Wall clock time and date at job start Mon Mar 30 2020 03:37:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.46194 * 2 1
4 4 C 1.53107 * 109.45992 * 240.04795 * 2 1 3
5 5 C 1.53433 * 109.73320 * 170.09510 * 4 2 1
6 6 C 1.50559 * 108.30051 * 49.98151 * 5 4 2
7 7 O 1.33164 * 129.73187 * 163.20331 * 6 5 4
8 8 N 1.21456 * 111.27661 * 180.27899 * 7 6 5
9 9 C 1.30702 * 111.68985 * 359.92483 * 8 7 6
10 10 C 1.35519 * 123.81156 * 343.36640 * 6 5 4
11 11 C 1.50076 * 124.86534 * 359.69749 * 10 6 5
12 12 C 1.50695 * 109.71120 * 103.60320 * 11 10 6
13 13 H 1.08000 * 120.00545 * 246.30346 * 12 11 10
14 14 C 1.37881 * 119.99740 * 66.30414 * 12 11 10
15 15 N 1.31509 * 120.00110 * 359.95667 * 14 12 11
16 16 Si 1.86808 * 119.99787 * 179.97438 * 14 12 11
17 17 H 1.48496 * 109.47285 * 0.02562 * 16 14 12
18 18 H 1.48499 * 109.46708 * 119.99931 * 16 14 12
19 19 H 1.48498 * 109.46865 * 239.99640 * 16 14 12
20 20 C 1.52997 * 109.71229 * 224.23639 * 11 10 6
21 21 N 1.46902 * 109.47149 * 64.63325 * 20 11 10
22 22 H 1.09003 * 109.46921 * 300.01347 * 1 2 3
23 23 H 1.08993 * 109.47710 * 60.01966 * 1 2 3
24 24 H 1.08999 * 109.47043 * 180.02562 * 1 2 3
25 25 H 1.09004 * 109.43079 * 290.17011 * 4 2 1
26 26 H 1.09004 * 109.43098 * 50.01062 * 4 2 1
27 27 H 1.08997 * 109.68223 * 290.28707 * 5 4 2
28 28 H 1.09004 * 109.73992 * 169.70658 * 5 4 2
29 29 H 1.07998 * 127.01431 * 180.02562 * 9 8 7
30 30 H 0.97000 * 120.00381 * 180.02562 * 15 14 12
31 31 H 1.09002 * 109.47160 * 184.63488 * 20 11 10
32 32 H 1.09000 * 109.46885 * 304.63564 * 20 11 10
33 33 H 1.00902 * 111.00104 * 65.09026 * 21 20 11
34 34 H 1.00902 * 111.00282 * 189.04100 * 21 20 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8931 1.0277 0.0000
4 6 2.0400 -0.7208 -1.2508
5 6 3.5541 -0.5127 -1.3874
6 6 4.1981 -0.8473 -0.0683
7 8 5.4734 -1.1057 0.2150
8 7 5.6233 -1.3411 1.3971
9 6 4.4934 -1.2718 2.0505
10 6 3.5185 -0.9418 1.1003
11 6 2.0416 -0.7235 1.2539
12 6 1.3435 -2.0515 1.3949
13 1 0.6683 -2.3913 0.6235
14 6 1.5666 -2.8328 2.5089
15 7 2.3894 -2.4194 3.4478
16 14 0.7006 -4.4787 2.6840
17 1 -0.1647 -4.7112 1.4998
18 1 1.7116 -5.5623 2.7781
19 1 -0.1328 -4.4712 3.9130
20 6 1.7729 0.1356 2.4911
21 7 2.3497 1.4722 2.2938
22 1 -0.3633 0.5141 0.8899
23 1 -0.3634 0.5135 -0.8901
24 1 -0.3633 -1.0277 0.0005
25 1 1.8267 -1.7865 -1.1676
26 1 1.5380 -0.3189 -2.1310
27 1 3.7602 0.5264 -1.6438
28 1 3.9471 -1.1680 -2.1648
29 1 4.3425 -1.4350 3.1074
30 1 2.5467 -2.9692 4.2314
31 1 0.6975 0.2233 2.6460
32 1 2.2288 -0.3317 3.3639
33 1 1.8858 1.9589 1.5415
34 1 2.3166 2.0099 3.1470
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260346939.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:40
Heat of formation + Delta-G solvation = 38.724255 kcal
Electronic energy + Delta-G solvation = -18137.067937 eV
Core-core repulsion = 15458.148846 eV
Total energy + Delta-G solvation = -2678.919091 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-45.36246 -39.75273 -35.46106 -34.21541 -33.83084 -32.64514 -30.65660 -28.38146
-26.20442 -25.10361 -23.81388 -22.45479 -21.60726 -20.10171 -18.06576 -17.86469
-17.65841 -16.78369 -16.26151 -15.69931 -15.14171 -14.89825 -14.40014 -14.38141
-13.78279 -13.57645 -13.35302 -13.09401 -12.80303 -12.65843 -12.42991 -12.24160
-12.14370 -11.80842 -11.72647 -11.24095 -10.94030 -10.57102 -10.49754 -10.40157
-9.35116 -9.21672 -7.99975 -6.13215 1.01551 1.39248 1.45347 1.51477
2.06719 2.45988 2.64319 3.24740 3.97576 4.09704 4.14644 4.26840
4.29612 4.64314 4.67042 4.77353 4.88302 4.92959 5.07839 5.14230
5.19176 5.23026 5.32603 5.39989 5.52252 5.56562 5.67141 5.69718
5.83533 5.99875 6.20416 6.39587 6.66201 6.87692 7.00083 7.53486
7.78996 8.97313
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.020275 B = 0.013530 C = 0.011534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1380.709704 B = 2068.985794 C = 2427.087646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.082 4.082
3 H 0.066 0.934
4 C -0.104 4.104
5 C -0.018 4.018
6 C -0.100 4.100
7 O 0.072 5.928
8 N -0.436 5.436
9 C 0.020 3.980
10 C -0.114 4.114
11 C 0.143 3.857
12 C -0.501 4.501
13 H 0.065 0.935
14 C 0.024 3.976
15 N -0.899 5.899
16 Si 0.938 3.062
17 H -0.266 1.266
18 H -0.297 1.297
19 H -0.285 1.285
20 C 0.081 3.919
21 N -0.852 5.852
22 H 0.038 0.962
23 H 0.064 0.936
24 H 0.049 0.951
25 H 0.052 0.948
26 H 0.097 0.903
27 H 0.101 0.899
28 H 0.095 0.905
29 H 0.179 0.821
30 H 0.256 0.744
31 H -0.002 1.002
32 H 0.077 0.923
33 H 0.334 0.666
34 H 0.333 0.667
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.267 5.829 -7.501 10.045
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.100 4.100
3 H 0.084 0.916
4 C -0.141 4.141
5 C -0.056 4.056
6 C -0.164 4.164
7 O 0.012 5.988
8 N -0.147 5.147
9 C -0.155 4.155
10 C -0.118 4.118
11 C 0.141 3.859
12 C -0.539 4.539
13 H 0.084 0.916
14 C -0.175 4.175
15 N -0.538 5.538
16 Si 0.766 3.234
17 H -0.191 1.191
18 H -0.224 1.224
19 H -0.211 1.211
20 C -0.050 4.050
21 N -0.382 5.382
22 H 0.057 0.943
23 H 0.083 0.917
24 H 0.068 0.932
25 H 0.070 0.930
26 H 0.116 0.884
27 H 0.119 0.881
28 H 0.113 0.887
29 H 0.196 0.804
30 H 0.066 0.934
31 H 0.016 0.984
32 H 0.095 0.905
33 H 0.148 0.852
34 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -1.281 5.101 -7.156 8.881
hybrid contribution -1.899 -0.892 1.289 2.462
sum -3.180 4.210 -5.867 7.890
Atomic orbital electron populations
1.21704 0.94922 1.01555 1.00413 1.21235 0.95856 0.98346 0.94588
0.91610 1.21626 0.93003 1.01109 0.98397 1.20187 0.94249 1.03054
0.88066 1.24690 0.83495 1.07506 1.00709 1.84453 1.27966 1.65866
1.20560 1.74084 1.25680 1.23832 0.91102 1.24901 0.87984 0.99676
1.02953 1.21221 0.99370 1.00798 0.90412 1.16672 0.84571 0.92871
0.91762 1.21445 1.24906 1.03214 1.04380 0.91647 1.25510 0.95683
1.00106 0.96206 1.69827 1.36443 1.37913 1.09664 0.85809 0.78382
0.81212 0.78002 1.19058 1.22399 1.21075 1.21785 0.94009 0.87777
1.01388 1.58860 1.63491 1.05233 1.10657 0.94292 0.91706 0.93238
0.92951 0.88443 0.88085 0.88703 0.80378 0.93429 0.98365 0.90466
0.85218 0.85593
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.04 8.62 71.98 0.62 -3.42 16
2 C -0.08 -2.80 1.72 -10.58 -0.02 -2.82 16
3 H 0.07 2.13 6.15 -2.39 -0.01 2.12 16
4 C -0.10 -3.15 5.14 30.78 0.16 -2.99 16
5 C -0.02 -0.53 6.31 29.95 0.19 -0.34 16
6 C -0.10 -4.13 7.39 25.01 0.18 -3.95 16
7 O 0.07 3.23 11.20 78.88 0.88 4.11 16
8 N -0.44 -21.38 12.10 -58.30 -0.71 -22.08 16
9 C 0.02 1.02 10.44 85.31 0.89 1.91 16
10 C -0.11 -5.27 4.25 -20.24 -0.09 -5.36 16
11 C 0.14 6.17 0.13 -53.69 -0.01 6.16 16
12 C -0.50 -24.21 6.51 25.60 0.17 -24.04 16
13 H 0.07 3.12 5.82 -2.91 -0.02 3.10 16
14 C 0.02 1.23 5.17 84.66 0.44 1.67 16
15 N -0.90 -47.00 7.89 21.45 0.17 -46.83 16
16 Si 0.94 41.75 29.54 68.60 2.03 43.77 16
17 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16
18 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16
19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
20 C 0.08 3.50 4.98 86.30 0.43 3.93 16
21 N -0.85 -30.72 9.06 -186.72 -1.69 -32.41 16
22 H 0.04 1.25 6.96 -2.39 -0.02 1.23 16
23 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
24 H 0.05 1.71 6.16 -2.39 -0.01 1.70 16
25 H 0.05 1.84 7.09 -2.39 -0.02 1.82 16
26 H 0.10 2.22 8.11 -2.38 -0.02 2.20 16
27 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16
28 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16
29 H 0.18 9.52 6.44 -2.91 -0.02 9.51 16
30 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16
31 H 0.00 -0.08 7.08 -2.39 -0.02 -0.10 16
32 H 0.08 3.88 5.60 -2.39 -0.01 3.87 16
33 H 0.33 10.53 7.12 -89.69 -0.64 9.89 16
34 H 0.33 10.72 9.08 -89.69 -0.81 9.90 16
Total: -1.00 -57.50 260.11 3.34 -54.16
By element:
Atomic # 1 Polarization: 28.83 SS G_CDS: -0.31 Total: 28.53 kcal
Atomic # 6 Polarization: -32.22 SS G_CDS: 2.97 Total: -29.25 kcal
Atomic # 7 Polarization: -99.09 SS G_CDS: -2.23 Total: -101.32 kcal
Atomic # 8 Polarization: 3.23 SS G_CDS: 0.88 Total: 4.11 kcal
Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal
Total: -57.50 3.34 -54.16 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260346939.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.886 kcal
(2) G-P(sol) polarization free energy of solvation -57.500 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.724 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds