0.974
32 H 0.127 0.873
33 H 0.133 0.867
34 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -0.526 4.018 -4.835 6.309
hybrid contribution -2.151 -0.589 0.584 2.305
sum -2.677 3.429 -4.251 6.082
Atomic orbital electron populations
1.21774 0.95992 1.02294 0.99110 1.21245 0.94957 0.98262 0.95612
0.92596 1.21619 0.92714 1.02469 0.97629 1.19879 0.94804 1.00758
0.90155 1.23804 0.84425 1.09812 0.99097 1.84488 1.27056 1.66339
1.21253 1.74117 1.25525 1.22855 0.90417 1.24959 0.86991 0.98569
1.03107 1.21023 0.98765 0.99658 0.90095 1.16605 0.85365 0.93422
0.89886 1.21158 1.25374 1.02210 1.04970 0.91498 1.24939 0.94804
0.97920 0.95792 1.69679 1.35541 1.37542 1.09550 0.86508 0.79448
0.83901 0.78034 1.19763 1.21083 1.21013 1.22117 0.94986 0.86459
1.02522 1.58984 1.63725 1.06088 1.09439 0.93592 0.95008 0.91522
0.90719 0.92478 0.91044 0.91225 0.78745 0.92799 0.97448 0.87266
0.86724 0.86878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.31 8.62 37.16 0.32 -1.99 16
2 C -0.08 -1.53 1.72 -90.28 -0.16 -1.68 16
3 H 0.06 1.01 6.15 -51.93 -0.32 0.70 16
4 C -0.11 -1.83 5.14 -26.45 -0.14 -1.97 16
5 C -0.02 -0.30 6.31 -27.73 -0.17 -0.48 16
6 C -0.11 -2.34 7.39 -35.35 -0.26 -2.60 16
7 O 0.07 1.58 11.20 19.24 0.22 1.80 16
8 N -0.42 -10.22 12.10 30.41 0.37 -9.85 16
9 C 0.04 0.99 10.44 -17.34 -0.18 0.81 16
10 C -0.09 -2.15 4.25 -105.20 -0.45 -2.59 16
11 C 0.15 3.28 0.13 -156.84 -0.02 3.26 16
12 C -0.50 -12.11 6.51 -34.44 -0.22 -12.34 16
13 H 0.07 1.62 5.82 -52.49 -0.31 1.31 16
14 C 0.07 1.68 5.17 -17.82 -0.09 1.59 16
15 N -0.88 -22.44 7.89 55.43 0.44 -22.00 16
16 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16
17 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16
20 C 0.07 1.49 4.98 -3.82 -0.02 1.47 16
21 N -0.85 -15.91 9.06 -10.37 -0.09 -16.00 16
22 H 0.04 0.79 6.96 -51.93 -0.36 0.43 16
23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
24 H 0.07 1.23 6.16 -51.93 -0.32 0.91 16
25 H 0.07 1.42 7.09 -51.93 -0.37 1.05 16
26 H 0.06 0.82 8.11 -51.93 -0.42 0.39 16
27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
29 H 0.20 4.97 6.44 -52.49 -0.34 4.63 16
30 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16
31 H 0.01 0.16 7.08 -51.93 -0.37 -0.21 16
32 H 0.11 2.67 5.60 -51.93 -0.29 2.38 16
33 H 0.32 5.43 7.12 -39.29 -0.28 5.15 16
34 H 0.32 5.33 9.08 -39.29 -0.36 4.97 16
LS Contribution 260.11 15.07 3.92 3.92
Total: -1.00 -26.57 260.11 -5.70 -32.26
By element:
Atomic # 1 Polarization: 15.43 SS G_CDS: -4.13 Total: 11.30 kcal
Atomic # 6 Polarization: -15.13 SS G_CDS: -1.39 Total: -16.52 kcal
Atomic # 7 Polarization: -48.57 SS G_CDS: 0.71 Total: -47.85 kcal
Atomic # 8 Polarization: 1.58 SS G_CDS: 0.22 Total: 1.80 kcal
Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal
Total LS contribution 3.92 Total: 3.92 kcal
Total: -26.57 -5.70 -32.26 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260346939.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.680 kcal
(2) G-P(sol) polarization free energy of solvation -26.567 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.112 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.415 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds